Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004755

Physical Location & Seq

Genomic Coordinates Forward (+)

6460053 .. 6462230

Gene Structure 2178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1091500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGGAAGAGACGGGGAGGAAGAGGAGGATCGATGTCAGCAAGGTGCTGGATAGTCTCGACGACAGCGGCGATCCGCTTGAGAGGGTGGTTTTGCCGGAGTCAAAGCGGAAAGCTACGGCCGCGGAGGAGCAGCCGCCGAAGCAGTCCGGAATGGGGGGCGGTGATCAGCAGCGGGATTATTTATTCGAGGACATAGGCGATCGCGAGCTGGAGGAGAAGATTAAGCGGCAGAAGAGTAACATTGAGAAACTGAGCCGCAGCTTGCCGGACAAAGGCGAAAAGCTCCGGGTGGCTCTTATGCTGTTGGAGGACGAAAAGGAGCGGAGAAGATGCAGTCTGCTTGAAAAGAACACCAGTAGGTGGGAGGAGCTCGCACAAGCCACGAGCTGTAAAAACAGAAACATGGATGATTCTACTGGCTTCAAAAATGAGACTGCAGCACCTCTGGCAAAGCCAAAGTCTGAATTTGCTTGCCATTTTGAACAAAAGATGGAAGAAAAGTCTGATTCTAGGACAGCCAGTGAAACTCAAACAGAATCATCTCTTCTTCCATGCAACCGGCAGAGCATGAAAAGCAATGGAAAGTTATTGCAAAAAGGAGGACGGAAAGGTCGATCTTCATCAAGATACGTACCTCGTCAATGCTCTAGCAGTTTTAATCATAAACAAGAAAAATGTTCTCCTTCAAATGGTGGTCATAAAGGCGGGGCTTCTTTCCCTTGTTCACTTCGCCACGTTGCAGAAGACTTGTCTAGTTGTGGCAGAAACTGGAATGATGCTTCTCAAATAAATGGTTCAAGGCATCAAAAGCAGGGTCAGACAGTTGTAGAAATTCTGGATGAGGAGGATGCTGAACCTGCGGACACAGCAGAGCAAGAAGAAGAACTTCCCGAGGGAAATGATCCAAAATCTGTAGAAATCTGTTATGCGGACATTGGGTGCCTTGATCCTGAAGGCTACTTGACATCAACTATCATGAACTTCTACATTCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

333

Amino Acids

37.27

Weight (kDa)

5.47

Isoelectric Point (pI)

