AT1G60220

protease 1d

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
22208089 .. 22212171
4083 bp
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UTR
Exon/CDS
Intron
AT1G60220.1

Sequence Viewer

Length: 1755 bp
ATGACGAAGAGGAAGAAGGAAGTAATAGATGTCGATTGCTCCGAGAAGAAAGATTTTGTGATTGATTGGTCTTCCGCTATGGATAAGGAAGACGAAGTTCCCGAGCTCGAGATTGTTAATACCACCAAACCTACTCCTCCGCCACCGCCAACGTTTTTCTCCGACGATCAAACCGATTCTCCGAAACTCCTAACCGATCGTGACCTCGACGAGCAGCTAGAGCGTAAAAAAGCGATCCTGACATTAGGTCCGGGCTTACCCGACAAGGGTGAGAAAATTCGACTCAAAATCGCTGATCTCGAAGAGGAGAAGCAGCGTAGAGTTTTAGAAGGCTCGAAAATGGAGGTGGACAGAAGTTCTAAGGTCGTGTCTTCGACTAGCTCAGGTTCAGATGTTTTACCGCAAGGAAATGCAGTTTCAAAAGATACCTCTAGAGGGAATGCAGACTCAAAAGACACCTCTAGACAAGGGAATGCAGATTCAAAAGAAGTCTCACGGTCAACATTTTCTGCGGTTTTCAGTAAACCAAAAACGGATTCTCAGTCAAAGAAAGCCTTTGGTAAAGAACTAGAAGATCTGGGATGTGAAAGGAGGAAACACAAGGCTGGTAGAAAGCCTGTAACAAGGCTGAGCAACGGGTGGCGGTTGTTGCCAGATGTAGGGAAAGCTGAGCACAGTGCAAAGCAGTTTGATTCTGGACTTAAAGAATCAAAAGGGAATAAGAAATCCAAGGAACCTTATGGAAAGAAAAGGCCCATGGAATCTTCGACTTATTCTCTGATTGATGATGATGATGATGATGATGATGATGATGACAACGACACCAGTGGCCATGAAACTCCTAGGGAGTGGTCTTGGGAAAAATCTCCATCACAAAGTTCAAGGCGCCGTAAGAAATCAGAGGACACAGTGATAAATGTGGATGAAGAAGAAGCTCAGCCTTCAACAGTGGCGGAGCAAGCGGCTGAACTGCCTGAAGGCTTACAGGAAGATATATGCTACCCAACAAGGGATGATCCTCACTTTGTTCAAGTTTGTCTTAAAGATCTTGAATGCCTTGCACCTCGAGAATATCTGACATCGCCGGTTATGAATTTCTACATGAGGTTCTTGCAGCAGCAGATATCATCATCGAATCAAATCTCTGCTGATTGTCACTTCTTTAATACCTATTTCTACAAGAAGCTCAGTGACGCTGTTACGTACAAGGGGAATGACAAGGATGCCTTCTTTGTGAGGTTCAGGCGGTGGTGGAAGGGTATTGATCTATTTCGTAAGGCTTATATTTTCATACCAATACATGAAGATCTCCACTGGAGCCTTGTGATAGTTTGCATCCCTGATAAGAAAGATGAATCGGGGTTGACTATACTTCACCTTGATTCTCTAGGACTTCACTCGAGAAAATCAATTGTTGAAAATGTAAAAAGGTTTCTAAAAGACGAATGGAATTATTTGAATCAAGATGACTATTCCTTGGATCTGCCTATCTCAGAAAAAGTATGGAAAAACCTCCCTCGTAGGATCAGCGAAGCTGTTGTTCAGGTTCCGCAGCAGAAAAACGATTTTGATTGTGGTCCGTTTGTGCTCTTCTTCATTAAACGGTTCATTGAAGAGGCGCCTCAAAGGCTGAAAAGGAAAGACCTGGGAATGTTCGACAAGAAGTGGTTTAGACCCGATGAAGCCTCTGCTCTGAGAATCAAAATCCGAAACACGCTCATCGAGCTATTCCGTGTCAGTGACCAGACAGAGTAA

