Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004755

Physical Location & Seq

Genomic Coordinates Reverse (-)

62519381 .. 62525038

Gene Structure 5658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG415100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGAAGGAGAGAGAGCCGAGAAAAAGAGGCAGCTTGATCTTGACTACGACAAACTTTTGGGCGACAATGACGATTCTGACCCGCCGGAGGTACTGAGAGTGAAGAAGCCCAAAGCCATAGCCACCACCGCGGCGGCTGCGGCGGCCGACGAGCCACCGGCGATGAGCGGCGGCGATGAGGAGCTTGAGAGGATGAACAATACCGAGCTCGAAGGAGCGATTAAGCGGCAAGTAGAAAATTTGAAGCGGATGGGCTCTATACTGCCGGACAAAGGCGAAAAGCTTCGGATTTGTCTGAAGAAACTGGAGGATGAACAGGGGAGGAGGAGGCTTGAACGCTCCGAGAGGGGCACCAGTAAGGGGGAGAAGCCTACCCGAGCGACCAGCTCTGCAGGTGTTTCTAATGGCTTCAGAGATAAGGAGGCTACATCACCCCCGACCGAGCTACAGTCTTCATTTAATAAATTCTTTTCTAAAAAGTTGGATGACAATAAAGATTGTAGCAAGGGCAATGCATTTGAAAGAGAGTTATCAACTTTGGGTCACTGCAACCGCCAGAAAAGGAACAATAATGGAGAATTCTTGCAAAAGGGGGCACAGAAAGGTCGATCTTCATCAAGACATTTCTCTTCTCAAAGCCCTAGCAACTTTTATCGTGATAAAGATAAAAGTTTTCTCTCAAATGGTGATCGTAAAGGCAGAGCTTCTTCCAATAACTCAGGTCGTCACGGTGAGGAAAACTTCTCTAGCAGCATTTCAAAAAGGGAGGAACCATATCAACTTCGGAATAGGGATAGGAATAGGAAGAGTCAGACCATTTTACTTGTGGATGAGGAGGAACCCGAGTTCATGGACACCACAGAGCAAATAGAAGAAATTCCTGAGAGCATGAAAGACTCTAGAATCTACTATCCATCAAGGGATGATCCACATTCTGTTGAAATTTGTTATACAGACACTAAGTGCCTTGATCCTCAAAGCTACTTGACATCAGCTATTATGAATTTCTACATACGGTATTTACATCAACAAGCATCCCCTACAGACAGGGGAATATGTGCGTTTCATTTCTTCAATACCTTTTTTTACAATAAGCTCAAAGATGCTGTATCAGAAAAGGGGACCAACAAGGATAACCTTTTTGTCAAGCTTAGAAGGTGGTGGAAGGGTGTTGATATATTTCAGAAGGCTTACATACTTATTCCTATTAATGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009628 GO:0009651 GO:0009791 GO:0009987 GO:0010228 GO:0016787 GO:0016926 GO:0016929 GO:0018193 GO:0018205 GO:0019538 GO:0019783 GO:0022414 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0070011 GO:0070122 GO:0070137 GO:0070138 GO:0070139 GO:0070140 GO:0070646 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48

Protein Analysis

406

Amino Acids

46.52

Weight (kDa)

8.33

Isoelectric Point (pI)

