Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0022690

Physical Location & Seq

Genomic Coordinates Forward (+)

1603629 .. 1604140

Gene Structure 512 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031052

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGATGTTGACGGAAATCTTCGGCTGTGGGATATTCAAAAAGGAAAGCTACTCAATGAAGTGGCTGCACACTCAAATGCCGTCACATCTATATCTTTGTCGCAGGGTGGCAACATGGTATTGACCGGTGGGAGGGACAATGTGCATCACCTTTTCGATGTGAGATTTCCAGGAGTTTGTGGCACATTGAGAGCCACCGGAAACAGAGTAGCATCTAATTGGAGCCTATCCTGTATCAGTCCAGATGACAATTGTGTTCCTGCTGGATCTGCCGACGGTGCTGTGTATATTTGGTCTATAGCCAAAGATGTGGAAGCCTTTTCTGGGCTTTGCAATTCATCAAACCCTCTTCTGCTGCCGGTGTTACGCTCTGCTTGGAGAAATGGTAATCCCAATATTGATGACTGGGTACTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000045 GO:0000421 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005776 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006897 GO:0006907 GO:0006909 GO:0006914 GO:0006996 GO:0007033 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016020 GO:0016043 GO:0016192 GO:0016236 GO:0016740 GO:0019538 GO:0019776 GO:0019941 GO:0022607 GO:0030163 GO:0030587 GO:0031090 GO:0031154 GO:0032502 GO:0032991 GO:0034274 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051703 GO:0051704 GO:0061919 GO:0070925 GO:0071704 GO:0071840 GO:0090382 GO:0090702 GO:0098588 GO:0098657 GO:0098805 GO:0099120 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905037 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 ko04621 map04136 map04138 map04140 map04621

Pfam Domains

Protein Families

ATG16 WD40

Protein Analysis

140

Amino Acids

14.91

Weight (kDa)