Protein Analysis

584

Amino Acids

67.19

Weight (kDa)

5.76

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 357 - 560 6.2e-51 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 885, 1618
AclI AACGTT 1 cut(s) 152
AclWI GGATC 4 cut(s) 229, 1010, 1488, 1532
AcoI YGGCCR 1 cut(s) 829
AcsI RAATTY 2 cut(s) 276, 1093
AcuI CTGAAG 1 cut(s) 996
AcyI GRCGYC 2 cut(s) 886, 1619
AfaI GTAC 1 cut(s) 1205
AfiI CCNNNNNNNGG 4 cut(s) 266, 435, 659, 1009
AgsI TTSAA 9 cut(s) 420, 483, 882, 945, 1031, 1052, 1418, 1459, 1613
AhdI GACNNNNNGTC 1 cut(s) 246
AjnI CCWGG 1 cut(s) 1644
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AluBI AGCT 8 cut(s) 106, 217, 381, 668, 935, 1186, 1535, 1726
AluI AGCT 8 cut(s) 106, 217, 381, 668, 935, 1186, 1535, 1726
Alw21I GWGCWC 3 cut(s) 108, 675, 1590
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 4 cut(s) 229, 1010, 1488, 1532
Ama87I CYCGRG 4 cut(s) 101, 107, 1065, 1399
AoxI GGCC 2 cut(s) 752, 829
ApeKI GCWGC 5 cut(s) 214, 313, 1114, 1117, 1552
ApoI RAATTY 2 cut(s) 276, 1093
AspA2I CCTAGG 1 cut(s) 842
AspLEI GCGC 2 cut(s) 888, 1621
AspS9I GGNCC 3 cut(s) 248, 753, 1577
AsuC2I CCSGG 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 281, 1367
AvaI CYCGRG 4 cut(s) 101, 107, 1065, 1399
AvaII GGWCC 2 cut(s) 248, 1577
AvrII CCTAGG 1 cut(s) 842
BalI TGGCCA 1 cut(s) 831
BanI GGYRCC 2 cut(s) 885, 1618
BanII GRGCYC 1 cut(s) 108
BbsI GAAGAC 3 cut(s) 63, 96, 363
Bbv12I GWGCWC 3 cut(s) 108, 675, 1590
BbvI GCAGC 5 cut(s) 226, 325, 1126, 1129, 1564
BccI CCATC 1 cut(s) 877
BceAI ACGGC 1 cut(s) 873
BciT130I CCWGG 1 cut(s) 1646
BcnI CCSGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 7 cut(s) 218, 378, 432, 462, 569, 843, 1388
BfoI RGCGCY 2 cut(s) 889, 1622
BglI GCCNNNNNGGC 1 cut(s) 1627
BglII AGATCT 3 cut(s) 574, 1045, 1306
BisI GCNGC 6 cut(s) 215, 314, 963, 1115, 1118, 1553
BlnI CCTAGG 1 cut(s) 842
BlpI GCTNAGC 3 cut(s) 629, 669, 936
BlsI GCNGC 6 cut(s) 216, 315, 964, 1116, 1119, 1554
Bme1390I CCNGG 2 cut(s) 252, 1646
Bme18I GGWCC 2 cut(s) 248, 1577
BmeRI GACNNNNNGTC 1 cut(s) 246
BmeT110I CYCGRG 4 cut(s) 101, 107, 1065, 1399
BmgT120I GGNCC 3 cut(s) 248, 753, 1577
BmiI GGNNCC 5 cut(s) 735, 887, 1319, 1548, 1620
BmrFI CCNGG 2 cut(s) 252, 1646
