Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004755

Physical Location & Seq

Genomic Coordinates Forward (+)

4482138 .. 4484858

Gene Structure 2721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G005410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGGAAAGCTTCTCTGCCAAAACCATGAAAGAGTCTATCTACTATCCATCAAGGGATGATCCAGATTCCGTTGAAATTTGTTATAAACACATCAAGTGCCTTGATCCTCAAACACCCTTGACATCACCTGTTATGAATTTTTACATACGATATCTACATCAACAAGCATCTTCCAGTAGGGCAACATTTCATTTCTTTAATACCTTCTTTTACAACAAGCTCAGAAATGTTGTATCAGAACAGAAGAACAACAAGAAAAACCATTTTGACAAGCTTAGAAGGTGGTGGAAAGGTGTTCATTTATTACAGAAGGCATACATACTTATTCCTGTAAATGACATGTTTCATTGGAGTCTAGTCATTATCTGTATCCCTGACAAGGAAGAATCACAACCAATTGTTCTTCATTTAGATTCGTTAGGACTCCACTGTAGCAGATCAATTTTTCAAAATATTACAAGCTTTTTGAAAGAAGAGTGCTGCTATTTGGATCATGAAGCTGGTCTTTCAGATCTTCCAATTTCAGGCTATTGCAAATACCTTTGTGACCATATTGAGGAGAAAGTTCTCGAGGTCCCACAACAGAAAAATCACTATGATTGCGGTCTCTTTGTACTTCTCTTTATGGAGCGCTTCATTGAAGAGGCCCCTGAAAGGCTGCAGAAGAAAGATTTAGCAGTGTTTGGTCGGCATTGGTTCAAACCTGAAGAGGCTTCGATTCTGAGAAGTAAAATCCGGAAGTTACTCATGGAGAAATTTCGAAATGAATCTTCTAAAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

260

Amino Acids

30.91

Weight (kDa)

8.47

Isoelectric Point (pI)

