Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004755

Physical Location & Seq

Genomic Coordinates Forward (+)

635728 .. 639808

Gene Structure 4081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGAACTCATACAACCGTCTTCTCTTGCATCGTCTTGCAGATATATTTGGATTTTCCCATGAATCTGTTGGTGAAGGAGAGGAGCGGCATTTAGTTTTGGAGCGATGCCCGGAGACATCAATACCGTCCATCCTTGTCAGTGATATTTTGTGGCAGTATGATGAGCCTGAATCTCCAATGACTTCACACTTATTATTAAAGAGGTCAGAAGCCCCTCCAGTGTTAAGGAAAAAATCTCCTCCGCTTCAACATTCACTAGAGGAGAGAGAAGCAGCATATTTGGCAGCTCGTGAGCGAATATTTTCGAGGGATTTGGGAGAAGTAAAGGAATCTGTCACTCAGAGGCAACGCAATGTTCCTGTGGTTGCCCGTCGGATGATAGCACATGCCCTAGGCAAAAGAATCAACCCATCCAGTCAGGATGCCACTCATGAGGATTGCAACGCATCTAGAGGGCTGAGTGATAAGTTGAATTGTCAAGGCAAGGTTGAAGTTGAGACCAATTTGATTGTGGAAGCTTGTCATCAGACCCTCACCCCTTTGGACCAAAATGTGAACTCCTGTGGTGAAGTGAAAAAGAACAACCGTAGTTTGAATGCATCACCCCCAAGTCTAAGTGAAAGGAAGACATCCCAAAAACAAGATGACAAGATTTCTGGTGCTGTCAGCAGCATATCTCAAAATGGAAGAAAAGGACATGGTGCAGATGAGGAAGACATCAAAAGGGAACATTTGGGTGCAGCAAAGAGGATGTTTGCTCATGCCCTAGGAATGCGCTCAGGGAAGAATGGTGTTTCATCAAAAGGCAGCGAGATAAAGCATGTTAACATGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

278

Amino Acids

30.91

Weight (kDa)