BmsI GCATC 2 cut(s) 1213, 1344
BpiI GAAGAC 3 cut(s) 63, 96, 363
BpmI CTGGAG 1 cut(s) 1336
Bpu10I CCTNAGC 1 cut(s) 382
Bpu1102I GCTNAGC 3 cut(s) 629, 669, 936
BpuMI CCSGG 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 1203
BsaHI GRCGYC 2 cut(s) 886, 1619
BsaJI CCNNGG 5 cut(s) 729, 756, 842, 1476, 1645
BsaXI ACNNNNNCTCC 2 cut(s) 163, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 266, 435, 659, 1009
Bse118I RCCGGY 1 cut(s) 1084
Bse1I ACTGG 2 cut(s) 825, 1319
BseBI CCWGG 1 cut(s) 1646
BseDI CCNNGG 5 cut(s) 729, 756, 842, 1476, 1645
BseGI GGATG 5 cut(s) 587, 928, 1018, 1228, 1335
BseLI CCNNNNNNNGG 4 cut(s) 266, 435, 659, 1009
BseMII CTCAG 8 cut(s) 396, 554, 620, 660, 950, 1201, 1506, 1685
BseNI ACTGG 2 cut(s) 825, 1319
BseRI GAGGAG 2 cut(s) 126, 320
BseXI GCAGC 5 cut(s) 226, 325, 1126, 1129, 1564
Bsh1285I CGRYCG 1 cut(s) 199
BshFI GGCC 2 cut(s) 754, 831
BshNI GGYRCC 2 cut(s) 885, 1618
BsiEI CGRYCG 1 cut(s) 199
BsiHKAI GWGCWC 3 cut(s) 108, 675, 1590
BsiHKCI CYCGRG 4 cut(s) 101, 107, 1065, 1399
BsiSI CCGG 2 cut(s) 251, 1085
BslI CCNNNNNNNGG 4 cut(s) 266, 435, 659, 1009
BsmAI GTCTC 1 cut(s) 496
BsmI GAATGC 3 cut(s) 445, 478, 1058
BsnI GGCC 2 cut(s) 754, 831
BsoBI CYCGRG 4 cut(s) 101, 107, 1065, 1399
Bsp1286I GDGCHC 3 cut(s) 108, 675, 1590
Bsp1720I GCTNAGC 3 cut(s) 629, 669, 936
Bsp19I CCATGG 1 cut(s) 756
BspANI GGCC 2 cut(s) 754, 831
BspCNI CTCAG 8 cut(s) 395, 553, 621, 661, 949, 1200, 1505, 1686
BspLI GGNNCC 5 cut(s) 735, 887, 1319, 1548, 1620
BspPI GGATC 4 cut(s) 229, 1010, 1488, 1532
BspQI GCTCTTC 1 cut(s) 1595
BspT107I GGYRCC 2 cut(s) 885, 1618
BsrFI RCCGGY 1 cut(s) 1084
BsrI ACTGG 2 cut(s) 825, 1319
BssAI RCCGGY 1 cut(s) 1084
BssECI CCNNGG 5 cut(s) 729, 756, 842, 1476, 1645
BssNI GRCGYC 2 cut(s) 886, 1619
BssT1I CCWWGG 4 cut(s) 729, 756, 842, 1476
Bst2UI CCWGG 1 cut(s) 1646
Bst4CI ACNGT 5 cut(s) 498, 677, 910, 949, 1605
Bst6I CTCTTC 4 cut(s) 2, 297, 1595, 1608
BstACI GRCGYC 2 cut(s) 886, 1619
BstBAI YACGTR 1 cut(s) 1203
BstC8I GCNNGC 1 cut(s) 960
BstDEI CTNAG 9 cut(s) 360, 382, 540, 629, 669, 936, 1187, 1492, 1694
BstDSI CCRYGG 1 cut(s) 756
BstF5I GGATG 5 cut(s) 587, 928, 1018, 1228, 1335
BstH2I RGCGCY 2 cut(s) 889, 1622
BstHHI GCGC 2 cut(s) 888, 1621
