pycom13g07950

Ubiquitin-like-specific protease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
5270794 .. 5275272
4479 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g07950.11

Sequence Viewer

Length: 1716 bp
ATGGAGGAAGAGACGGGTGGGAAGAGGAGGATCGATGTCAGCAAGGTGCTGGATTGTCTCGACGACAGCGGCGACCCGCTGGAGAGGGTGGTTTTGCCGGAGTCAAAGCGGAAAGCTACGGCCGCGGAGGAGCAGCCGCCGAAGCAGTCCGGAATGGGGGGCGGTGATCAGCAGCGGGATGATTTCTTCTATGTCATAGCCGATCACGAGCTAGAGGAGAAGATTAAGCGGCAGAAGAGTAACATTGAGAAACTGAGCCGCAGCTTGCCGGACAAAGGCGAAAAGCTCCGGGTGGCTCTTATGCAGTTGGAGGACGAAAAGGAGCGGAGGAGATGCAGTCGGCTTGAAAAGAACACCAGTAGGTGGGAGGAGATCGCACAAGCCACGAGCTGTAAAAACAGAAACATGGATGATTCTACTGGCTTCAAAAATGAGGCTACAGCACCTCTGGCAAAGCCAAAGTCTGAATTTGCTTGCCATTTTGAACAAAAGATGGAAGAAAAGTCTGATTCTAGGACAGCCAGTGAAGCTCAAACAGAATCATCTCTTCTTCCATGCAACCGGCAGAGCATGAAAAGCAATGGAGAGTTATTGCAAAAAGGAGGACGGAAAGGTCGATCTTCATCAAGATACGTACCTCGTCAATGCTCTAGCAGTTTTAATCATAGACGAGAAAAATGTTCTCTTTCAAATGGTGGTCATAAAGGCGGGGCTTCTTTCCCTTGTTCACTTCGCCACGTTTCAGAAGACTTGTCTAGTTGTGGCAGAAGCTGGAATGACGCTTCTCAAATAAATGGTTCGAGGCATCAAAGGGGTCAGACCGTTGTAGAAATTCTGGATGAGGAGGATGCTGAACCTGCGGACACAGCAGAGCAAGAAGAAGAACTTCCCGAGGGCATTAACGAGGTTAAGATCTACTACCCATCAAGAAATGATCCAAAATCTGTAGAAATCTGTTATGCGGACATTGGGTGCCTTGATCCTGAAGGCTACTTGACATCAACTATCATGAACTTCTACATTCGATATCTACAACAACAAACATCCCCAACAGACAGAGCGTTACGCAACTTTCATTTCTTTAATACATTTTTTTATGAGAAACTCAAGGAGGATGTAGCATATAAGGGGGACGACAAGGATAAACGTTTTGGCAAGTTTAGGAGATGGTGGAAGGGTGTTAATATATTTGAGAAGGCATATGTACTTATTCCTATAAATGAAGATAAACATTGGAGTCTAGTGATTATCTGCATCCCTGACAAGGAAGAAGAATCAGGACCCATTGTACTTCATTTAGATTCTTTATCCGGAGTCCATTCTCCTAGATCAGTTTTTCAAAATATTAAAAGCTATCTGAGAGCAGAATGGAATTATTTGGGTCCAGAAGTTGCCGTTTCAGATCTTCCTATTTCCGACAGTATATGGAAGCAACTTCCCCAAAAAATTGAAGAGAAAAAACTTGCGGTCCCCCAACAGCGAAATGAATATGATTGTGGTCTATTTGTCCTTTTCTTCATGGAGCGCTTCATCGAAGAGGCCCCTGAAAGGCTGAAAAGGAAAGATTTGTCAATGTTTGGCAGGCGGTGGTTCAAACCTGAAGCAGCTTCAAGTTTGAGAATGAAAATCCGTAAGGTACTCAGGCAAGAATTTCGAGATGCTCTTGTTAATCTCTCAAAAGAATCTGCTCCAGCGGTTGGTGCTTCTGAAGAATGA

Protein Analysis

572

Amino Acids

65.54

Weight (kDa)

