Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004755

Physical Location & Seq

Genomic Coordinates Forward (+)

5232334 .. 5235856

Gene Structure 3523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42246

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGGAAGTGGTGCGAACACCGACGACAGGAGATACTTCAAGCATGTTATCCCATTACCGAAGACCAGAGCTACTCCAAGCATCTTCGATTTCGAGCCGGAGGAATCCAGTGAGTTGGAGAGGCCCAATCAAGCTACAATCTCTGGGAACACAGGTGTTCCCAAGGGATTAAGAAAGGATGGTAGACCACCTCTGGTGAAGCTAACAGCAGCTAGACTTTTTCGTCCACCAATGGTCAAATTTGAATCATTTGATGACAATACAGATTGTATAATGGGCAATGCATTTGGTAGAGAATCCTTGGGTCTGGGCAATACACAAAACAAAGGAGAATTCTTGCAAAAGGGGGCACAAAAAGGTCTACACTCATCAAGACAGTTGCCTTCTCAAAGCCCTGCGTCTTCCACTTACTCAGATCCTCACATTTGGGAAAATATGGAAAGCTTCTCTGCCAAAACCATGAAAGAGTCTATCTACTATCCATCAAGGGATGATCCAGATTCCGTTGAAATTTGTTATAAACACATCAAGTGCCTTGATCCTCAAACACCCTTGACATCACCTGTTATGAATTTTTACATACGATATCTACATCAACAAGCATCTTCCAGTAGGGCAACATTTCATTTCTTTAATACCTTCTTTTACAACAAGCTCAGAAATGTTGTATCAGAACAGAAGAACAACAAGAAAAACCCTTTTGACAAGCTTAGAAGGTGGTGGAAAGGTGTTCATTTATTACAGAAGGCATACATACTTATTCCTGTAAATGACATGTTTCATTGGAGTCTAGTCATTATCTGTATCCCTGACAAGGAAGAATCACAACCAATTGTTCTTCATTTAGATTCGTCAGGACTCCACTGTAGCAGATCAATTTTTCAAAATATTACAAGCTTTTTGAAAGAAGAGTGCTGCTATTTGGATCATGAAGCTGGTCTTTCAGATCTTCCAATTTCAGGCTATTGGAAATACCTTTGTGACCATATTGAGGAGAAAGTTCTCGAGGTCCCACAACAGAAAAATCACTATGATTGCGGTCTCTTTGTACTTCTCTTTATGGAGCGCTTCATTGAAGAGGCCCCTGAAAGGCTGCAGAAGAAAGATTTAGCAGTGGTACTCTATTCCGCTACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

378

Amino Acids

43.49

Weight (kDa)

7.19

Isoelectric Point (pI)

