FvH4_4g34560

Ubiquitin-like-specific protease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
32265221 .. 32270384
5164 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34560.t3

Sequence Viewer

Length: 1695 bp
ATGGAAGGAGAGAGAGCCGAGAAGAAGAGGCCGCTTGCTATTGACTTCAACAAGCTCTTGGATGGCAATGACGATTTTGACCCGCCGGAGGTTCTCAGAGTGAAGAAGACCAAGCCCGTCACCATCGCCGCCGACGAGACACCGAAACGGGCGGCGATGGGCGGCGGCGATGAGCTAAGGGATGAGGAACTTGAGAGGGTGAGCAATAAGGACCTGGATGATTTGATTGGGCGGCAAAGAGCACATGTGAAGATGTTGGCTCCAAAATTGCCAGACAAAGGCGAAAAGCTGAGGGTTCGTTTGAAGAAAATGGAGGATGAGCAGCAGAGGAGGATTGAACACCCAGAGAGGTATATCAGTATGGTGGAGAAGCCTACCGGAGCGACCAGCTCTGCAGGTGTTTCTAGTGGCTTCAGAGAGGAGGCTACATCATCTCCAGGCGAGCGAGGGGCTTCATTTTTAAAACTCTTTTCTCAAAAGCTGGATGACGATAGAGATTCTAACAAGGGAAATGCATTTGAAAGAGAATTTTCAACTTTGGGTCACTGCAACCGCCAGAAAAAGAACAATAATGGAGCATTCGTGCCAAAGGGGGCACAGAAAAGTCGATCTTCATCAAGACAATTCCCTTTTCAAAGCCCTAGCAACTTCTATCGTGATAAAGATAAAACTTCTCTCTCAAATGGTGATCGTAAAGGCAAAGCTTCTTCCAATAACTCAGGTTATCAGTGTGAGGAAAACTCCTCCAGCAGCTTTGCAAAAAAGGAGGATCATTATCAACTTCGGAATAGGACCAGGAAGAGTCAGACCATTTTACTTGTGGATGAGGAGGAACCTGAGTTCACAGACACCACAGAGCAAACAGAAGAAATTCCTGAGAGCATGAAAGACTCCAGAATCTACTATCCATCAAGGGATGATCCACATTCCGTTGAAATTTGTTATGCAGACACTAAGTGCCTTGATCCTCAAAGCTACCTGACATCAGCAATTATGAATTTCTACATACGGTATTTGCATCAACAAGCATCCCCTACAGACACGGGAAGTTGTGCATTTCATTTCTTCAATACCTTTTTTTACAATAAGCTCAAAGATGCTGTATCAGAAAAGGGAGCTAACAAGGATAACCGCTTTGTCAAGCTTAGAAGGTGGTGGAAGGGTGTTGATATGTTTCAGAAGGCTTACATACTTATTCCTATAAATGAAGACGTTCATTGGAGCCTTGTCATTATCTGTATCCCTGACAAGGAAGAAGAATCAGGACCACTTGTTCTTCATTTAGACTCATTAGGACTCCATTGTAGCAAATCCATTTTTCGAATTATTAAAAGCTTTTTAAAAGAAGAATGGTGCTATTTGGATGAAGTTGATATTTTAGATCTAACAGTTTCAGACTGTTGGAAACGACTTCCTGACCATATTGAGGAGAAAAGACTTCCGGTCCCGCAACAGAAAAATGACTATGACTGTGGTCTTTTTGTACTCTTGTTTATGGAACACTTCATAGAAGACGCTCCTGAAAGGCTAAAAAAGAAAGATTTATCAATGTTTGGCAGGCAGTGGTTCCAACCTCAAGAGGCTTCTAGGTTGAGAAACAAAATCCGTAAGTTACTCAAGGAAGAATTTCAAAATGCATCCAAGTCTAACCGCTCTAAAGAACCTTCTCCTCTGAGTGATGGTTCTGAAGAATGA

Protein Analysis

565

Amino Acids

65.09

Weight (kDa)