55.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C48	PF02902	328 - 405	5.1e-13	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10570 AT1G10570 AT1G10570 AT1G60220
fragaria_vesca	FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560
malus_domestica	MD13G1091500.v1.1
prunus_persica	Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1
pyrus_communis	pycom13g07950
rosa_chinensis	RchiOBHm_Chr3g0455541 RchiOBHm_Chr4g0443941
rosa_laevigata	RLG00000005875
rosa_multiflora	Rmu_sc0011390.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384480
rosa_rugosa	Rorug03G0008300 Rorug04G0348400 Rorug04G0348500
rosa_samantha	Rh4AG409000 Rh4BG420100 Rh4CG434100 Rh4DG415100
rosa_wichuraiana	Rw3G005410 Rw4G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	383
Acc36I	ACCTGC	1 cut(s)	383
AccB1I	GGYRCC	1 cut(s)	350
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	1 cut(s)	131
AclWI	GGATC	2 cut(s)	920, 965
AcoI	YGGCCR	1 cut(s)	144
AcsI	RAATTY	6 cut(s)	238, 464, 578, 876, 942, 1003
AcuI	CTGAAG	2 cut(s)	317, 394
AdeI	CACNNNGTG	1 cut(s)	963
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	88, 272, 360
AgsI	TTSAA	6 cut(s)	244, 335, 521, 759, 941, 1075
AloI	GAACNNNNNNTCC	2 cut(s)	830, 862
Alw21I	GWGCWC	1 cut(s)	210
AlwI	GGATC	2 cut(s)	920, 965
Ama87I	CYCGRG	2 cut(s)	375, 842
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	31, 137, 750
ApoI	RAATTY	6 cut(s)	238, 464, 578, 876, 942, 1003
AseI	ATTAAT	1 cut(s)	1209
Asp700I	GAANNNNTTC	2 cut(s)	282, 876
AspS9I	GGNCC	1 cut(s)	1122
AsuHPI	GGTGA	3 cut(s)	423, 698, 743
AvaI	CYCGRG	2 cut(s)	375, 842
AvaII	GGWCC	1 cut(s)	1122
BaeGI	GKGCMC	2 cut(s)	353, 598
BanI	GGYRCC	1 cut(s)	350
BanII	GRGCYC	2 cut(s)	210, 257
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	210
BbvI	GCAGC	3 cut(s)	43, 124, 762
BccI	CCATC	2 cut(s)	244, 922
BfaI	CTAG	3 cut(s)	642, 747, 900
BfmI	CTRYAG	3 cut(s)	390, 446, 1041
BfuAI	ACCTGC	1 cut(s)	383
Bme18I	GGWCC	1 cut(s)	1122
BmeT110I	CYCGRG	2 cut(s)	375, 842
BmgT120I	GGNCC	1 cut(s)	1122
BmiI	GGNNCC	4 cut(s)	352, 771, 840, 1123
BmsI	GCATC	2 cut(s)	1043, 1093
BpiI	GAAGAC	1 cut(s)	444
BpmI	CTGGAG	1 cut(s)	326
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	613
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 272, 360
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	309, 354
Bse3DI	GCAATG	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	613
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	7 cut(s)	198, 255, 316, 490, 835, 928, 1034
BseJI	GATNNNNATC	1 cut(s)	613
BseLI	CCNNNNNNNGG	3 cut(s)	88, 272, 360
BseMI	GCAATG	1 cut(s)	517
BseMII	CTCAG	3 cut(s)	86, 732, 873
BseNI	ACTGG	2 cut(s)	309, 354
BseRI	GAGGAG	4 cut(s)	194, 337, 340, 848
BseSI	GKGCMC	2 cut(s)	353, 598
BseX3I	CGGCCG	1 cut(s)	144
BseXI	GCAGC	3 cut(s)	43, 124, 762
Bsh1236I	CGCG	1 cut(s)	131
Bsh1285I	CGRYCG	2 cut(s)	147, 441
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	350
BsiEI	CGRYCG	2 cut(s)	147, 441
BsiHKAI	GWGCWC	1 cut(s)	210
BsiHKCI	CYCGRG	2 cut(s)	375, 842
BsiSI	CCGG	3 cut(s)	86, 158, 266