61.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	185 - 370	2e-33	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10570 AT1G10570 AT1G10570 AT1G60220
fragaria_vesca	FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560
malus_domestica	MD13G1091500.v1.1
prunus_persica	Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1
pyrus_communis	pycom13g07950
rosa_chinensis	RchiOBHm_Chr3g0455541 RchiOBHm_Chr4g0443941
rosa_laevigata	RLG00000005875
rosa_multiflora	Rmu_sc0011390.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384480
rosa_rugosa	Rorug03G0008300 Rorug04G0348400 Rorug04G0348500
rosa_samantha	Rh4AG409000 Rh4BG420100 Rh4CG434100 Rh4DG415100
rosa_wichuraiana	Rw3G005410 Rw4G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	519
AasI	GACNNNNNNGTC	1 cut(s)	222
AccI	GTMKAC	2 cut(s)	184, 361
AciI	CCGC	2 cut(s)	1038, 1128
AclWI	GGATC	4 cut(s)	410, 488, 533, 933
AcsI	RAATTY	4 cut(s)	239, 332, 510, 571
AfaI	GTAC	2 cut(s)	1050, 1119
AfeI	AGCGCT	1 cut(s)	1067
AfiI	CCNNNNNNNGG	5 cut(s)	27, 814, 959, 991, 1089
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	40, 245, 509, 884, 904, 1076
AluBI	AGCT	9 cut(s)	71, 134, 202, 212, 444, 655, 709, 897, 935
AluI	AGCT	9 cut(s)	71, 134, 202, 212, 444, 655, 709, 897, 935
Alw26I	GTCTC	1 cut(s)	1046
AlwI	GGATC	4 cut(s)	410, 488, 533, 933
Ama87I	CYCGRG	1 cut(s)	1004
Aor51HI	AGCGCT	1 cut(s)	1067
AoxI	GGCC	2 cut(s)	122, 1080
ApeKI	GCWGC	3 cut(s)	209, 915, 1093
ApoI	RAATTY	4 cut(s)	239, 332, 510, 571
AspLEI	GCGC	1 cut(s)	1068
AspS9I	GGNCC	3 cut(s)	123, 1009, 1081
AsuHPI	GGTGA	2 cut(s)	208, 552
AvaI	CYCGRG	1 cut(s)	1004
AvaII	GGWCC	1 cut(s)	1009
BaeGI	GKGCMC	1 cut(s)	352
BbsI	GAAGAC	2 cut(s)	68, 393
BbvI	GCAGC	3 cut(s)	221, 902, 1080
BccI	CCATC	2 cut(s)	173, 490
BciVI	GTATCC	1 cut(s)	815
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	2 cut(s)	213, 791
BfmI	CTRYAG	2 cut(s)	865, 1094
BfoI	RGCGCY	1 cut(s)	1069
BfuI	GTATCC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	946
BisI	GCNGC	3 cut(s)	210, 916, 1094
BlsI	GCNGC	3 cut(s)	211, 917, 1095
Bme18I	GGWCC	1 cut(s)	1009
BmeT110I	CYCGRG	1 cut(s)	1004
BmgT120I	GGNCC	3 cut(s)	123, 1009, 1081
BmiI	GGNNCC	2 cut(s)	1011, 1083
BmsI	GCATC	2 cut(s)	90, 611
BpiI	GAAGAC	2 cut(s)	68, 393
BsaI	GGTCTC	1 cut(s)	1046
BsaJI	CCNNGG	2 cut(s)	162, 300
Bsc4I	CCNNNNNNNGG	5 cut(s)	27, 814, 959, 991, 1089
Bse1I	ACTGG	2 cut(s)	108, 609
Bse3DI	GCAATG	1 cut(s)	286
BseDI	CCNNGG	2 cut(s)	162, 300
BseGI	GGATG	2 cut(s)	184, 496
BseLI	CCNNNNNNNGG	5 cut(s)	27, 814, 959, 991, 1089
BseMI	GCAATG	1 cut(s)	286
BseMII	CTCAG	2 cut(s)	426, 670
BseNI	ACTGG	2 cut(s)	108, 609
BseRI	GAGGAG	1 cut(s)	1007
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	3 cut(s)	221, 902, 1080
BshFI	GGCC	2 cut(s)	124, 1082
BsiHKCI	CYCGRG	1 cut(s)	1004
BsiSI	CCGG	1 cut(s)	98
BslFI	GGGAC	1 cut(s)	995
BslI	CCNNNNNNNGG	5 cut(s)	27, 814, 959, 991, 1089
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	1 cut(s)	995
BsnI	GGCC	2 cut(s)	124, 1082
Bso31I	GGTCTC	1 cut(s)	1046
BsoBI	CYCGRG	1 cut(s)	1004
Bsp1286I	GDGCHC	1 cut(s)	352