6.52

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 326 - 370 2.9e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 386
Acc36I ACCTGC 1 cut(s) 386
AccBSI CCGCTC 1 cut(s) 1653
AclWI GGATC 3 cut(s) 777, 914, 959
AcsI RAATTY 5 cut(s) 527, 870, 936, 997, 1625
AcuI CTGAAG 1 cut(s) 397
AdeI CACNNNGTG 1 cut(s) 957
AfaI GTAC 1 cut(s) 1485
AfiI CCNNNNNNNGG 4 cut(s) 88, 278, 1249, 1426
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 9 cut(s) 49, 304, 338, 521, 534, 635, 935, 1069, 1631
AhdI GACNNNNNGTC 1 cut(s) 1442
AjnI CCWGG 3 cut(s) 213, 436, 794
AloI GAACNNNNNNTCC 4 cut(s) 824, 856, 1257, 1289
Alw21I GWGCWC 1 cut(s) 244
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 3 cut(s) 777, 914, 959
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 2 cut(s) 322, 750
ApoI RAATTY 5 cut(s) 527, 870, 936, 997, 1625
Asp700I GAANNNNTTC 3 cut(s) 870, 1212, 1626
AspS9I GGNCC 4 cut(s) 211, 792, 1265, 1444
AsuHPI GGTGA 3 cut(s) 112, 211, 698
AsuII TTCGAA 1 cut(s) 1321
AvaII GGWCC 4 cut(s) 211, 792, 1265, 1444
BaeGI GKGCMC 1 cut(s) 598
BbsI GAAGAC 3 cut(s) 113, 1215, 1518
Bbv12I GWGCWC 1 cut(s) 244
BbvCI CCTCAGC 1 cut(s) 290
BbvI GCAGC 2 cut(s) 334, 762
BccI CCATC 5 cut(s) 56, 131, 151, 916, 1673
BciT130I CCWGG 3 cut(s) 215, 438, 796
BciVI GTATCC 1 cut(s) 1250
BcoDI GTCTC 1 cut(s) 131
BfaI CTAG 3 cut(s) 405, 642, 1587
BfmI CTRYAG 2 cut(s) 393, 1035
BfuAI ACCTGC 1 cut(s) 386
BfuI GTATCC 1 cut(s) 1250
BglII AGATCT 1 cut(s) 1381
BisI GCNGC 8 cut(s) 32, 129, 153, 163, 166, 233, 323, 751
BlsI GCNGC 8 cut(s) 33, 130, 154, 164, 167, 234, 324, 752
Bme1390I CCNGG 3 cut(s) 215, 438, 796
Bme18I GGWCC 4 cut(s) 211, 792, 1265, 1444
BmeRI GACNNNNNGTC 1 cut(s) 1442
BmgT120I GGNCC 4 cut(s) 211, 792, 1265, 1444
BmiI GGNNCC 5 cut(s) 261, 834, 1223, 1446, 1568
BmrFI CCNGG 3 cut(s) 215, 438, 796
BmsI GCATC 4 cut(s) 1027, 1037, 1087, 1646
BoxI GACNNNNGTC 1 cut(s) 1473
BpiI GAAGAC 3 cut(s) 113, 1215, 1518
BplI GAGNNNNNCTC 2 cut(s) 725, 757
BpmI CTGGAG 3 cut(s) 420, 730, 877
Bpu10I CCTNAGC 2 cut(s) 176, 290
Bpu14I TTCGAA 1 cut(s) 1321
BpuEI CTTGAG 3 cut(s) 212, 1560, 1601
BsaBI GATNNNNATC 2 cut(s) 613, 774
BsaWI WCCGGW 2 cut(s) 377, 1441
BsaXI ACNNNNNCTCC 4 cut(s) 418, 448, 567, 597
Bsc4I CCNNNNNNNGG 4 cut(s) 88, 278, 1249, 1426
Bse3DI GCAATG 1 cut(s) 73
Bse8I GATNNNNATC 2 cut(s) 613, 774
BseBI CCWGG 3 cut(s) 215, 438, 796
BseJI GATNNNNATC 2 cut(s) 613, 774