6.31

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 612
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 972
AccB7I CCANNNNNTGG 2 cut(s) 363, 1697
AccBSI CCGCTC 1 cut(s) 325
AccII CGCG 1 cut(s) 125
AccIII TCCGGA 2 cut(s) 149, 1310
AclI AACGTT 1 cut(s) 1147
AclWI GGATC 3 cut(s) 38, 929, 974
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 3 cut(s) 467, 831, 1649
AcuI CTGAAG 2 cut(s) 1005, 1620
AfaI GTAC 4 cut(s) 636, 1206, 1290, 1638
AfeI AGCGCT 1 cut(s) 1526
AfiI CCNNNNNNNGG 6 cut(s) 156, 275, 363, 1264, 1548, 1697
AgsI TTSAA 8 cut(s) 347, 427, 485, 690, 1340, 1451, 1594, 1611
AluBI AGCT 9 cut(s) 116, 211, 264, 286, 390, 530, 771, 1353, 1607
AluI AGCT 9 cut(s) 116, 211, 264, 286, 390, 530, 771, 1353, 1607
Alw26I GTCTC 2 cut(s) 5, 62
AlwI GGATC 3 cut(s) 38, 929, 974
AlwNI CAGNNNCTG 1 cut(s) 771
Ama87I CYCGRG 1 cut(s) 890
Aor13HI TCCGGA 2 cut(s) 149, 1310
Aor51HI AGCGCT 1 cut(s) 1526
AoxI GGCC 2 cut(s) 120, 1539
ApeKI GCWGC 4 cut(s) 133, 172, 261, 1604
ApoI RAATTY 3 cut(s) 467, 831, 1649
ArsI GACNNNNNNTTYG 2 cut(s) 446, 478
Asp700I GAANNNNTTC 1 cut(s) 885
AspLEI GCGC 1 cut(s) 1527
AspS9I GGNCC 4 cut(s) 1280, 1382, 1468, 1540
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 1 cut(s) 176
AvaI CYCGRG 1 cut(s) 890
AvaII GGWCC 3 cut(s) 1280, 1382, 1468
BanI GGYRCC 1 cut(s) 972
BauI CACGAG 2 cut(s) 206, 385
BbsI GAAGAC 1 cut(s) 753
BbvI GCAGC 4 cut(s) 145, 184, 273, 1616
BccI CCATC 3 cut(s) 487, 931, 1161
BceAI ACGGC 2 cut(s) 135, 1379
BcgI CGANNNNNNTGC 2 cut(s) 1634, 1668
BclI TGATCA 1 cut(s) 166
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 5, 62
BfaI CTAG 6 cut(s) 212, 513, 651, 756, 1241, 1326
BfmI CTRYAG 2 cut(s) 438, 945
BfoI RGCGCY 1 cut(s) 1528
BfuAI ACCTGC 1 cut(s) 865
BglII AGATCT 2 cut(s) 912, 1402
BisI GCNGC 9 cut(s) 70, 123, 134, 137, 173, 230, 259, 262, 1605
BlsI GCNGC 9 cut(s) 71, 124, 135, 138, 174, 231, 260, 263, 1606
Bme1390I CCNGG 1 cut(s) 290
Bme18I GGWCC 3 cut(s) 1280, 1382, 1468
BmeT110I CYCGRG 1 cut(s) 890
BmgT120I GGNCC 4 cut(s) 1280, 1382, 1468, 1540
BmiI GGNNCC 5 cut(s) 974, 1282, 1383, 1470, 1542
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 5 cut(s) 323, 814, 838, 1263, 1648
BpiI GAAGAC 1 cut(s) 753
BpmI CTGGAG 2 cut(s) 101, 1674
BpuEI CTTGAG 1 cut(s) 1091
BpuMI CCSGG 1 cut(s) 290
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 634
BsaBI GATNNNNATC 1 cut(s) 622
BsaJI CCNNGG 2 cut(s) 123, 891
BsaWI WCCGGW 2 cut(s) 149, 1310
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bsc4I CCNNNNNNNGG 6 cut(s) 156, 275, 363, 1264, 1548, 1697
Bse118I RCCGGY 1 cut(s) 561
Bse1I ACTGG 3 cut(s) 357, 424, 522
Bse3DI GCAATG 1 cut(s) 586
Bse8I GATNNNNATC 1 cut(s) 622
BseAI TCCGGA 2 cut(s) 149, 1310