BslFI	GGGAC	1 cut(s)	1135
BslI	CCNNNNNNNGG	3 cut(s)	88, 272, 360
BsmFI	GGGAC	1 cut(s)	1135
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	2 cut(s)	375, 842
Bsp1286I	GDGCHC	4 cut(s)	210, 257, 353, 598
Bsp143I	GATC	5 cut(s)	37, 608, 688, 925, 970
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	3 cut(s)	87, 731, 874
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	4 cut(s)	352, 771, 840, 1123
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	1 cut(s)	383
BspPI	GGATC	2 cut(s)	920, 965
BspT107I	GGYRCC	1 cut(s)	350
BsrBI	CCGCTC	1 cut(s)	168
BsrDI	GCAATG	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	309, 354
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	37, 608, 688, 925, 970
Bst4CI	ACNGT	3 cut(s)	450, 731, 1017
Bst6I	CTCTTC	3 cut(s)	634, 800, 1209
BstDEI	CTNAG	5 cut(s)	95, 718, 882, 960, 1151
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	7 cut(s)	198, 255, 316, 490, 835, 928, 1034
BstFNI	CGCG	1 cut(s)	131
BstKTI	GATC	5 cut(s)	40, 611, 691, 928, 973
BstMBI	GATC	5 cut(s)	37, 608, 688, 925, 970
BstMCI	CGRYCG	2 cut(s)	147, 441
BstMWI	GCNNNNNNNGC	4 cut(s)	128, 137, 140, 143
BstSFI	CTRYAG	3 cut(s)	390, 446, 1041
BstSLI	GKGCMC	2 cut(s)	353, 598
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	43, 124, 762
BstV2I	GAAGAC	1 cut(s)	444
BstZI	CGGCCG	1 cut(s)	144
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	2 cut(s)	176, 189
BtsCI	GGATG	7 cut(s)	198, 255, 316, 490, 835, 928, 1034
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
BveI	ACCTGC	1 cut(s)	383
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	1122
Cfr42I	CCGCGG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	2 cut(s)	850, 889
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	5 cut(s)	95, 718, 882, 960, 1151
DpnI	GATC	5 cut(s)	39, 610, 690, 927, 972
DpnII	GATC	5 cut(s)	37, 608, 688, 925, 970
DraIII	CACNNNGTG	1 cut(s)	963
EaeI	YGGCCR	1 cut(s)	144
EagI	CGGCCG	1 cut(s)	144
Eam1104I	CTCTTC	3 cut(s)	634, 800, 1209
EarI	CTCTTC	3 cut(s)	634, 800, 1209
Ecl136II	GAGCTC	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	144
Eco24I	GRGCYC	2 cut(s)	210, 257
Eco47I	GGWCC	1 cut(s)	1122
Eco52I	CGGCCG	1 cut(s)	144
Eco53kI	GAGCTC	1 cut(s)	208
Eco57I	CTGAAG	2 cut(s)	317, 394
Eco88I	CYCGRG	2 cut(s)	375, 842
EcoICRI	GAGCTC	1 cut(s)	208
EcoRI	GAATTC	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	517
EcoT38I	GRGCYC	2 cut(s)	210, 257
FaeI	CATG	2 cut(s)	853, 892
FaqI	GGGAC	1 cut(s)	1135
FatI	CATG	2 cut(s)	849, 888
FauI	CCCGC	1 cut(s)	90
FokI	GGATG	7 cut(s)	205, 262, 323, 497, 842, 935, 1021
FriOI	GRGCYC	2 cut(s)	210, 257
FspBI	CTAG	3 cut(s)	642, 747, 900
GsuI	CTGGAG	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	3 cut(s)	86, 158, 266
Hin1II	CATG	2 cut(s)	853, 892
HindIII	AAGCTT	2 cut(s)	281, 1148
HinfI	GANTC	4 cut(s)	74, 808, 896, 903
HpaII	CCGG	3 cut(s)	86, 158, 266
HphI	GGTGA	3 cut(s)	423, 698, 743
Hpy188I	TCNGA	9 cut(s)	79, 288, 297, 343, 413, 786, 813, 1114, 1185
Hpy188III	TCNNGA	5 cut(s)	41, 618, 656, 881, 900