BseLI CCNNNNNNNGG 4 cut(s) 88, 278, 1249, 1426
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 6 cut(s) 109, 281, 732, 828, 867, 1664
BseRI GAGGAG 6 cut(s) 343, 434, 733, 842, 1442, 1659
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 2 cut(s) 334, 762
BshFI GGCC 1 cut(s) 31
BsiHKAI GWGCWC 1 cut(s) 244
BsiSI CCGG 3 cut(s) 86, 378, 1442
BslFI GGGAC 1 cut(s) 1430
BslI CCNNNNNNNGG 4 cut(s) 88, 278, 1249, 1426
BsmAI GTCTC 1 cut(s) 131
BsmFI GGGAC 1 cut(s) 1430
BsmI GAATGC 1 cut(s) 578
BsnI GGCC 1 cut(s) 31
Bsp119I TTCGAA 1 cut(s) 1321
Bsp1286I GDGCHC 2 cut(s) 244, 598
Bsp143I GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 6 cut(s) 108, 282, 731, 829, 868, 1665
BspLI GGNNCC 5 cut(s) 261, 834, 1223, 1446, 1568
BspMAI CTGCAG 1 cut(s) 397
BspMI ACCTGC 1 cut(s) 386
BspPI GGATC 3 cut(s) 777, 914, 959
BspT104I TTCGAA 1 cut(s) 1321
BsrBI CCGCTC 1 cut(s) 1653
BsrDI GCAATG 1 cut(s) 73
BssMI GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
Bst2UI CCWGG 3 cut(s) 215, 438, 796
Bst4CI ACNGT 4 cut(s) 1011, 1390, 1400, 1472
Bst6I CTCTTC 2 cut(s) 20, 794
BstBI TTCGAA 1 cut(s) 1321
BstC8I GCNNGC 3 cut(s) 36, 443, 1559
BstDEI CTNAG 9 cut(s) 95, 176, 290, 718, 837, 876, 954, 1145, 1673
BstKTI GATC 6 cut(s) 611, 691, 772, 922, 967, 1384
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
BstNI CCWGG 3 cut(s) 215, 438, 796
BstNSI RCATGY 1 cut(s) 248
BstPAI GACNNNNGTC 1 cut(s) 1473
BstSCI CCNGG 3 cut(s) 213, 436, 794
BstSFI CTRYAG 2 cut(s) 393, 1035
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 334, 762
BstV2I GAAGAC 3 cut(s) 113, 1215, 1518
BstX2I RGATCY 1 cut(s) 1381
BstYI RGATCY 1 cut(s) 1381
BsuI GTATCC 1 cut(s) 1250
BsuRI GGCC 1 cut(s) 31
BtgZI GCGATG 3 cut(s) 109, 170, 183
BtsI GCAGTG 2 cut(s) 544, 1568
BtsIMutI CAGTG 3 cut(s) 544, 734, 1568
BveI ACCTGC 1 cut(s) 386
Cac8I GCNNGC 3 cut(s) 36, 443, 1559
Cfr13I GGNCC 4 cut(s) 211, 792, 1265, 1444
CseI GACGC 1 cut(s) 1523
Csp6I GTAC 1 cut(s) 1484
CviAII CATG 2 cut(s) 245, 883
CviQI GTAC 1 cut(s) 1484
DdeI CTNAG 9 cut(s) 95, 176, 290, 718, 837, 876, 954, 1145, 1673
DpnI GATC 6 cut(s) 610, 690, 771, 921, 966, 1383
DpnII GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
DraI TTTAAA 2 cut(s) 462, 1341
DraIII CACNNNGTG 1 cut(s) 957
DriI GACNNNNNGTC 1 cut(s) 1442
Eam1104I CTCTTC 2 cut(s) 20, 794
Eam1105I GACNNNNNGTC 1 cut(s) 1442
EarI CTCTTC 2 cut(s) 20, 794
Eco47I GGWCC 4 cut(s) 211, 792, 1265, 1444