BstMAI GTCTC 1 cut(s) 496
BstMCI CGRYCG 1 cut(s) 199
BstMWI GCNNNNNNNGC 5 cut(s) 220, 649, 959, 1627, 1723
BstNI CCWGG 1 cut(s) 1646
BstSCI CCNGG 2 cut(s) 250, 1644
BstSNI TACGTA 1 cut(s) 1203
BstV1I GCAGC 5 cut(s) 226, 325, 1126, 1129, 1564
BstV2I GAAGAC 3 cut(s) 63, 96, 363
BstX2I RGATCY 4 cut(s) 574, 1045, 1306, 1480
BstYI RGATCY 4 cut(s) 574, 1045, 1306, 1480
BsuRI GGCC 2 cut(s) 754, 831
BtgI CCRYGG 1 cut(s) 756
BtgZI GCGATG 1 cut(s) 1065
BtsCI GGATG 5 cut(s) 587, 928, 1018, 1228, 1335
BtsIMutI CAGTG 7 cut(s) 682, 832, 915, 954, 1195, 1312, 1744
Cac8I GCNNGC 1 cut(s) 960
CfoI GCGC 2 cut(s) 888, 1621
Cfr10I RCCGGY 1 cut(s) 1084
Cfr13I GGNCC 3 cut(s) 248, 753, 1577
CseI GACGC 1 cut(s) 1202
Csp6I GTAC 1 cut(s) 1204
CviAII CATG 4 cut(s) 757, 833, 1102, 1301
CviQI GTAC 1 cut(s) 1204
DdeI CTNAG 9 cut(s) 360, 382, 540, 629, 669, 936, 1187, 1492, 1694
DinI GGCGCC 2 cut(s) 887, 1620
DriI GACNNNNNGTC 1 cut(s) 246
EaeI YGGCCR 1 cut(s) 829
Eam1104I CTCTTC 4 cut(s) 2, 297, 1595, 1608
Eam1105I GACNNNNNGTC 1 cut(s) 246
EarI CTCTTC 4 cut(s) 2, 297, 1595, 1608
EciI GGCGGA 2 cut(s) 129, 968
Ecl136II GAGCTC 1 cut(s) 106
Eco105I TACGTA 1 cut(s) 1203
Eco130I CCWWGG 4 cut(s) 729, 756, 842, 1476
Eco24I GRGCYC 1 cut(s) 108
Eco32I GATATC 1 cut(s) 1125
Eco47I GGWCC 2 cut(s) 248, 1577
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 996
Eco88I CYCGRG 4 cut(s) 101, 107, 1065, 1399
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 1644
EcoRV GATATC 1 cut(s) 1125
EcoT14I CCWWGG 4 cut(s) 729, 756, 842, 1476
EcoT38I GRGCYC 1 cut(s) 108
EgeI GGCGCC 2 cut(s) 887, 1620
EheI GGCGCC 2 cut(s) 887, 1620
ErhI CCWWGG 4 cut(s) 729, 756, 842, 1476
FaeI CATG 4 cut(s) 760, 836, 1105, 1304
FalI AAGNNNNNCTT 6 cut(s) 539, 571, 1023, 1055, 1211, 1243
FatI CATG 4 cut(s) 756, 832, 1101, 1300
Fnu4HI GCNGC 6 cut(s) 215, 314, 963, 1115, 1118, 1553
FokI GGATG 5 cut(s) 594, 935, 1025, 1235, 1322
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 6 cut(s) 215, 314, 963, 1115, 1118, 1553
FspBI CTAG 7 cut(s) 218, 378, 432, 462, 569, 843, 1388
GlaI GCGC 2 cut(s) 887, 1620
GluI GCNGC 6 cut(s) 215, 314, 963, 1115, 1118, 1553
GsuI CTGGAG 1 cut(s) 1336
HaeII RGCGCY 2 cut(s) 889, 1622
HaeIII GGCC 2 cut(s) 754, 831
