Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004755

Physical Location & Seq

Genomic Coordinates Reverse (-)

70906814 .. 70912322

Gene Structure 5509 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG409000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAAGGAGAGAGAGCCGAAAAGAAGAGGCAGCTTGATCTTGACTTTGACGAACTTTTGTGCGACAATGACGATTCTGACCCGCCGGAGGTACTGAGAGTGAAGAAGCCCAAAGCCATAGCCACCACCGCGGCGGCCGACGAGCCACCGGCGATGAGCGGCGGCGATGAGGAGCTTGAGAAGATGAACAATATCGAGCTCGAAGGAGCGATTAAGCGGCAAGTAGAAAATTTGAAGCGGATGGGCTCTATATTGCCGGACAAAGGCGAAAAGCTTCGGATTTGTCTGAAGAAACTGGAGGATGAACAGGGGAGGAGGAGGCTTGAACGCTCCGAGAGGGGCACCAGTAAGGGGGAGAAGCCTACCCGAGCGACCAGCTCTGCAGGTGTTCCTAATGGCTTCAGAGATAAGGAGGCTACATCACCCCCGAGCGAGCTACAGTCTTCATTTAATAAATTCTTTTCTAAAAATTTGGATGACAATAAAGATTGTAGCAAGGGCAATGCATTTGAAAGAGAGTTATCAACTTTGGGTCACTGCAACCGCCAGAAAAGGAACAATAATGGAGAATTCTTGCAAAAGGGGGCACAGAAAGGTCGATCTTCATCAAGACATTTCACTTCTCAAAGCCCTAGCAACTTTTATCGCGATAAAGATAAAAGTTTTATCTCAAATGGTGATCGTAAAGGCAGAGCTTCTTCCAATAACTCTGGTCGTCATGGTGAGGAAAACTTCTCTAGCAGCATTGCAAAAAGGGAGGAACCATATCAACTTCGGAATAGGGATAGGAATAGGAAGAGTCAGACCATTTTACTTGTGGATGAGGAGGAACCCGAGTTCATGGACACCACAGAGCAAATAGAAGAAATTCCTGAGAGCATGAAAGACTCTAGAATCTACTATCCATCAAGGGATGATCCACATTCTGTTGAAATTTGTTATACAGACACCAAGTGCCTTGATCCTCAAAGCTACTTGACATCAGCTATTATGAATTTCTACATACGGTATTTACATCAACAAGCATCCCCTACAGACAGGGGAATATGTGTGTTTCATTTCTTCAATACCTTTTTTTACAATAAGCTCAAAGATGCTGTATCAGAAAAGGTAATAGTTTATCTTGGTTTCTTTAAAAGGGTTTGCTTTTTCCTCCAAAAAATATCTCTAGTTCTTAACTCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

45.26

Weight (kDa)

7.54

Isoelectric Point (pI)