Eco57I CTGAAG 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 211
EcoRII CCWGG 3 cut(s) 213, 436, 794
EcoT22I ATGCAT 2 cut(s) 517, 1639
FaeI CATG 2 cut(s) 248, 886
FalI AAGNNNNNCTT 2 cut(s) 595, 627
FaqI GGGAC 1 cut(s) 1430
FatI CATG 2 cut(s) 244, 882
FauI CCCGC 2 cut(s) 90, 1455
Fnu4HI GCNGC 8 cut(s) 32, 129, 153, 163, 166, 233, 323, 751
Fsp4HI GCNGC 8 cut(s) 32, 129, 153, 163, 166, 233, 323, 751
FspBI CTAG 3 cut(s) 405, 642, 1587
GluI GCNGC 8 cut(s) 32, 129, 153, 163, 166, 233, 323, 751
GsuI CTGGAG 3 cut(s) 420, 730, 877
HaeIII GGCC 1 cut(s) 31
HapII CCGG 3 cut(s) 86, 378, 1442
HgaI GACGC 1 cut(s) 1523
Hin1II CATG 2 cut(s) 248, 886
HindIII AAGCTT 3 cut(s) 702, 1142, 1333
HinfI GANTC 7 cut(s) 497, 802, 890, 897, 1259, 1286, 1296
HpaII CCGG 3 cut(s) 86, 378, 1442
HphI GGTGA 3 cut(s) 112, 211, 698
Hpy166II GTNNAC 1 cut(s) 843
Hpy188I TCNGA 9 cut(s) 98, 416, 786, 807, 1108, 1179, 1396, 1674, 1687
Hpy188III TCNNGA 8 cut(s) 618, 656, 875, 894, 1263, 1415, 1520, 1577
Hpy8I GTNNAC 1 cut(s) 843
Hpy99I CGWCG 1 cut(s) 137
HpyAV CCTTC 4 cut(s) 1143, 1153, 1174, 1674
HpyCH4III ACNGT 4 cut(s) 1011, 1390, 1400, 1472
HpyCH4IV ACGT 1 cut(s) 1212
HpyCH4V TGCA 8 cut(s) 395, 515, 549, 758, 947, 1018, 1055, 1637
HpyF3I CTNAG 9 cut(s) 95, 176, 290, 718, 837, 876, 954, 1145, 1673
HpySE526I ACGT 1 cut(s) 1212
Hsp92II CATG 2 cut(s) 248, 886
Kzo9I GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
LmnI GCTCC 6 cut(s) 265, 380, 575, 1115, 1221, 1522
Lsp1109I GCAGC 2 cut(s) 334, 762
LweI GCATC 4 cut(s) 1027, 1037, 1087, 1646
MaeI CTAG 3 cut(s) 405, 642, 1587
MaeII ACGT 1 cut(s) 1212
MaeIII GTNAC 3 cut(s) 118, 542, 1611
MalI GATC 6 cut(s) 610, 690, 771, 921, 966, 1383
MbiI CCGCTC 1 cut(s) 1653
MboI GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
MflI RGATCY 1 cut(s) 1381
MhlI GDGCHC 2 cut(s) 244, 598
MluCI AATT 9 cut(s) 266, 527, 623, 870, 936, 990, 997, 1323, 1625
MlyI GAGTC 4 cut(s) 811, 884, 1280, 1290
MmeI TCCRAC 2 cut(s) 1382, 1594
Mph1103I ATGCAT 2 cut(s) 517, 1639
MroXI GAANNNNTTC 3 cut(s) 870, 1212, 1626
MseI TTAA 3 cut(s) 461, 1329, 1340
MspI CCGG 3 cut(s) 86, 378, 1442
MspR9I CCNGG 3 cut(s) 215, 438, 796
Mva1269I GAATGC 1 cut(s) 578
MvaI CCWGG 3 cut(s) 215, 438, 796
NdeII GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
NlaIII CATG 2 cut(s) 248, 886
NlaIV GGNNCC 5 cut(s) 261, 834, 1223, 1446, 1568
NmeAIII GCCGAG 1 cut(s) 43