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 2 cut(s) 123, 891
BseGI GGATG 7 cut(s) 184, 415, 844, 853, 1043, 1120, 1254
BseJI GATNNNNATC 1 cut(s) 622
BseLI CCNNNNNNNGG 6 cut(s) 156, 275, 363, 1264, 1548, 1697
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 3 cut(s) 245, 1349, 1654
BseNI ACTGG 3 cut(s) 357, 424, 522
BseRI GAGGAG 6 cut(s) 40, 143, 230, 343, 383, 857
BseX3I CGGCCG 1 cut(s) 120
BseXI GCAGC 4 cut(s) 145, 184, 273, 1616
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 122, 1541
BshNI GGYRCC 1 cut(s) 972
BshVI ATCGAT 1 cut(s) 33
BsiEI CGRYCG 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 890
BsiSI CCGG 6 cut(s) 98, 150, 269, 289, 562, 1311
BslFI GGGAC 2 cut(s) 1145, 1454
BslI CCNNNNNNNGG 6 cut(s) 156, 275, 363, 1264, 1548, 1697
BsmAI GTCTC 2 cut(s) 5, 62
BsmBI CGTCTC 1 cut(s) 5
BsmFI GGGAC 2 cut(s) 1145, 1454
BsnI GGCC 2 cut(s) 122, 1541
BsoBI CYCGRG 1 cut(s) 890
Bsp13I TCCGGA 2 cut(s) 149, 1310
BspANI GGCC 2 cut(s) 122, 1541
BspCNI CTCAG 3 cut(s) 246, 1350, 1653
BspDI ATCGAT 1 cut(s) 33
BspEI TCCGGA 2 cut(s) 149, 1310
BspFNI CGCG 1 cut(s) 125
BspHI TCATGA 1 cut(s) 1008
BspLI GGNNCC 5 cut(s) 974, 1282, 1383, 1470, 1542
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 3 cut(s) 38, 929, 974
BspT107I GGYRCC 1 cut(s) 972
BsrBI CCGCTC 1 cut(s) 325
BsrDI GCAATG 1 cut(s) 586
BsrFI RCCGGY 1 cut(s) 561
BsrI ACTGG 3 cut(s) 357, 424, 522
BssAI RCCGGY 1 cut(s) 561
BssECI CCNNGG 2 cut(s) 123, 891
BssSI CACGAG 2 cut(s) 206, 385
Bst2BI CACGAG 2 cut(s) 206, 385
Bst4CI ACNGT 2 cut(s) 823, 1421
Bst6I CTCTTC 6 cut(s) 3, 17, 230, 552, 1446, 1530
BstBAI YACGTR 1 cut(s) 634
BstC8I GCNNGC 3 cut(s) 266, 475, 1583
BstDEI CTNAG 3 cut(s) 254, 1358, 1640
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 7 cut(s) 184, 415, 844, 853, 1043, 1120, 1254
BstFNI CGCG 1 cut(s) 125
BstH2I RGCGCY 1 cut(s) 1528
BstHHI GCGC 1 cut(s) 1527
BstMAI GTCTC 2 cut(s) 5, 62
BstMCI CGRYCG 1 cut(s) 123
BstMWI GCNNNNNNNGC 8 cut(s) 122, 142, 449, 527, 576, 857, 866, 1700
BstSCI CCNGG 1 cut(s) 288
BstSFI CTRYAG 2 cut(s) 438, 945
BstSNI TACGTA 1 cut(s) 634
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 4 cut(s) 145, 184, 273, 1616
BstV2I GAAGAC 1 cut(s) 753
BstX2I RGATCY 2 cut(s) 912, 1402
BstYI RGATCY 2 cut(s) 912, 1402
BstZI CGGCCG 1 cut(s) 120
Bsu15I ATCGAT 1 cut(s) 33
BsuRI GGCC 2 cut(s) 122, 1541
BsuTUI ATCGAT 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 123
BtsCI GGATG 7 cut(s) 184, 415, 844, 853, 1043, 1120, 1254
BtsIMutI CAGTG 1 cut(s) 529
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 3 cut(s) 266, 475, 1583
CaiI CAGNNNCTG 1 cut(s) 771
CciI TCATGA 1 cut(s) 1008
CfoI GCGC 1 cut(s) 1527
Cfr10I RCCGGY 1 cut(s) 561
Cfr13I GGNCC 4 cut(s) 1280, 1382, 1468, 1540