68.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	40 - 236	2.5e-36	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10570 AT1G10570 AT1G10570 AT1G60220
fragaria_vesca	FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560
malus_domestica	MD13G1091500.v1.1
prunus_persica	Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1
pyrus_communis	pycom13g07950
rosa_chinensis	RchiOBHm_Chr3g0455541 RchiOBHm_Chr4g0443941
rosa_laevigata	RLG00000005875
rosa_multiflora	Rmu_sc0011390.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384480
rosa_rugosa	Rorug03G0008300 Rorug04G0348400 Rorug04G0348500
rosa_samantha	Rh4AG409000 Rh4BG420100 Rh4CG434100 Rh4DG415100
rosa_wichuraiana	Rw3G005410 Rw4G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	84
AccIII	TCCGGA	1 cut(s)	735
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	3 cut(s)	53, 98, 498
AcsI	RAATTY	3 cut(s)	75, 136, 755
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	1 cut(s)	615
AfeI	AGCGCT	1 cut(s)	632
AfiI	CCNNNNNNNGG	4 cut(s)	379, 524, 556, 654
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	5 cut(s)	74, 449, 469, 641, 700
AluBI	AGCT	5 cut(s)	9, 220, 274, 462, 500
AluI	AGCT	5 cut(s)	9, 220, 274, 462, 500
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	3 cut(s)	53, 98, 498
Ama87I	CYCGRG	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	735
Aor51HI	AGCGCT	1 cut(s)	632
AoxI	GGCC	1 cut(s)	645
ApeKI	GCWGC	2 cut(s)	480, 658
ApoI	RAATTY	3 cut(s)	75, 136, 755
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	2 cut(s)	574, 646
AsuHPI	GGTGA	1 cut(s)	117
AsuII	TTCGAA	1 cut(s)	760
AvaI	CYCGRG	1 cut(s)	569
AvaII	GGWCC	1 cut(s)	574
BbvI	GCAGC	2 cut(s)	467, 645
BccI	CCATC	1 cut(s)	55
BciVI	GTATCC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	611
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	2 cut(s)	430, 659
BfoI	RGCGCY	1 cut(s)	634
BfuI	GTATCC	1 cut(s)	380
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	2 cut(s)	481, 659
BlsI	GCNGC	2 cut(s)	482, 660
Bme18I	GGWCC	1 cut(s)	574
BmeT110I	CYCGRG	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	574, 646
BmiI	GGNNCC	2 cut(s)	576, 648
BmsI	GCATC	1 cut(s)	176
Bpu14I	TTCGAA	1 cut(s)	760
BsaI	GGTCTC	1 cut(s)	611
BsaWI	WCCGGW	1 cut(s)	735
Bsc4I	CCNNNNNNNGG	4 cut(s)	379, 524, 556, 654
Bse1I	ACTGG	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	735
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	4 cut(s)	379, 524, 556, 654
BseMII	CTCAG	2 cut(s)	235, 713
BseNI	ACTGG	1 cut(s)	174
BseRI	GAGGAG	1 cut(s)	572
BseXI	GCAGC	2 cut(s)	467, 645
BshFI	GGCC	1 cut(s)	647
BsiHKCI	CYCGRG	1 cut(s)	569
BsiSI	CCGG	1 cut(s)	736
BslFI	GGGAC	1 cut(s)	560
BslI	CCNNNNNNNGG	4 cut(s)	379, 524, 556, 654
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	560
BsnI	GGCC	1 cut(s)	647
Bso31I	GGTCTC	1 cut(s)	611
BsoBI	CYCGRG	1 cut(s)	569
Bsp119I	TTCGAA	1 cut(s)	760
Bsp13I	TCCGGA	1 cut(s)	735
Bsp143I	GATC	5 cut(s)	58, 103, 437, 490, 511
BspACI	CCGC	1 cut(s)	603
BspANI	GGCC	1 cut(s)	647
BspCNI	CTCAG	2 cut(s)	234, 714
BspEI	TCCGGA	1 cut(s)	735
BspHI	TCATGA	1 cut(s)	493
BspLI	GGNNCC	2 cut(s)	576, 648
BspMAI	CTGCAG	1 cut(s)	663
BspPI	GGATC	3 cut(s)	53, 98, 498
BspT104I	TTCGAA	1 cut(s)	760
BspTNI	GGTCTC	1 cut(s)	611
BsrI	ACTGG	1 cut(s)	174
BssMI	GATC	5 cut(s)	58, 103, 437, 490, 511
Bst4CI	ACNGT	1 cut(s)	431
Bst6I	CTCTTC	3 cut(s)	468, 636, 702
BstBI	TTCGAA	1 cut(s)	760
BstDEI	CTNAG	3 cut(s)	221, 275, 722
BstF5I	GGATG	1 cut(s)	61
BstH2I	RGCGCY	1 cut(s)	634
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	5 cut(s)	61, 106, 440, 493, 514
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	5 cut(s)	58, 103, 437, 490, 511
BstNSI	RCATGY	1 cut(s)	343
BstSFI	CTRYAG	2 cut(s)	430, 659
BstV1I	GCAGC	2 cut(s)	467, 645
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	380
BsuRI	GGCC	1 cut(s)	647
BtsCI	GGATG	1 cut(s)	61
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	2 cut(s)	427, 684
CciI	TCATGA	1 cut(s)	493
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	2 cut(s)	574, 646
Csp6I	GTAC	1 cut(s)	614