Bsp143I	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
BspACI	CCGC	2 cut(s)	1038, 1128
BspANI	GGCC	2 cut(s)	124, 1082
BspCNI	CTCAG	2 cut(s)	425, 669
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	2 cut(s)	1011, 1083
BspMAI	CTGCAG	1 cut(s)	1098
BspPI	GGATC	4 cut(s)	410, 488, 533, 933
BspTNI	GGTCTC	1 cut(s)	1046
BsrDI	GCAATG	1 cut(s)	286
BsrI	ACTGG	2 cut(s)	108, 609
BssECI	CCNNGG	2 cut(s)	162, 300
BssMI	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
BssT1I	CCWWGG	2 cut(s)	162, 300
Bst4CI	ACNGT	2 cut(s)	378, 866
Bst6I	CTCTTC	2 cut(s)	903, 1071
BstDEI	CTNAG	3 cut(s)	412, 656, 710
BstF5I	GGATG	2 cut(s)	184, 496
BstH2I	RGCGCY	1 cut(s)	1069
BstHHI	GCGC	1 cut(s)	1068
BstKTI	GATC	6 cut(s)	418, 496, 541, 875, 928, 949
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
BstNSI	RCATGY	2 cut(s)	47, 778
BstSFI	CTRYAG	2 cut(s)	865, 1094
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	3 cut(s)	221, 902, 1080
BstV2I	GAAGAC	2 cut(s)	68, 393
BstX2I	RGATCY	2 cut(s)	415, 946
BstXI	CCANNNNNNTGG	1 cut(s)	115
BstYI	RGATCY	2 cut(s)	415, 946
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	2 cut(s)	124, 1082
BtsCI	GGATG	2 cut(s)	184, 496
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	3 cut(s)	115, 862, 1119
CciI	TCATGA	1 cut(s)	928
CfoI	GCGC	1 cut(s)	1068
Cfr13I	GGNCC	3 cut(s)	123, 1009, 1081
CseI	GACGC	1 cut(s)	387
Csp6I	GTAC	2 cut(s)	1049, 1118
CviAII	CATG	4 cut(s)	44, 460, 775, 929
CviQI	GTAC	2 cut(s)	1049, 1118
DdeI	CTNAG	3 cut(s)	412, 656, 710
DpnI	GATC	6 cut(s)	417, 495, 540, 874, 927, 948
DpnII	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
DrdI	GACNNNNNNGTC	1 cut(s)	222
DseDI	GACNNNNNNGTC	1 cut(s)	222
Eam1104I	CTCTTC	2 cut(s)	903, 1071
EarI	CTCTTC	2 cut(s)	903, 1071
Eco130I	CCWWGG	2 cut(s)	162, 300
Eco31I	GGTCTC	1 cut(s)	1046
Eco32I	GATATC	1 cut(s)	587
Eco47I	GGWCC	1 cut(s)	1009
Eco47III	AGCGCT	1 cut(s)	1067
Eco88I	CYCGRG	1 cut(s)	1004
EcoO109I	RGGNCCY	2 cut(s)	1009, 1081
EcoRI	GAATTC	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	587
EcoT14I	CCWWGG	2 cut(s)	162, 300
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	2 cut(s)	162, 300
FaeI	CATG	4 cut(s)	47, 463, 778, 932
FalI	AAGNNNNNCTT	2 cut(s)	924, 956
FaqI	GGGAC	1 cut(s)	995
FatI	CATG	4 cut(s)	43, 459, 774, 928
FblI	GTMKAC	2 cut(s)	184, 361
Fnu4HI	GCNGC	3 cut(s)	210, 916, 1094
FokI	GGATG	2 cut(s)	191, 503
Fsp4HI	GCNGC	3 cut(s)	210, 916, 1094
FspBI	CTAG	2 cut(s)	213, 791
GlaI	GCGC	1 cut(s)	1067
GluI	GCNGC	3 cut(s)	210, 916, 1094
HaeII	RGCGCY	1 cut(s)	1069
HaeIII	GGCC	2 cut(s)	124, 1082
HapII	CCGG	1 cut(s)	98
HgaI	GACGC	1 cut(s)	387
HhaI	GCGC	1 cut(s)	1068
Hin1II	CATG	4 cut(s)	47, 463, 778, 932
Hin6I	GCGC	1 cut(s)	1066
HinP1I	GCGC	1 cut(s)	1066
HindIII	AAGCTT	3 cut(s)	442, 707, 895
HinfI	GANTC	9 cut(s)	104, 245, 296, 467, 500, 787, 821, 848, 858
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	2 cut(s)	208, 552
Hpy166II	GTNNAC	3 cut(s)	185, 227, 362
Hpy188I	TCNGA	4 cut(s)	415, 659, 673, 946
Hpy188III	TCNNGA	5 cut(s)	372, 497, 855, 929, 1004
Hpy8I	GTNNAC	3 cut(s)	185, 227, 362