Cfr42I CCGCGG 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 788
Csp6I GTAC 4 cut(s) 635, 1205, 1289, 1637
CviAII CATG 5 cut(s) 406, 555, 571, 1009, 1519
CviQI GTAC 4 cut(s) 635, 1205, 1289, 1637
DdeI CTNAG 3 cut(s) 254, 1358, 1640
DrdI GACNNNNNNGTC 1 cut(s) 612
DseDI GACNNNNNNGTC 1 cut(s) 612
EaeI YGGCCR 1 cut(s) 120
EagI CGGCCG 1 cut(s) 120
Eam1104I CTCTTC 6 cut(s) 3, 17, 230, 552, 1446, 1530
EarI CTCTTC 6 cut(s) 3, 17, 230, 552, 1446, 1530
EclXI CGGCCG 1 cut(s) 120
Eco105I TACGTA 1 cut(s) 634
Eco32I GATATC 1 cut(s) 1028
Eco47I GGWCC 3 cut(s) 1280, 1382, 1468
Eco47III AGCGCT 1 cut(s) 1526
Eco52I CGGCCG 1 cut(s) 120
Eco57I CTGAAG 2 cut(s) 1005, 1620
Eco88I CYCGRG 1 cut(s) 890
EcoO109I RGGNCCY 2 cut(s) 1280, 1540
EcoRV GATATC 1 cut(s) 1028
Esp3I CGTCTC 1 cut(s) 5
FaeI CATG 5 cut(s) 409, 558, 574, 1012, 1522
FalI AAGNNNNNCTT 2 cut(s) 870, 902
FaqI GGGAC 2 cut(s) 1145, 1454
FatI CATG 5 cut(s) 405, 554, 570, 1008, 1518
FauI CCCGC 3 cut(s) 84, 168, 701
FauNDI CATATG 1 cut(s) 1201
FbaI TGATCA 1 cut(s) 166
Fnu4HI GCNGC 9 cut(s) 70, 123, 134, 137, 173, 230, 259, 262, 1605
FokI GGATG 7 cut(s) 191, 422, 851, 860, 1030, 1127, 1241
Fsp4HI GCNGC 9 cut(s) 70, 123, 134, 137, 173, 230, 259, 262, 1605
FspBI CTAG 6 cut(s) 212, 513, 651, 756, 1241, 1326
GlaI GCGC 1 cut(s) 1526
GluI GCNGC 9 cut(s) 70, 123, 134, 137, 173, 230, 259, 262, 1605
GsuI CTGGAG 2 cut(s) 101, 1674
HaeII RGCGCY 1 cut(s) 1528
HaeIII GGCC 2 cut(s) 122, 1541
HapII CCGG 6 cut(s) 98, 150, 269, 289, 562, 1311
HgaI GACGC 1 cut(s) 788
HhaI GCGC 1 cut(s) 1527
Hin1II CATG 5 cut(s) 409, 558, 574, 1012, 1522
Hin6I GCGC 1 cut(s) 1525
HinP1I GCGC 1 cut(s) 1525
HinfI GANTC 9 cut(s) 101, 413, 509, 539, 1237, 1274, 1301, 1314, 1682
HpaII CCGG 6 cut(s) 98, 150, 269, 289, 562, 1311
HphI GGTGA 1 cut(s) 176
Hpy166II GTNNAC 1 cut(s) 728
Hpy188I TCNGA 8 cut(s) 466, 508, 745, 819, 1359, 1402, 1417, 1708
Hpy8I GTNNAC 1 cut(s) 728
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 3 cut(s) 980, 1168, 1189
HpyCH4III ACNGT 2 cut(s) 823, 1421
HpyCH4IV ACGT 3 cut(s) 633, 738, 1147
HpyCH4V TGCA 5 cut(s) 304, 336, 558, 595, 1254
HpyF10VI GCNNNNNNNGC 8 cut(s) 122, 142, 449, 527, 576, 857, 866, 1700
HpyF3I CTNAG 3 cut(s) 254, 1358, 1640
HpySE526I ACGT 3 cut(s) 633, 738, 1147
Hsp92II CATG 5 cut(s) 409, 558, 574, 1012, 1522
HspAI GCGC 1 cut(s) 1525
Kpn2I TCCGGA 2 cut(s) 149, 1310
Ksp22I TGATCA 1 cut(s) 166
KspI CCGCGG 1 cut(s) 126
LmnI GCTCC 5 cut(s) 130, 291, 322, 1522, 1693
Lsp1109I GCAGC 4 cut(s) 145, 184, 273, 1616
LweI GCATC 5 cut(s) 323, 814, 838, 1263, 1648
MaeI CTAG 6 cut(s) 212, 513, 651, 756, 1241, 1326
MaeII ACGT 3 cut(s) 633, 738, 1147
MaeIII GTNAC 2 cut(s) 239, 1062
MbiI CCGCTC 1 cut(s) 325
MflI RGATCY 2 cut(s) 912, 1402
MluCI AATT 5 cut(s) 467, 831, 1372, 1446, 1649