NmuCI GTSAC 2 cut(s) 118, 542
NsiI ATGCAT 2 cut(s) 517, 1639
NspI RCATGY 1 cut(s) 248
NspV TTCGAA 1 cut(s) 1321
PaqCI CACCTGC 1 cut(s) 386
PciI ACATGT 1 cut(s) 244
PcsI WCGNNNNNNNCGW 1 cut(s) 132
PctI GAATGC 1 cut(s) 578
PdmI GAANNNNTTC 3 cut(s) 870, 1212, 1626
PfeI GAWTC 3 cut(s) 497, 897, 1259
PkrI GCNGC 8 cut(s) 33, 130, 154, 164, 167, 234, 324, 752
PleI GAGTC 4 cut(s) 810, 884, 1280, 1290
PpsI GAGTC 4 cut(s) 810, 884, 1280, 1290
PpuMI RGGWCCY 1 cut(s) 211
PscI ACATGT 1 cut(s) 244
PshAI GACNNNNGTC 1 cut(s) 1473
Psp5II RGGWCCY 1 cut(s) 211
Psp6I CCWGG 3 cut(s) 213, 436, 794
PspGI CCWGG 3 cut(s) 213, 436, 794
PspN4I GGNNCC 5 cut(s) 261, 834, 1223, 1446, 1568
PspPI GGNCC 4 cut(s) 211, 792, 1265, 1444
PspPPI RGGWCCY 1 cut(s) 211
PstI CTGCAG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 1381
RsaI GTAC 1 cut(s) 1485
RsaNI GTAC 1 cut(s) 1484
SaqAI TTAA 3 cut(s) 461, 1329, 1340
SatI GCNGC 8 cut(s) 32, 129, 153, 163, 166, 233, 323, 751
Sau3AI GATC 6 cut(s) 608, 688, 769, 919, 964, 1381
Sau96I GGNCC 4 cut(s) 211, 792, 1265, 1444
SchI GAGTC 4 cut(s) 811, 884, 1280, 1290
ScrFI CCNGG 3 cut(s) 215, 438, 796
SduI GDGCHC 2 cut(s) 244, 598
SfaNI GCATC 4 cut(s) 1027, 1037, 1087, 1646
SfcI CTRYAG 2 cut(s) 393, 1035
SfuI TTCGAA 1 cut(s) 1321
SinI GGWCC 4 cut(s) 211, 792, 1265, 1444
SmlI CTYRAG 3 cut(s) 191, 1575, 1616
SmoI CTYRAG 3 cut(s) 191, 1575, 1616
Sse9I AATT 9 cut(s) 266, 527, 623, 870, 936, 990, 997, 1323, 1625
SspMI CTAG 3 cut(s) 405, 642, 1587
StyD4I CCNGG 3 cut(s) 213, 436, 794
TaaI ACNGT 4 cut(s) 1011, 1390, 1400, 1472
TaiI ACGT 1 cut(s) 1215
TaqI TCGA 2 cut(s) 607, 1321
TasI AATT 9 cut(s) 266, 527, 623, 870, 936, 990, 997, 1323, 1625
TatI WGTACW 1 cut(s) 1483
TauI GCSGC 6 cut(s) 34, 131, 155, 165, 168, 235
TfiI GAWTC 3 cut(s) 497, 897, 1259
Tru1I TTAA 3 cut(s) 461, 1329, 1340
Tru9I TTAA 3 cut(s) 461, 1329, 1340
TscAI CASTG 3 cut(s) 551, 734, 1568
TseFI GTSAC 2 cut(s) 118, 542
TseI GCWGC 2 cut(s) 322, 750
Tsp45I GTSAC 2 cut(s) 118, 542
TspGWI ACGGA 2 cut(s) 919, 1595
TspRI CASTG 3 cut(s) 551, 734, 1568
VpaK11BI GGWCC 4 cut(s) 211, 792, 1265, 1444
XapI RAATTY 5 cut(s) 527, 870, 936, 997, 1625
XceI RCATGY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 1 cut(s) 817
XmnI GAANNNNTTC 3 cut(s) 870, 1212, 1626
XspI CTAG 3 cut(s) 405, 642, 1587
Zsp2I ATGCAT 2 cut(s) 517, 1639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.