Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022690

Physical Location & Seq

Genomic Coordinates Forward (+)

5240079 .. 5241657

Gene Structure 1579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGACGGACAGACCATATGCTCTAGTCATGTTGACGGAAATCTTCGGCTGTGGGATATTCAAAAAGGAAAGCTACTCAATGAAGTGGCTGTACACTCAAATGCCGTCACATCTATATCTTTGCCACAGAGTGGCAACATGGTATTGACCGGTGGGAGGGACAATGTGCATCACCTTTTCGATATGAGATTCCCAGGAGTTTCTGGCACATTGAGAGCCACCGGAAACAGAGTAGCATCTAATTGGAGCCTATCCTGTATCAGTCCAGACGACAATTATGTTCCTGCTGGATCTGCCGACGGTGCTGTATATTTGGTCTATAGCCAAAGATGTGGAAGTCTTCTCTGGGCTTTGCAATTCATCAAACGCTCTTCTGCTTCAGGTGTTATGCTCTGCTTGGAGAAATGGACAAATGGTAATCCCAATATTGATGACTGGGGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

148

Amino Acids

16.01

Weight (kDa)

6.38

Isoelectric Point (pI)

29.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_THOC3	PF25174	2 - 109	5.3e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	2 - 103	2e-09	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	2 - 110	1.8e-08	CDC20/Fizzy WD40 domain
WD40_Prp19	PF24814	2 - 76	9.3e-08	Prp19 WD40 domain
WD40_Gbeta	PF25391	2 - 105	2.6e-06	G protein beta WD-40 repeat protein
Beta-prop_WDR5	PF25175	3 - 107	2.5e-13	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	3 - 104	5e-07	WDHD1 first WD40 domain
EIF3I	PF24805	3 - 97	3.4e-07	EIF3I
Beta-prop_EML_2	PF23414	5 - 108	4.5e-06	Echinoderm microtubule-associated protein second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022690)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455571
rosa_laevigata	RLG00000031052
rosa_rugosa	Rorug03G0008300
rosa_wichuraiana	Rw3G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	131
AclWI	GGATC	1 cut(s)	298
AcuI	CTGAAG	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	131
AfaI	GTAC	2 cut(s)	93, 442
AfiI	CCNNNNNNNGG	2 cut(s)	131, 156
AgeI	ACCGGT	1 cut(s)	149
AgsI	TTSAA	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	193
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AlwI	GGATC	1 cut(s)	298
AsiGI	ACCGGT	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	75, 107
BbsI	GAAGAC	1 cut(s)	332
BceAI	ACGGC	1 cut(s)	89
BciT130I	CCWGG	1 cut(s)	195
BfaI	CTAG	1 cut(s)	24
BfmI	CTRYAG	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	248
BmrFI	CCNGG	1 cut(s)	195
BmrI	ACTGGG	1 cut(s)	445
BmsI	GCATC	2 cut(s)	178, 245
BmuI	ACTGGG	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	2 cut(s)	149, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	131, 156
Bse118I	RCCGGY	1 cut(s)	149
Bse1I	ACTGG	1 cut(s)	440
BseBI	CCWGG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	193
BseLI	CCNNNNNNNGG	2 cut(s)	131, 156
BseNI	ACTGG	1 cut(s)	440
BshTI	ACCGGT	1 cut(s)	149
BsiSI	CCGG	2 cut(s)	150, 222
BslFI	GGGAC	1 cut(s)	173
BslI	CCNNNNNNNGG	2 cut(s)	131, 156
BsmFI	GGGAC	1 cut(s)	173
Bsp1407I	TGTACA	1 cut(s)	91
Bsp143I	GATC	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	248
BspPI	GGATC	1 cut(s)	298
BspQI	GCTCTTC	1 cut(s)	376
BsrFI	RCCGGY	1 cut(s)	149
BsrGI	TGTACA	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	1 cut(s)	290
Bst2UI	CCWGG	1 cut(s)	195
Bst4CI	ACNGT	1 cut(s)	302
Bst6I	CTCTTC	1 cut(s)	376
BstAUI	TGTACA	1 cut(s)	91
BstKTI	GATC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 302
BstNI	CCWGG	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	193
BstSFI	CTRYAG	1 cut(s)	319
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	290
BstXI	CCANNNNNNTGG	1 cut(s)	332
BstYI	RGATCY	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	92, 441
CspAI	ACCGGT	1 cut(s)	149
CviAII	CATG	2 cut(s)	29, 139
CviJI	RGCY	7 cut(s)	49, 73, 89, 218, 249, 324, 350
CviKI_1	RGCY	7 cut(s)	49, 73, 89, 218, 249, 324, 350
CviQI	GTAC	2 cut(s)	92, 441
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
DraIII	CACNNNGTG	1 cut(s)	131
Eam1104I	CTCTTC	1 cut(s)	376
EarI	CTCTTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	363
EcoRII	CCWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	32, 142
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	2 cut(s)	28, 138
FauNDI	CATATG	1 cut(s)	17
FspBI	CTAG	1 cut(s)	24
HapII	CCGG	2 cut(s)	150, 222
Hin1II	CATG	2 cut(s)	32, 142
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	1 cut(s)	189
HpaII	CCGG	2 cut(s)	150, 222
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	34, 94
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	2 cut(s)	34, 94
Hpy99I	CGWCG	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	302
HpyCH4V	TGCA	2 cut(s)	169, 355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 302
Hsp92II	CATG	2 cut(s)	32, 142
Kzo9I	GATC	1 cut(s)	290
LguI	GCTCTTC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	246
LweI	GCATC	2 cut(s)	178, 245
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	3 cut(s)	35, 332, 363
MflI	RGATCY	1 cut(s)	290
MluCI	AATT	3 cut(s)	241, 274, 356
MnlI	CCTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	99
MspI	CCGG	2 cut(s)	150, 222
MspR9I	CCNGG	1 cut(s)	195
MvaI	CCWGG	1 cut(s)	195
MwoI	GCNNNNNNNGC	2 cut(s)	293, 302
NdeI	CATATG	1 cut(s)	17
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	2 cut(s)	32, 142
NlaIV	GGNNCC	1 cut(s)	248
NmuCI	GTSAC	1 cut(s)	106
PciSI	GCTCTTC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	189
PflMI	CCANNNNNTGG	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	149
Psp6I	CCWGG	1 cut(s)	193
PspGI	CCWGG	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	290
RsaI	GTAC	2 cut(s)	93, 442
RsaNI	GTAC	2 cut(s)	92, 441
RseI	CAYNNNNRTG	1 cut(s)	99
SapI	GCTCTTC	1 cut(s)	376
Sau3AI	GATC	1 cut(s)	290
ScrFI	CCNGG	1 cut(s)	195
SetI	ASST	3 cut(s)	75, 177, 385
SfaNI	GCATC	2 cut(s)	178, 245
SfcI	CTRYAG	1 cut(s)	319
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	3 cut(s)	241, 274, 356
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	1 cut(s)	193
TaaI	ACNGT	1 cut(s)	302
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	241, 274, 356
TatI	WGTACW	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	189
TseFI	GTSAC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	96, 349
TspGWI	ACGGA	2 cut(s)	21, 51
Van91I	CCANNNNNTGG	1 cut(s)	131
XspI	CTAG	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.