HapII CCGG 2 cut(s) 251, 1085
HgaI GACGC 1 cut(s) 1202
HhaI GCGC 2 cut(s) 888, 1621
Hin1I GRCGYC 2 cut(s) 886, 1619
Hin1II CATG 4 cut(s) 760, 836, 1105, 1304
Hin6I GCGC 2 cut(s) 886, 1619
HinP1I GCGC 2 cut(s) 886, 1619
HincII GTYRAC 2 cut(s) 501, 1365
HindII GTYRAC 2 cut(s) 501, 1365
HpaII CCGG 2 cut(s) 251, 1085
HphI GGTGA 2 cut(s) 281, 1367
Hpy166II GTNNAC 4 cut(s) 349, 501, 524, 1365
Hpy8I GTNNAC 4 cut(s) 349, 501, 524, 1365
Hpy99I CGWCG 2 cut(s) 167, 212
HpyAV CCTTC 6 cut(s) 10, 323, 951, 971, 1237, 1249
HpyCH4III ACNGT 5 cut(s) 498, 677, 910, 949, 1605
HpyCH4IV ACGT 2 cut(s) 152, 1202
HpyCH4V TGCA 7 cut(s) 413, 443, 476, 680, 1061, 1114, 1335
HpyF10VI GCNNNNNNNGC 5 cut(s) 220, 649, 959, 1627, 1723
HpyF3I CTNAG 9 cut(s) 360, 382, 540, 629, 669, 936, 1187, 1492, 1694
HpySE526I ACGT 2 cut(s) 152, 1202
Hsp92I GRCGYC 2 cut(s) 886, 1619
Hsp92II CATG 4 cut(s) 760, 836, 1105, 1304
HspAI GCGC 2 cut(s) 886, 1619
KasI GGCGCC 2 cut(s) 885, 1618
LguI GCTCTTC 1 cut(s) 1595
LmnI GCTCC 3 cut(s) 44, 955, 1317
Lsp1109I GCAGC 5 cut(s) 226, 325, 1126, 1129, 1564
LweI GCATC 2 cut(s) 1213, 1344
MaeI CTAG 7 cut(s) 218, 378, 432, 462, 569, 843, 1388
MaeII ACGT 2 cut(s) 152, 1202
MaeIII GTNAC 6 cut(s) 200, 619, 1154, 1190, 1198, 1739
MfeI CAATTG 1 cut(s) 1410
MflI RGATCY 4 cut(s) 574, 1045, 1306, 1480
MhlI GDGCHC 3 cut(s) 108, 675, 1590
MlsI TGGCCA 1 cut(s) 831
MluCI AATT 4 cut(s) 276, 1093, 1410, 1450
MluNI TGGCCA 1 cut(s) 831
Mly113I GGCGCC 2 cut(s) 886, 1619
MlyI GAGTC 2 cut(s) 276, 440
MmeI TCCRAC 1 cut(s) 186
Mox20I TGGCCA 1 cut(s) 831
MscI TGGCCA 1 cut(s) 831
MseI TTAA 5 cut(s) 117, 702, 1041, 1164, 1599
Msp20I TGGCCA 1 cut(s) 831
MspI CCGG 2 cut(s) 251, 1085
MspR9I CCNGG 2 cut(s) 252, 1646
MunI CAATTG 1 cut(s) 1410
Mva1269I GAATGC 3 cut(s) 445, 478, 1058
MvaI CCWGG 1 cut(s) 1646
MwoI GCNNNNNNNGC 5 cut(s) 220, 649, 959, 1627, 1723
NarI GGCGCC 2 cut(s) 886, 1619
NciI CCSGG 1 cut(s) 252
NcoI CCATGG 1 cut(s) 756
NlaIII CATG 4 cut(s) 760, 836, 1105, 1304
NlaIV GGNNCC 5 cut(s) 735, 887, 1319, 1548, 1620
NmuCI GTSAC 4 cut(s) 200, 1154, 1190, 1739
PaeR7I CTCGAG 3 cut(s) 107, 1065, 1399
PciSI GCTCTTC 1 cut(s) 1595
PcsI WCGNNNNNNNCGW 4 cut(s) 39, 99, 171, 297