74.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10570 AT1G10570 AT1G10570 AT1G60220
fragaria_vesca	FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560
malus_domestica	MD13G1091500.v1.1
prunus_persica	Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1
pyrus_communis	pycom13g07950
rosa_chinensis	RchiOBHm_Chr3g0455541 RchiOBHm_Chr4g0443941
rosa_laevigata	RLG00000005875
rosa_multiflora	Rmu_sc0011390.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384480
rosa_rugosa	Rorug03G0008300 Rorug04G0348400 Rorug04G0348500
rosa_samantha	Rh4AG409000 Rh4BG420100 Rh4CG434100 Rh4DG415100
rosa_wichuraiana	Rw3G005410 Rw4G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	612
Acc36I	ACCTGC	1 cut(s)	868
AccB1I	GGYRCC	1 cut(s)	942
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	325
AccII	CGCG	2 cut(s)	125, 207
AccIII	TCCGGA	1 cut(s)	149
AclWI	GGATC	4 cut(s)	38, 68, 899, 944
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	2 cut(s)	467, 834
AcuI	CTGAAG	1 cut(s)	975
AfaI	GTAC	1 cut(s)	636
AfiI	CCNNNNNNNGG	4 cut(s)	156, 275, 363, 692
AgsI	TTSAA	5 cut(s)	347, 427, 485, 690, 801
AluBI	AGCT	6 cut(s)	116, 211, 264, 286, 373, 390
AluI	AGCT	6 cut(s)	116, 211, 264, 286, 373, 390
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	3 cut(s)	5, 62, 428
AlwI	GGATC	4 cut(s)	38, 68, 899, 944
AlwNI	CAGNNNCTG	1 cut(s)	771
Ama87I	CYCGRG	1 cut(s)	893
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	133, 172, 261, 440
ApoI	RAATTY	2 cut(s)	467, 834
ArsI	GACNNNNNNTTYG	4 cut(s)	446, 478, 802, 834
AsiSI	GCGATCGC	1 cut(s)	205
Asp700I	GAANNNNTTC	1 cut(s)	888
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	893
BanI	GGYRCC	1 cut(s)	942
BanII	GRGCYC	1 cut(s)	375
BauI	CACGAG	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	753
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	4 cut(s)	145, 184, 273, 452
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	166
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	3 cut(s)	5, 62, 428
BfaI	CTAG	3 cut(s)	513, 651, 756
BfmI	CTRYAG	2 cut(s)	438, 915
BfuAI	ACCTGC	1 cut(s)	868
BisI	GCNGC	9 cut(s)	70, 123, 134, 137, 173, 230, 259, 262, 441
BlsI	GCNGC	9 cut(s)	71, 124, 135, 138, 174, 231, 260, 263, 442
Bme1390I	CCNGG	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	893
BmiI	GGNNCC	1 cut(s)	944
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	4 cut(s)	323, 769, 814, 841
BpiI	GAAGAC	1 cut(s)	753
BpmI	CTGGAG	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	101
BpuMI	CCSGG	1 cut(s)	290
Bsa29I	ATCGAT	1 cut(s)	33
BsaAI	YACGTR	1 cut(s)	634
BsaBI	GATNNNNATC	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	123, 894
BsaWI	WCCGGW	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	4 cut(s)	156, 275, 363, 692
Bse118I	RCCGGY	1 cut(s)	561
Bse1I	ACTGG	4 cut(s)	357, 424, 522, 776
Bse3DI	GCAATG	1 cut(s)	586
Bse8I	GATNNNNATC	1 cut(s)	622
BseAI	TCCGGA	1 cut(s)	149
BseCI	ATCGAT	1 cut(s)	33
BseDI	CCNNGG	2 cut(s)	123, 894
BseGI	GGATG	3 cut(s)	415, 847, 856
BseJI	GATNNNNATC	1 cut(s)	622
BseLI	CCNNNNNNNGG	4 cut(s)	156, 275, 363, 692
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	4 cut(s)	357, 424, 522, 776
BseRI	GAGGAG	5 cut(s)	40, 143, 230, 383, 860
BseX3I	CGGCCG	1 cut(s)	120
BseXI	GCAGC	4 cut(s)	145, 184, 273, 452
Bsh1236I	CGCG	2 cut(s)	125, 207
Bsh1285I	CGRYCG	2 cut(s)	123, 205
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	942
BshVI	ATCGAT	1 cut(s)	33
BsiEI	CGRYCG	2 cut(s)	123, 205