5.2

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	3 - 112	5.8e-14	WDR5 beta-propeller domain
WD40_Prp19	PF24814	4 - 67	1.6e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	4 - 104	3.4e-11	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	4 - 100	4.1e-10	WDR3 first beta-propeller domain
WD40_CDC20-Fz	PF24807	4 - 102	1e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_2nd	PF25172	4 - 54	9.4e-06	WDR3 second beta-propeller domain
Beta-prop_WDR36-Utp21_1st	PF25171	4 - 103	4.5e-07	WDR36/Utp21 first beta-propeller
Beta-prop_EML_2	PF23414	4 - 113	9.4e-07	Echinoderm microtubule-associated protein second beta-propeller
WD40_Gbeta	PF25391	5 - 106	3.3e-07	G protein beta WD-40 repeat protein
Beta-prop_TEP1_2nd	PF25047	21 - 104	1.1e-08	TEP-1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022690)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0455571
rosa_laevigata	RLG00000031052
rosa_rugosa	Rorug03G0008300
rosa_wichuraiana	Rw3G005420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	274
AfaI	GTAC	1 cut(s)	411
AfiI	CCNNNNNNNGG	2 cut(s)	132, 324
AgeI	ACCGGT	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	1 cut(s)	49
AluI	AGCT	1 cut(s)	49
AlwI	GGATC	1 cut(s)	274
ApeKI	GCWGC	2 cut(s)	65, 355
AsiGI	ACCGGT	1 cut(s)	125
AsuHPI	GGTGA	1 cut(s)	140
BaeI	ACNNNNGTAYC	1 cut(s)	401
BbvI	GCAGC	2 cut(s)	52, 342
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	297
BisI	GCNGC	2 cut(s)	66, 356
BlsI	GCNGC	2 cut(s)	67, 357
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	154, 221
BmuI	ACTGGG	1 cut(s)	415
BsaWI	WCCGGW	2 cut(s)	125, 197
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 324
Bse118I	RCCGGY	2 cut(s)	125, 358
Bse1I	ACTGG	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	171
BseGI	GGATG	1 cut(s)	10
BseLI	CCNNNNNNNGG	2 cut(s)	132, 324
BseNI	ACTGG	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	52, 342
BsgI	GTGCAG	1 cut(s)	51
BshTI	ACCGGT	1 cut(s)	125
BsiSI	CCGG	3 cut(s)	126, 198, 359
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	2 cut(s)	132, 324
BsmFI	GGGAC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	266
BspLI	GGNNCC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	274
BsrFI	RCCGGY	2 cut(s)	125, 358
BsrI	ACTGG	1 cut(s)	410
BssAI	RCCGGY	2 cut(s)	125, 358
BssMI	GATC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	269
BstMBI	GATC	1 cut(s)	266
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 278
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	52, 342
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	10
Cfr10I	RCCGGY	2 cut(s)	125, 358
Csp6I	GTAC	1 cut(s)	410
CspAI	ACCGGT	1 cut(s)	125
CviAII	CATG	1 cut(s)	115
CviJI	RGCY	8 cut(s)	25, 49, 65, 194, 225, 302, 317, 328
CviKI_1	RGCY	8 cut(s)	25, 49, 65, 194, 225, 302, 317, 328
CviQI	GTAC	1 cut(s)	410
DpnI	GATC	1 cut(s)	268
DpnII	GATC	1 cut(s)	266
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EcoRII	CCWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	118
FaiI	YATR	4 cut(s)	92, 116, 288, 299
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	1 cut(s)	114
Fnu4HI	GCNGC	2 cut(s)	66, 356
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	66, 356
GluI	GCNGC	2 cut(s)	66, 356
HapII	CCGG	3 cut(s)	126, 198, 359
Hin1II	CATG	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	10
HindII	GTYRAC	1 cut(s)	10
HpaII	CCGG	3 cut(s)	126, 198, 359
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	1 cut(s)	10
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	10
Hpy99I	CGWCG	1 cut(s)	278
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	68, 145, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 278
Hsp92II	CATG	1 cut(s)	118
Kzo9I	GATC	1 cut(s)	266
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	52, 342
LweI	GCATC	2 cut(s)	154, 221
MaeIII	GTNAC	2 cut(s)	82, 363
MalI	GATC	1 cut(s)	268
MboI	GATC	1 cut(s)	266
MboII	GAAGA	2 cut(s)	11, 341
MfeI	CAATTG	1 cut(s)	250
MflI	RGATCY	1 cut(s)	266
MluCI	AATT	3 cut(s)	217, 250, 334
MnlI	CCTC	2 cut(s)	126, 357
MslI	CAYNNNNRTG	1 cut(s)	75
MspI	CCGG	3 cut(s)	126, 198, 359
MspR9I	CCNGG	1 cut(s)	171
MunI	CAATTG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	171
MwoI	GCNNNNNNNGC	2 cut(s)	269, 278
NdeII	GATC	1 cut(s)	266
NlaIII	CATG	1 cut(s)	118
NlaIV	GGNNCC	1 cut(s)	224
NmuCI	GTSAC	1 cut(s)	82
PfoI	TCCNGGA	1 cut(s)	169
PinAI	ACCGGT	1 cut(s)	125
PkrI	GCNGC	2 cut(s)	67, 357
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	1 cut(s)	411
RsaNI	GTAC	1 cut(s)	410
RseI	CAYNNNNRTG	1 cut(s)	75
SatI	GCNGC	2 cut(s)	66, 356
Sau3AI	GATC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	171
SetI	ASST	2 cut(s)	51, 153
SfaNI	GCATC	2 cut(s)	154, 221
SfcI	CTRYAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
Sse9I	AATT	3 cut(s)	217, 250, 334
SspI	AATATT	1 cut(s)	397
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	278
TaqI	TCGA	1 cut(s)	156
TasI	AATT	3 cut(s)	217, 250, 334
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	65, 355
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	2 cut(s)	72, 327
TspGWI	ACGGA	1 cut(s)	27

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.