8.25

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
R3H	PF01424	1 - 34	2e-08	R3H domain
SUZ	PF12752	76 - 103	1.4e-08	SUZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10570 AT1G10570 AT1G10570 AT1G60220
fragaria_vesca	FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560
malus_domestica	MD13G1091500.v1.1
prunus_persica	Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1
pyrus_communis	pycom13g07950
rosa_chinensis	RchiOBHm_Chr3g0455541 RchiOBHm_Chr4g0443941
rosa_laevigata	RLG00000005875
rosa_multiflora	Rmu_sc0011390.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384480
rosa_rugosa	Rorug03G0008300 Rorug04G0348400 Rorug04G0348500
rosa_samantha	Rh4AG409000 Rh4BG420100 Rh4CG434100 Rh4DG415100
rosa_wichuraiana	Rw3G005410 Rw4G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	85
AciI	CCGC	2 cut(s)	85, 242
AgsI	TTSAA	4 cut(s)	248, 472, 491, 595
AluBI	AGCT	2 cut(s)	287, 518
AluI	AGCT	2 cut(s)	287, 518
Alw26I	GTCTC	2 cut(s)	107, 491
ApeKI	GCWGC	5 cut(s)	272, 284, 669, 740, 807
Asp700I	GAANNNNTTC	1 cut(s)	301
AspA2I	CCTAGG	2 cut(s)	391, 766
AspLEI	GCGC	1 cut(s)	777
AspS9I	GGNCC	1 cut(s)	544
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	4 cut(s)	83, 526, 578, 594
AvaII	GGWCC	1 cut(s)	544
AvrII	CCTAGG	2 cut(s)	391, 766
BauI	CACGAG	1 cut(s)	288
BbsI	GAAGAC	3 cut(s)	11, 632, 720
BbvI	GCAGC	5 cut(s)	284, 296, 681, 752, 819
BccI	CCATC	2 cut(s)	137, 418
BcnI	CCSGG	1 cut(s)	110
BcoDI	GTCTC	2 cut(s)	107, 491
BfaI	CTAG	4 cut(s)	257, 392, 450, 767
BisI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
BlnI	CCTAGG	2 cut(s)	391, 766
BlsI	GCNGC	6 cut(s)	87, 274, 286, 671, 742, 809
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	1 cut(s)	544
BmgT120I	GGNCC	1 cut(s)	544
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	5 cut(s)	37, 95, 412, 455, 608
BpiI	GAAGAC	3 cut(s)	11, 632, 720
BpmI	CTGGAG	1 cut(s)	201
Bpu10I	CCTNAGC	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	110
BsaI	GGTCTC	1 cut(s)	491
BsaJI	CCNNGG	2 cut(s)	391, 766
Bse1I	ACTGG	2 cut(s)	218, 414
Bse3DI	GCAATG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	391, 766
BseGI	GGATG	6 cut(s)	129, 381, 410, 427, 629, 756
BseMI	GCAATG	1 cut(s)	358
BseMII	CTCAG	3 cut(s)	353, 449, 792
BseNI	ACTGG	2 cut(s)	218, 414
BseRI	GAGGAG	3 cut(s)	95, 228, 275
BseXI	GCAGC	5 cut(s)	284, 296, 681, 752, 819
BsgI	GTGCAG	2 cut(s)	723, 759
BsiSI	CCGG	1 cut(s)	110
BsmAI	GTCTC	2 cut(s)	107, 491
BsmI	GAATGC	2 cut(s)	601, 777
Bso31I	GGTCTC	1 cut(s)	491
BspACI	CCGC	2 cut(s)	85, 242
BspCNI	CTCAG	3 cut(s)	352, 450, 791
BspHI	TCATGA	1 cut(s)	430
BspTNI	GGTCTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	85
BsrDI	GCAATG	1 cut(s)	358
BsrI	ACTGG	2 cut(s)	218, 414
BssECI	CCNNGG	2 cut(s)	391, 766
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	391, 766
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	17, 126, 587
BstDEI	CTNAG	4 cut(s)	339, 458, 614, 778
BstF5I	GGATG	6 cut(s)	129, 381, 410, 427, 629, 756
BstHHI	GCGC	1 cut(s)	777
BstMAI	GTCTC	2 cut(s)	107, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	2 cut(s)	389, 824
BstSCI	CCNGG	1 cut(s)	108
BstV1I	GCAGC	5 cut(s)	284, 296, 681, 752, 819
BstV2I	GAAGAC	3 cut(s)	11, 632, 720
BtgZI	GCGATG	1 cut(s)	118
BtsCI	GGATG	6 cut(s)	129, 381, 410, 427, 629, 756
BtsIMutI	CAGTG	2 cut(s)	145, 225
CciI	TCATGA	1 cut(s)	430
CfoI	GCGC	1 cut(s)	777
Cfr13I	GGNCC	1 cut(s)	544
CviAII	CATG	7 cut(s)	59, 386, 431, 698, 761, 821, 829
CviJI	RGCY	5 cut(s)	166, 212, 287, 457, 518
CviKI_1	RGCY	5 cut(s)	166, 212, 287, 457, 518
DdeI	CTNAG	4 cut(s)	339, 458, 614, 778
Eco130I	CCWWGG	2 cut(s)	391, 766
Eco31I	GGTCTC	1 cut(s)	491