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	1 cut(s)	893
BsiSI	CCGG	5 cut(s)	98, 150, 269, 289, 562
BslI	CCNNNNNNNGG	4 cut(s)	156, 275, 363, 692
BsmAI	GTCTC	3 cut(s)	5, 62, 428
BsmBI	CGTCTC	1 cut(s)	5
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	893
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
Bsp68I	TCGCGA	1 cut(s)	207
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	246
BspDI	ATCGAT	1 cut(s)	33
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	2 cut(s)	125, 207
BspHI	TCATGA	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	944
BspMAI	CTGCAG	1 cut(s)	442
BspMI	ACCTGC	1 cut(s)	868
BspPI	GGATC	4 cut(s)	38, 68, 899, 944
BspT107I	GGYRCC	1 cut(s)	942
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	586
BsrFI	RCCGGY	1 cut(s)	561
BsrI	ACTGG	4 cut(s)	357, 424, 522, 776
BssAI	RCCGGY	1 cut(s)	561
BssECI	CCNNGG	2 cut(s)	123, 894
BssMI	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
BssSI	CACGAG	1 cut(s)	385
Bst2BI	CACGAG	1 cut(s)	385
Bst4CI	ACNGT	1 cut(s)	826
Bst6I	CTCTTC	4 cut(s)	3, 17, 230, 552
BstBAI	YACGTR	1 cut(s)	634
BstC8I	GCNNGC	4 cut(s)	209, 266, 375, 475
BstDEI	CTNAG	1 cut(s)	254
BstDSI	CCRYGG	1 cut(s)	123
BstF5I	GGATG	3 cut(s)	415, 847, 856
BstFNI	CGCG	2 cut(s)	125, 207
BstKTI	GATC	7 cut(s)	33, 76, 169, 205, 620, 907, 952
BstMAI	GTCTC	3 cut(s)	5, 62, 428
BstMBI	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
BstMCI	CGRYCG	2 cut(s)	123, 205
BstMWI	GCNNNNNNNGC	7 cut(s)	122, 142, 449, 576, 811, 860, 869
BstSCI	CCNGG	1 cut(s)	288
BstSFI	CTRYAG	2 cut(s)	438, 915
BstSNI	TACGTA	1 cut(s)	634
BstUI	CGCG	2 cut(s)	125, 207
BstV1I	GCAGC	4 cut(s)	145, 184, 273, 452
BstV2I	GAAGAC	1 cut(s)	753
BstZI	CGGCCG	1 cut(s)	120
Bsu15I	ATCGAT	1 cut(s)	33
BsuRI	GGCC	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	33
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	3 cut(s)	415, 847, 856
BtsIMutI	CAGTG	1 cut(s)	529
BtuMI	TCGCGA	1 cut(s)	207
BveI	ACCTGC	1 cut(s)	868
Cac8I	GCNNGC	4 cut(s)	209, 266, 375, 475
CaiI	CAGNNNCTG	1 cut(s)	771
CciI	TCATGA	1 cut(s)	978
Cfr10I	RCCGGY	1 cut(s)	561
Cfr42I	CCGCGG	1 cut(s)	126
ClaI	ATCGAT	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	635
CviAII	CATG	4 cut(s)	406, 555, 571, 979
CviQI	GTAC	1 cut(s)	635
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	7 cut(s)	32, 75, 168, 204, 619, 906, 951
DpnII	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
DrdI	GACNNNNNNGTC	1 cut(s)	612
DseDI	GACNNNNNNGTC	1 cut(s)	612
EaeI	YGGCCR	1 cut(s)	120
EagI	CGGCCG	1 cut(s)	120
Eam1104I	CTCTTC	4 cut(s)	3, 17, 230, 552
EarI	CTCTTC	4 cut(s)	3, 17, 230, 552
Ecl136II	GAGCTC	1 cut(s)	373
EclXI	CGGCCG	1 cut(s)	120
Eco105I	TACGTA	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	375
Eco52I	CGGCCG	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	975
Eco88I	CYCGRG	1 cut(s)	893
EcoICRI	GAGCTC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	375
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	4 cut(s)	409, 558, 574, 982
FaiI	YATR	9 cut(s)	197, 302, 407, 556, 572, 666, 702, 930, 980
FalI	AAGNNNNNCTT	2 cut(s)	873, 905
FatI	CATG	4 cut(s)	405, 554, 570, 978
FauI	CCCGC	2 cut(s)	168, 701
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	9 cut(s)	70, 123, 134, 137, 173, 230, 259, 262, 441
FokI	GGATG	3 cut(s)	422, 854, 863
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	9 cut(s)	70, 123, 134, 137, 173, 230, 259, 262, 441
FspBI	CTAG	3 cut(s)	513, 651, 756
GluI	GCNGC	9 cut(s)	70, 123, 134, 137, 173, 230, 259, 262, 441