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	4 cut(s)	206, 1149, 1159, 1180
HpyCH4III	ACNGT	3 cut(s)	450, 731, 1017
HpyCH4V	TGCA	4 cut(s)	392, 515, 549, 586
HpyF10VI	GCNNNNNNNGC	4 cut(s)	128, 137, 140, 143
HpyF3I	CTNAG	5 cut(s)	95, 718, 882, 960, 1151
Hsp92II	CATG	2 cut(s)	853, 892
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	37, 608, 688, 925, 970
LmnI	GCTCC	3 cut(s)	181, 215, 344
Lsp1109I	GCAGC	3 cut(s)	43, 124, 762
LweI	GCATC	2 cut(s)	1043, 1093
MaeI	CTAG	3 cut(s)	642, 747, 900
MaeIII	GTNAC	2 cut(s)	542, 725
MalI	GATC	5 cut(s)	39, 610, 690, 927, 972
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	5 cut(s)	37, 608, 688, 925, 970
MboII	GAAGA	9 cut(s)	115, 310, 444, 603, 621, 699, 817, 884, 1063
MhlI	GDGCHC	4 cut(s)	210, 257, 353, 598
MluCI	AATT	6 cut(s)	238, 464, 578, 876, 942, 1003
MlyI	GAGTC	2 cut(s)	817, 890
MmeI	TCCRAC	1 cut(s)	462
Mph1103I	ATGCAT	1 cut(s)	517
MroXI	GAANNNNTTC	2 cut(s)	282, 876
MseI	TTAA	3 cut(s)	222, 459, 1209
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	3 cut(s)	86, 158, 266
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	4 cut(s)	128, 137, 140, 143
NdeII	GATC	5 cut(s)	37, 608, 688, 925, 970
NlaIII	CATG	2 cut(s)	853, 892
NlaIV	GGNNCC	4 cut(s)	352, 771, 840, 1123
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	2 cut(s)	542, 725
NsiI	ATGCAT	1 cut(s)	517
PaqCI	CACCTGC	1 cut(s)	383
PdmI	GAANNNNTTC	2 cut(s)	282, 876
PfeI	GAWTC	2 cut(s)	74, 903
PleI	GAGTC	2 cut(s)	816, 890
PpsI	GAGTC	2 cut(s)	816, 890
PshBI	ATTAAT	1 cut(s)	1209
Psp124BI	GAGCTC	1 cut(s)	210
PspN4I	GGNNCC	4 cut(s)	352, 771, 840, 1123
PspPI	GGNCC	1 cut(s)	1122
PstI	CTGCAG	1 cut(s)	394
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	210
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	222, 459, 1209
Sau3AI	GATC	5 cut(s)	37, 608, 688, 925, 970
Sau96I	GGNCC	1 cut(s)	1122
SchI	GAGTC	2 cut(s)	817, 890
SduI	GDGCHC	4 cut(s)	210, 257, 353, 598
SfaNI	GCATC	2 cut(s)	1043, 1093
SfcI	CTRYAG	3 cut(s)	390, 446, 1041
Sfr303I	CCGCGG	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	1122
SmlI	CTYRAG	1 cut(s)	185
SmoI	CTYRAG	1 cut(s)	185
Sse9I	AATT	6 cut(s)	238, 464, 578, 876, 942, 1003
SspMI	CTAG	3 cut(s)	642, 747, 900
SstI	GAGCTC	1 cut(s)	210
TaaI	ACNGT	3 cut(s)	450, 731, 1017
TaqI	TCGA	2 cut(s)	210, 607
TaqII	GACCGA	1 cut(s)	455
TasI	AATT	6 cut(s)	238, 464, 578, 876, 942, 1003
TauI	GCSGC	7 cut(s)	134, 137, 143, 146, 171, 174, 229
TfiI	GAWTC	2 cut(s)	74, 903
Tru1I	TTAA	3 cut(s)	222, 459, 1209
Tru9I	TTAA	3 cut(s)	222, 459, 1209
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	2 cut(s)	542, 725
TseI	GCWGC	3 cut(s)	31, 137, 750
Tsp45I	GTSAC	2 cut(s)	542, 725
TspDTI	ATGAA	8 cut(s)	209, 327, 444, 603, 838, 905, 1016, 1055
TspRI	CASTG	1 cut(s)	551
VpaK11BI	GGWCC	1 cut(s)	1122
VspI	ATTAAT	1 cut(s)	1209
XapI	RAATTY	6 cut(s)	238, 464, 578, 876, 942, 1003
XbaI	TCTAGA	1 cut(s)	899
XcmI	CCANNNNNNNNNTGG	1 cut(s)	823
XmnI	GAANNNNTTC	2 cut(s)	282, 876
XspI	CTAG	3 cut(s)	642, 747, 900
Zsp2I	ATGCAT	1 cut(s)	517

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.