PctI GAATGC 3 cut(s) 445, 478, 1058
PkrI GCNGC 6 cut(s) 216, 315, 964, 1116, 1119, 1554
Ple19I CGATCG 1 cut(s) 199
PleI GAGTC 2 cut(s) 276, 440
PluTI GGCGCC 2 cut(s) 889, 1622
PpsI GAGTC 2 cut(s) 276, 440
Ppu21I YACGTR 1 cut(s) 1203
Psp124BI GAGCTC 1 cut(s) 108
Psp1406I AACGTT 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 1644
PspGI CCWGG 1 cut(s) 1644
PspN4I GGNNCC 5 cut(s) 735, 887, 1319, 1548, 1620
PspPI GGNCC 3 cut(s) 248, 753, 1577
PsuI RGATCY 4 cut(s) 574, 1045, 1306, 1480
PvuI CGATCG 1 cut(s) 199
RsaI GTAC 1 cut(s) 1205
RsaNI GTAC 1 cut(s) 1204
SacI GAGCTC 1 cut(s) 108
SapI GCTCTTC 1 cut(s) 1595
SaqAI TTAA 5 cut(s) 117, 702, 1041, 1164, 1599
SatI GCNGC 6 cut(s) 215, 314, 963, 1115, 1118, 1553
Sau96I GGNCC 3 cut(s) 248, 753, 1577
SchI GAGTC 2 cut(s) 276, 440
ScrFI CCNGG 2 cut(s) 252, 1646
SduI GDGCHC 3 cut(s) 108, 675, 1590
SfaNI GCATC 2 cut(s) 1213, 1344
SfoI GGCGCC 2 cut(s) 887, 1620
Sfr274I CTCGAG 3 cut(s) 107, 1065, 1399
SinI GGWCC 2 cut(s) 248, 1577
SlaI CTCGAG 3 cut(s) 107, 1065, 1399
SmlI CTYRAG 3 cut(s) 107, 1065, 1399
SmoI CTYRAG 3 cut(s) 107, 1065, 1399
SnaBI TACGTA 1 cut(s) 1203
Sse9I AATT 4 cut(s) 276, 1093, 1410, 1450
SspDI GGCGCC 2 cut(s) 885, 1618
SspMI CTAG 7 cut(s) 218, 378, 432, 462, 569, 843, 1388
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 250, 1644
StyI CCWWGG 4 cut(s) 729, 756, 842, 1476
TaaI ACNGT 5 cut(s) 498, 677, 910, 949, 1605
TaiI ACGT 2 cut(s) 155, 1205
TasI AATT 4 cut(s) 276, 1093, 1410, 1450
TauI GCSGC 1 cut(s) 965
Tru1I TTAA 5 cut(s) 117, 702, 1041, 1164, 1599
Tru9I TTAA 5 cut(s) 117, 702, 1041, 1164, 1599
TscAI CASTG 7 cut(s) 682, 832, 915, 954, 1195, 1319, 1744
TseFI GTSAC 4 cut(s) 200, 1154, 1190, 1739
TseI GCWGC 5 cut(s) 214, 313, 1114, 1117, 1552
Tsp45I GTSAC 4 cut(s) 200, 1154, 1190, 1739
TspDTI ATGAA 9 cut(s) 849, 939, 1106, 1279, 1317, 1368, 1585, 1597, 1695
TspGWI ACGGA 3 cut(s) 548, 1569, 1721
TspRI CASTG 7 cut(s) 682, 832, 915, 954, 1195, 1319, 1744
VpaK11BI GGWCC 2 cut(s) 248, 1577
XapI RAATTY 2 cut(s) 276, 1093
XbaI TCTAGA 2 cut(s) 431, 461
XhoI CTCGAG 3 cut(s) 107, 1065, 1399
XmaJI CCTAGG 1 cut(s) 842
XspI CTAG 7 cut(s) 218, 378, 432, 462, 569, 843, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.