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	5 cut(s)	98, 150, 269, 289, 562
Hin1II	CATG	4 cut(s)	409, 558, 574, 982
HinfI	GANTC	4 cut(s)	101, 413, 509, 539
HpaII	CCGG	5 cut(s)	98, 150, 269, 289, 562
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	728
Hpy188I	TCNGA	3 cut(s)	466, 508, 822
Hpy188III	TCNNGA	8 cut(s)	59, 150, 206, 627, 839, 893, 953, 979
Hpy8I	GTNNAC	1 cut(s)	728
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	696, 950
HpyCH4III	ACNGT	1 cut(s)	826
HpyCH4IV	ACGT	2 cut(s)	633, 738
HpyCH4V	TGCA	5 cut(s)	336, 440, 558, 595, 743
HpyF10VI	GCNNNNNNNGC	7 cut(s)	122, 142, 449, 576, 811, 860, 869
HpyF3I	CTNAG	1 cut(s)	254
HpySE526I	ACGT	2 cut(s)	633, 738
Hsp92II	CATG	4 cut(s)	409, 558, 574, 982
Kpn2I	TCCGGA	1 cut(s)	149
Ksp22I	TGATCA	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	126
Kzo9I	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
LmnI	GCTCC	4 cut(s)	130, 291, 322, 370
Lsp1109I	GCAGC	4 cut(s)	145, 184, 273, 452
LweI	GCATC	4 cut(s)	323, 769, 814, 841
MaeI	CTAG	3 cut(s)	513, 651, 756
MaeII	ACGT	2 cut(s)	633, 738
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	7 cut(s)	32, 75, 168, 204, 619, 906, 951
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	467, 834
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	149
MroXI	GAANNNNTTC	1 cut(s)	888
MseI	TTAA	2 cut(s)	225, 660
MspA1I	CMGCKG	3 cut(s)	69, 125, 175
MspI	CCGG	5 cut(s)	98, 150, 269, 289, 562
MspR9I	CCNGG	1 cut(s)	290
MvnI	CGCG	2 cut(s)	125, 207
MwoI	GCNNNNNNNGC	7 cut(s)	122, 142, 449, 576, 811, 860, 869
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
NlaIII	CATG	4 cut(s)	409, 558, 574, 982
NlaIV	GGNNCC	1 cut(s)	944
NruI	TCGCGA	1 cut(s)	207
PagI	TCATGA	1 cut(s)	978
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 613
PdmI	GAANNNNTTC	1 cut(s)	888
PfeI	GAWTC	3 cut(s)	413, 509, 539
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	9 cut(s)	71, 124, 135, 138, 174, 231, 260, 263, 442
Ple19I	CGATCG	1 cut(s)	205
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	634
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	944
PstI	CTGCAG	1 cut(s)	442
PstNI	CAGNNNCTG	1 cut(s)	771
PvuI	CGATCG	1 cut(s)	205
RgaI	GCGATCGC	1 cut(s)	205
RruI	TCGCGA	1 cut(s)	207
RsaI	GTAC	1 cut(s)	636
RsaNI	GTAC	1 cut(s)	635
SacI	GAGCTC	1 cut(s)	375
SacII	CCGCGG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	225, 660
SatI	GCNGC	9 cut(s)	70, 123, 134, 137, 173, 230, 259, 262, 441
Sau3AI	GATC	7 cut(s)	30, 73, 166, 202, 617, 904, 949
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	375
SfaAI	GCGATCGC	1 cut(s)	205
SfaNI	GCATC	4 cut(s)	323, 769, 814, 841
SfcI	CTRYAG	2 cut(s)	438, 915
Sfr303I	CCGCGG	1 cut(s)	126
SgfI	GCGATCGC	1 cut(s)	205
SgrBI	CCGCGG	1 cut(s)	126
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
SnaBI	TACGTA	1 cut(s)	634
Sse9I	AATT	2 cut(s)	467, 834
SspMI	CTAG	3 cut(s)	513, 651, 756
SstI	GAGCTC	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	826
TaiI	ACGT	2 cut(s)	636, 741
TaqI	TCGA	4 cut(s)	33, 60, 189, 616
TasI	AATT	2 cut(s)	467, 834
TauI	GCSGC	5 cut(s)	72, 125, 139, 232, 261
TfiI	GAWTC	3 cut(s)	413, 509, 539
Tru1I	TTAA	2 cut(s)	225, 660
Tru9I	TTAA	2 cut(s)	225, 660
TscAI	CASTG	1 cut(s)	529
TseI	GCWGC	4 cut(s)	133, 172, 261, 440
TspDTI	ATGAA	3 cut(s)	587, 612, 995
TspGWI	ACGGA	1 cut(s)	622
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	467, 834
XmnI	GAANNNNTTC	1 cut(s)	888
XspI	CTAG	3 cut(s)	513, 651, 756

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.