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	4 cut(s)	393, 649, 708, 739
HpyCH4III	ACNGT	2 cut(s)	378, 866
HpyCH4V	TGCA	3 cut(s)	284, 340, 1096
HpyF3I	CTNAG	3 cut(s)	412, 656, 710
Hsp92II	CATG	4 cut(s)	47, 463, 778, 932
HspAI	GCGC	1 cut(s)	1066
Kzo9I	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
LmnI	GCTCC	1 cut(s)	1063
Lsp1109I	GCAGC	3 cut(s)	221, 902, 1080
LweI	GCATC	2 cut(s)	90, 611
MaeI	CTAG	2 cut(s)	213, 791
MaeIII	GTNAC	1 cut(s)	980
MalI	GATC	6 cut(s)	417, 495, 540, 874, 927, 948
MboI	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
MfeI	CAATTG	1 cut(s)	831
MflI	RGATCY	2 cut(s)	415, 946
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	7 cut(s)	239, 332, 510, 571, 831, 876, 954
MlyI	GAGTC	3 cut(s)	476, 796, 852
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	8 cut(s)	94, 114, 201, 429, 552, 985, 1000, 1072
Mph1103I	ATGCAT	1 cut(s)	286
MseI	TTAA	2 cut(s)	170, 633
MspI	CCGG	1 cut(s)	98
MunI	CAATTG	1 cut(s)	831
NdeII	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
NlaIII	CATG	4 cut(s)	47, 463, 778, 932
NlaIV	GGNNCC	2 cut(s)	1011, 1083
NmuCI	GTSAC	1 cut(s)	980
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	2 cut(s)	47, 778
PaeR7I	CTCGAG	1 cut(s)	1004
PagI	TCATGA	1 cut(s)	928
PciI	ACATGT	1 cut(s)	774
PfeI	GAWTC	6 cut(s)	104, 245, 296, 500, 821, 848
PkrI	GCNGC	3 cut(s)	211, 917, 1095
PleI	GAGTC	3 cut(s)	475, 795, 852
PpsI	GAGTC	3 cut(s)	475, 795, 852
PpuMI	RGGWCCY	1 cut(s)	1009
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	519
Psp5II	RGGWCCY	1 cut(s)	1009
PspN4I	GGNNCC	2 cut(s)	1011, 1083
PspPI	GGNCC	3 cut(s)	123, 1009, 1081
PspPPI	RGGWCCY	1 cut(s)	1009
PstI	CTGCAG	1 cut(s)	1098
PsuI	RGATCY	2 cut(s)	415, 946
RsaI	GTAC	2 cut(s)	1050, 1119
RsaNI	GTAC	2 cut(s)	1049, 1118
SaqAI	TTAA	2 cut(s)	170, 633
SatI	GCNGC	3 cut(s)	210, 916, 1094
Sau3AI	GATC	6 cut(s)	415, 493, 538, 872, 925, 946
Sau96I	GGNCC	3 cut(s)	123, 1009, 1081
SchI	GAGTC	3 cut(s)	476, 796, 852
SduI	GDGCHC	1 cut(s)	352
SfaNI	GCATC	2 cut(s)	90, 611
SfcI	CTRYAG	2 cut(s)	865, 1094
Sfr274I	CTCGAG	1 cut(s)	1004
SinI	GGWCC	1 cut(s)	1009
SlaI	CTCGAG	1 cut(s)	1004
SmlI	CTYRAG	1 cut(s)	1004
SmoI	CTYRAG	1 cut(s)	1004
Sse9I	AATT	7 cut(s)	239, 332, 510, 571, 831, 876, 954
SsiI	CCGC	2 cut(s)	1038, 1128
SspI	AATATT	1 cut(s)	889
SspMI	CTAG	2 cut(s)	213, 791
StyI	CCWWGG	2 cut(s)	162, 300
TaaI	ACNGT	2 cut(s)	378, 866
TaqI	TCGA	3 cut(s)	87, 93, 1005
TasI	AATT	7 cut(s)	239, 332, 510, 571, 831, 876, 954
TatI	WGTACW	1 cut(s)	1048
TfiI	GAWTC	6 cut(s)	104, 245, 296, 500, 821, 848
Tru1I	TTAA	2 cut(s)	170, 633
Tru9I	TTAA	2 cut(s)	170, 633
TscAI	CASTG	3 cut(s)	115, 869, 1119
TseFI	GTSAC	1 cut(s)	980
TseI	GCWGC	3 cut(s)	209, 915, 1093
Tsp45I	GTSAC	1 cut(s)	980
TspDTI	ATGAA	8 cut(s)	476, 584, 614, 722, 770, 830, 945, 1060
TspGWI	ACGGA	1 cut(s)	493
TspRI	CASTG	3 cut(s)	115, 869, 1119
VpaK11BI	GGWCC	1 cut(s)	1009
XapI	RAATTY	4 cut(s)	239, 332, 510, 571
XceI	RCATGY	2 cut(s)	47, 778
XhoI	CTCGAG	1 cut(s)	1004
XmiI	GTMKAC	2 cut(s)	184, 361
XspI	CTAG	2 cut(s)	213, 791
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.