CviAII	CATG	4 cut(s)	25, 340, 494, 748
CviJI	RGCY	9 cut(s)	9, 220, 274, 462, 500, 528, 647, 658, 713
CviKI_1	RGCY	9 cut(s)	9, 220, 274, 462, 500, 528, 647, 658, 713
CviQI	GTAC	1 cut(s)	614
DdeI	CTNAG	3 cut(s)	221, 275, 722
DpnI	GATC	5 cut(s)	60, 105, 439, 492, 513
DpnII	GATC	5 cut(s)	58, 103, 437, 490, 511
Eam1104I	CTCTTC	3 cut(s)	468, 636, 702
EarI	CTCTTC	3 cut(s)	468, 636, 702
Eco31I	GGTCTC	1 cut(s)	611
Eco32I	GATATC	1 cut(s)	152
Eco47I	GGWCC	1 cut(s)	574
Eco47III	AGCGCT	1 cut(s)	632
Eco57I	CTGAAG	1 cut(s)	726
Eco88I	CYCGRG	1 cut(s)	569
EcoO109I	RGGNCCY	2 cut(s)	574, 646
EcoRV	GATATC	1 cut(s)	152
FaeI	CATG	4 cut(s)	28, 343, 497, 751
FalI	AAGNNNNNCTT	2 cut(s)	489, 521
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	4 cut(s)	24, 339, 493, 747
Fnu4HI	GCNGC	2 cut(s)	481, 659
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	2 cut(s)	481, 659
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	2 cut(s)	481, 659
HaeII	RGCGCY	1 cut(s)	634
HaeIII	GGCC	1 cut(s)	647
HapII	CCGG	1 cut(s)	736
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	4 cut(s)	28, 343, 497, 751
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HindIII	AAGCTT	3 cut(s)	7, 272, 460
HinfI	GANTC	8 cut(s)	32, 65, 352, 386, 413, 423, 718, 767
HpaII	CCGG	1 cut(s)	736
HphI	GGTGA	1 cut(s)	117
Hpy188I	TCNGA	4 cut(s)	224, 238, 511, 723
Hpy188III	TCNNGA	4 cut(s)	62, 494, 569, 736
HpyAV	CCTTC	3 cut(s)	214, 273, 304
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4V	TGCA	2 cut(s)	534, 661
HpyF3I	CTNAG	3 cut(s)	221, 275, 722
Hsp92II	CATG	4 cut(s)	28, 343, 497, 751
HspAI	GCGC	1 cut(s)	631
Kpn2I	TCCGGA	1 cut(s)	735
Kzo9I	GATC	5 cut(s)	58, 103, 437, 490, 511
LmnI	GCTCC	1 cut(s)	628
Lsp1109I	GCAGC	2 cut(s)	467, 645
LweI	GCATC	1 cut(s)	176
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	2 cut(s)	545, 741
MalI	GATC	5 cut(s)	60, 105, 439, 492, 513
MboI	GATC	5 cut(s)	58, 103, 437, 490, 511
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	511
MluCI	AATT	6 cut(s)	75, 136, 396, 441, 519, 755
MlyI	GAGTC	3 cut(s)	41, 361, 417
MnlI	CCTC	5 cut(s)	117, 550, 565, 637, 703
MroI	TCCGGA	1 cut(s)	735
MseI	TTAA	1 cut(s)	198
MspI	CCGG	1 cut(s)	736
MunI	CAATTG	1 cut(s)	396
NdeII	GATC	5 cut(s)	58, 103, 437, 490, 511
NlaIII	CATG	4 cut(s)	28, 343, 497, 751
NlaIV	GGNNCC	2 cut(s)	576, 648
NmuCI	GTSAC	1 cut(s)	545
NspI	RCATGY	1 cut(s)	343
NspV	TTCGAA	1 cut(s)	760
PaeR7I	CTCGAG	1 cut(s)	569
PagI	TCATGA	1 cut(s)	493
PciI	ACATGT	1 cut(s)	339
PfeI	GAWTC	5 cut(s)	65, 386, 413, 718, 767
PkrI	GCNGC	2 cut(s)	482, 660
PleI	GAGTC	3 cut(s)	40, 360, 417
PpsI	GAGTC	3 cut(s)	40, 360, 417
PpuMI	RGGWCCY	1 cut(s)	574
PscI	ACATGT	1 cut(s)	339
PsiI	TTATAA	1 cut(s)	84
Psp5II	RGGWCCY	1 cut(s)	574
PspN4I	GGNNCC	2 cut(s)	576, 648
PspPI	GGNCC	2 cut(s)	574, 646
PspPPI	RGGWCCY	1 cut(s)	574
PstI	CTGCAG	1 cut(s)	663
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	1 cut(s)	615
RsaNI	GTAC	1 cut(s)	614
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	481, 659
Sau3AI	GATC	5 cut(s)	58, 103, 437, 490, 511
Sau96I	GGNCC	2 cut(s)	574, 646
SchI	GAGTC	3 cut(s)	41, 361, 417
SfaNI	GCATC	1 cut(s)	176
SfcI	CTRYAG	2 cut(s)	430, 659
Sfr274I	CTCGAG	1 cut(s)	569
SfuI	TTCGAA	1 cut(s)	760
SinI	GGWCC	1 cut(s)	574
SlaI	CTCGAG	1 cut(s)	569
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
Sse9I	AATT	6 cut(s)	75, 136, 396, 441, 519, 755
SsiI	CCGC	1 cut(s)	603
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	1 cut(s)	431
TaqI	TCGA	3 cut(s)	570, 716, 760
TasI	AATT	6 cut(s)	75, 136, 396, 441, 519, 755
TatI	WGTACW	1 cut(s)	613
TfiI	GAWTC	5 cut(s)	65, 386, 413, 718, 767
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	2 cut(s)	434, 684
TseFI	GTSAC	1 cut(s)	545
TseI	GCWGC	2 cut(s)	480, 658
Tsp45I	GTSAC	1 cut(s)	545
TspDTI	ATGAA	9 cut(s)	41, 149, 179, 287, 335, 395, 510, 625, 780
TspGWI	ACGGA	1 cut(s)	58
TspRI	CASTG	2 cut(s)	434, 684
VpaK11BI	GGWCC	1 cut(s)	574
XapI	RAATTY	3 cut(s)	75, 136, 755
XceI	RCATGY	1 cut(s)	343
XhoI	CTCGAG	1 cut(s)	569
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.