MlyI GAGTC 3 cut(s) 110, 1246, 1323
MmeI TCCRAC 2 cut(s) 288, 1440
MroI TCCGGA 2 cut(s) 149, 1310
MroXI GAANNNNTTC 1 cut(s) 885
MseI TTAA 8 cut(s) 225, 660, 900, 909, 1083, 1182, 1347, 1668
MspA1I CMGCKG 5 cut(s) 69, 79, 125, 175, 1694
MspI CCGG 6 cut(s) 98, 150, 269, 289, 562, 1311
MspR9I CCNGG 1 cut(s) 290
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 8 cut(s) 122, 142, 449, 527, 576, 857, 866, 1700
NciI CCSGG 1 cut(s) 290
NdeI CATATG 1 cut(s) 1201
NlaIII CATG 5 cut(s) 409, 558, 574, 1012, 1522
NlaIV GGNNCC 5 cut(s) 974, 1282, 1383, 1470, 1542
PagI TCATGA 1 cut(s) 1008
PcsI WCGNNNNNNNCGW 2 cut(s) 69, 613
PdmI GAANNNNTTC 1 cut(s) 885
PfeI GAWTC 6 cut(s) 413, 509, 539, 1274, 1301, 1682
PflMI CCANNNNNTGG 2 cut(s) 363, 1697
PkrI GCNGC 9 cut(s) 71, 124, 135, 138, 174, 231, 260, 263, 1606
PleI GAGTC 3 cut(s) 109, 1245, 1322
PpsI GAGTC 3 cut(s) 109, 1245, 1322
Ppu21I YACGTR 1 cut(s) 634
PpuMI RGGWCCY 1 cut(s) 1280
Psp1406I AACGTT 1 cut(s) 1147
Psp5II RGGWCCY 1 cut(s) 1280
PspN4I GGNNCC 5 cut(s) 974, 1282, 1383, 1470, 1542
PspPI GGNCC 4 cut(s) 1280, 1382, 1468, 1540
PspPPI RGGWCCY 1 cut(s) 1280
PstNI CAGNNNCTG 1 cut(s) 771
PsuI RGATCY 2 cut(s) 912, 1402
RsaI GTAC 4 cut(s) 636, 1206, 1290, 1638
RsaNI GTAC 4 cut(s) 635, 1205, 1289, 1637
SacII CCGCGG 1 cut(s) 126
SaqAI TTAA 8 cut(s) 225, 660, 900, 909, 1083, 1182, 1347, 1668
SatI GCNGC 9 cut(s) 70, 123, 134, 137, 173, 230, 259, 262, 1605
Sau96I GGNCC 4 cut(s) 1280, 1382, 1468, 1540
SchI GAGTC 3 cut(s) 110, 1246, 1323
ScrFI CCNGG 1 cut(s) 290
SfaNI GCATC 5 cut(s) 323, 814, 838, 1263, 1648
SfcI CTRYAG 2 cut(s) 438, 945
Sfr303I CCGCGG 1 cut(s) 126
SgrBI CCGCGG 1 cut(s) 126
SinI GGWCC 3 cut(s) 1280, 1382, 1468
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
SnaBI TACGTA 1 cut(s) 634
Sse9I AATT 5 cut(s) 467, 831, 1372, 1446, 1649
SspI AATATT 1 cut(s) 1345
SspMI CTAG 6 cut(s) 212, 513, 651, 756, 1241, 1326
StyD4I CCNGG 1 cut(s) 288
TaaI ACNGT 2 cut(s) 823, 1421
TaiI ACGT 3 cut(s) 636, 741, 1150
TaqI TCGA 7 cut(s) 33, 60, 616, 800, 1024, 1533, 1654
TasI AATT 5 cut(s) 467, 831, 1372, 1446, 1649
TatI WGTACW 2 cut(s) 1204, 1288
TauI GCSGC 5 cut(s) 72, 125, 139, 232, 261
TfiI GAWTC 6 cut(s) 413, 509, 539, 1274, 1301, 1682
Tru1I TTAA 8 cut(s) 225, 660, 900, 909, 1083, 1182, 1347, 1668
Tru9I TTAA 8 cut(s) 225, 660, 900, 909, 1083, 1182, 1347, 1668
TscAI CASTG 1 cut(s) 529
TseI GCWGC 4 cut(s) 133, 172, 261, 1604
TspGWI ACGGA 2 cut(s) 622, 1619
TspRI CASTG 1 cut(s) 529
Van91I CCANNNNNTGG 2 cut(s) 363, 1697
VpaK11BI GGWCC 3 cut(s) 1280, 1382, 1468
XapI RAATTY 3 cut(s) 467, 831, 1649
XmnI GAANNNNTTC 1 cut(s) 885
XspI CTAG 6 cut(s) 212, 513, 651, 756, 1241, 1326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.