Eco47I	GGWCC	1 cut(s)	544
EcoT14I	CCWWGG	2 cut(s)	391, 766
EcoT22I	ATGCAT	1 cut(s)	601
ErhI	CCWWGG	2 cut(s)	391, 766
FaeI	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
FatI	CATG	7 cut(s)	58, 385, 430, 697, 760, 820, 828
Fnu4HI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
FokI	GGATG	6 cut(s)	116, 388, 397, 434, 616, 763
Fsp4HI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
FspBI	CTAG	4 cut(s)	257, 392, 450, 767
GlaI	GCGC	1 cut(s)	776
GluI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
GsuI	CTGGAG	1 cut(s)	201
HapII	CCGG	1 cut(s)	110
HhaI	GCGC	1 cut(s)	777
Hin1II	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
Hin6I	GCGC	1 cut(s)	775
HinP1I	GCGC	1 cut(s)	775
HincII	GTYRAC	1 cut(s)	826
HindII	GTYRAC	1 cut(s)	826
HindIII	AAGCTT	1 cut(s)	516
HinfI	GANTC	4 cut(s)	62, 170, 329, 402
HpaI	GTTAAC	1 cut(s)	826
HpaII	CCGG	1 cut(s)	110
HphI	GGTGA	4 cut(s)	83, 526, 578, 594
Hpy166II	GTNNAC	2 cut(s)	556, 826
Hpy188I	TCNGA	4 cut(s)	208, 342, 375, 528
Hpy188III	TCNNGA	4 cut(s)	290, 419, 431, 450
Hpy8I	GTNNAC	2 cut(s)	556, 826
Hpy99I	CGWCG	1 cut(s)	375
HpyAV	CCTTC	1 cut(s)	68
HpyCH4III	ACNGT	3 cut(s)	17, 126, 587
HpyCH4V	TGCA	6 cut(s)	28, 38, 441, 599, 704, 740
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	339, 458, 614, 778
Hsp92II	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
HspAI	GCGC	1 cut(s)	775
KspAI	GTTAAC	1 cut(s)	826
LmnI	GCTCC	2 cut(s)	82, 100
LpnPI	CCDG	9 cut(s)	123, 180, 231, 372, 404, 427, 574, 642, 765
Lsp1109I	GCAGC	5 cut(s)	284, 296, 681, 752, 819
LweI	GCATC	5 cut(s)	37, 95, 412, 455, 608
MaeI	CTAG	4 cut(s)	257, 392, 450, 767
MaeIII	GTNAC	1 cut(s)	334
MbiI	CCGCTC	1 cut(s)	85
MboII	GAAGA	5 cut(s)	11, 637, 699, 725, 796
MluCI	AATT	2 cut(s)	472, 502
MmeI	TCCRAC	1 cut(s)	353
Mph1103I	ATGCAT	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	301
MseI	TTAA	3 cut(s)	197, 224, 825
MslI	CAYNNNNRTG	1 cut(s)	735
MspI	CCGG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	110
Mva1269I	GAATGC	2 cut(s)	601, 777
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	110
NlaIII	CATG	7 cut(s)	62, 389, 434, 701, 764, 824, 832
NmuCI	GTSAC	1 cut(s)	334
NsiI	ATGCAT	1 cut(s)	601
NspI	RCATGY	2 cut(s)	389, 824
PagI	TCATGA	1 cut(s)	430
PctI	GAATGC	2 cut(s)	601, 777
PdmI	GAANNNNTTC	1 cut(s)	301
PfeI	GAWTC	4 cut(s)	62, 170, 329, 402
PkrI	GCNGC	6 cut(s)	87, 274, 286, 671, 742, 809
PspPI	GGNCC	1 cut(s)	544
RseI	CAYNNNNRTG	1 cut(s)	735
SaqAI	TTAA	3 cut(s)	197, 224, 825
SatI	GCNGC	6 cut(s)	86, 273, 285, 670, 741, 808
Sau96I	GGNCC	1 cut(s)	544
ScrFI	CCNGG	1 cut(s)	110
SetI	ASST	4 cut(s)	206, 289, 489, 520
SfaNI	GCATC	5 cut(s)	37, 95, 412, 455, 608
SinI	GGWCC	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	735
Sse9I	AATT	2 cut(s)	472, 502
SsiI	CCGC	2 cut(s)	85, 242
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	4 cut(s)	257, 392, 450, 767
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	2 cut(s)	391, 766
TaaI	ACNGT	3 cut(s)	17, 126, 587
TaqI	TCGA	1 cut(s)	305
TasI	AATT	2 cut(s)	472, 502
TauI	GCSGC	1 cut(s)	88
TfiI	GAWTC	4 cut(s)	62, 170, 329, 402
Tru1I	TTAA	3 cut(s)	197, 224, 825
Tru9I	TTAA	3 cut(s)	197, 224, 825
TscAI	CASTG	2 cut(s)	145, 225
TseFI	GTSAC	1 cut(s)	334
TseI	GCWGC	5 cut(s)	272, 284, 669, 740, 807
Tsp45I	GTSAC	1 cut(s)	334
TspDTI	ATGAA	3 cut(s)	17, 75, 786
TspRI	CASTG	2 cut(s)	145, 225
VpaK11BI	GGWCC	1 cut(s)	544
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	2 cut(s)	389, 824
XcmI	CCANNNNNNNNNTGG	2 cut(s)	65, 508
XmaJI	CCTAGG	2 cut(s)	391, 766
XmnI	GAANNNNTTC	1 cut(s)	301
XspI	CTAG	4 cut(s)	257, 392, 450, 767
Zsp2I	ATGCAT	1 cut(s)	601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.