58.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004755)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10570 AT1G10570 AT1G10570 AT1G60220
fragaria_vesca	FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560 FvH4_4g34560
malus_domestica	MD13G1091500.v1.1
prunus_persica	Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1 Prupe.1G254600_v2.0.a1
pyrus_communis	pycom13g07950
rosa_chinensis	RchiOBHm_Chr3g0455541 RchiOBHm_Chr4g0443941
rosa_laevigata	RLG00000005875
rosa_multiflora	Rmu_sc0011390.1_g000004
rosa_roxburghii	Rroxscaffold_5G00384480
rosa_rugosa	Rorug03G0008300 Rorug04G0348400 Rorug04G0348500
rosa_samantha	Rh4AG409000 Rh4BG420100 Rh4CG434100 Rh4DG415100
rosa_wichuraiana	Rw3G005410 Rw4G035130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	374
Acc36I	ACCTGC	1 cut(s)	374
AccB1I	GGYRCC	1 cut(s)	341
AccBSI	CCGCTC	1 cut(s)	159
AccII	CGCG	2 cut(s)	131, 648
AciI	CCGC	9 cut(s)	83, 129, 131, 134, 159, 162, 217, 238, 544
AclWI	GGATC	2 cut(s)	911, 956
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	7 cut(s)	229, 455, 469, 569, 867, 933, 994
AcuI	CTGAAG	2 cut(s)	308, 385
AdeI	CACNNNGTG	1 cut(s)	954
AfaI	GTAC	1 cut(s)	93
AfiI	CCNNNNNNNGG	3 cut(s)	88, 263, 351
AgsI	TTSAA	5 cut(s)	235, 326, 512, 932, 1066
AloI	GAACNNNNNNTCC	2 cut(s)	821, 853
Alw21I	GWGCWC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	911, 956
Ama87I	CYCGRG	3 cut(s)	366, 427, 833
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	31, 741
ApoI	RAATTY	7 cut(s)	229, 455, 469, 569, 867, 933, 994
Asp700I	GAANNNNTTC	2 cut(s)	273, 867
AsuHPI	GGTGA	3 cut(s)	414, 689, 734
AvaI	CYCGRG	3 cut(s)	366, 427, 833
BaeGI	GKGCMC	2 cut(s)	344, 589
BanI	GGYRCC	1 cut(s)	341
BanII	GRGCYC	2 cut(s)	201, 248
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	2 cut(s)	43, 753
BccI	CCATC	2 cut(s)	235, 913
BfaI	CTAG	4 cut(s)	633, 738, 891, 1169
BfmI	CTRYAG	3 cut(s)	381, 437, 1032
BfuAI	ACCTGC	1 cut(s)	374
BisI	GCNGC	7 cut(s)	32, 132, 135, 160, 163, 218, 742
BlsI	GCNGC	7 cut(s)	33, 133, 136, 161, 164, 219, 743
BmeT110I	CYCGRG	3 cut(s)	366, 427, 833
BmiI	GGNNCC	3 cut(s)	343, 762, 831
BmsI	GCATC	2 cut(s)	1034, 1084
BpiI	GAAGAC	1 cut(s)	435
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	1 cut(s)	197
BsaBI	GATNNNNATC	1 cut(s)	604
BsaJI	CCNNGG	1 cut(s)	129
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 263, 351
Bse118I	RCCGGY	1 cut(s)	148
Bse1I	ACTGG	2 cut(s)	300, 345
Bse3DI	GCAATG	2 cut(s)	508, 744
Bse8I	GATNNNNATC	1 cut(s)	604
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	6 cut(s)	246, 307, 481, 826, 919, 1025
BseJI	GATNNNNATC	1 cut(s)	604
BseLI	CCNNNNNNNGG	3 cut(s)	88, 263, 351
BseMI	GCAATG	2 cut(s)	508, 744
BseMII	CTCAG	2 cut(s)	86, 864
BseNI	ACTGG	2 cut(s)	300, 345
BseRI	GAGGAG	4 cut(s)	185, 328, 331, 839
BseSI	GKGCMC	2 cut(s)	344, 589
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	43, 753
Bsh1236I	CGCG	2 cut(s)	131, 648
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	1 cut(s)	341
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	201
BsiHKCI	CYCGRG	3 cut(s)	366, 427, 833
BsiSI	CCGG	3 cut(s)	86, 149, 257
BslI	CCNNNNNNNGG	3 cut(s)	88, 263, 351
BsnI	GGCC	1 cut(s)	137
BsoBI	CYCGRG	3 cut(s)	366, 427, 833
Bsp1286I	GDGCHC	4 cut(s)	201, 248, 344, 589
Bsp143I	GATC	5 cut(s)	37, 599, 679, 916, 961
Bsp68I	TCGCGA	1 cut(s)	648
BspACI	CCGC	9 cut(s)	83, 129, 131, 134, 159, 162, 217, 238, 544
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	2 cut(s)	87, 865
BspFNI	CGCG	2 cut(s)	131, 648
BspLI	GGNNCC	3 cut(s)	343, 762, 831
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	374
BspPI	GGATC	2 cut(s)	911, 956
BspT107I	GGYRCC	1 cut(s)	341
BsrBI	CCGCTC	1 cut(s)	159
BsrDI	GCAATG	2 cut(s)	508, 744
BsrFI	RCCGGY	1 cut(s)	148
BsrI	ACTGG	2 cut(s)	300, 345
BssAI	RCCGGY	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	37, 599, 679, 916, 961
Bst4CI	ACNGT	2 cut(s)	441, 1008
Bst6I	CTCTTC	2 cut(s)	20, 791
BstC8I	GCNNGC	1 cut(s)	434
BstDEI	CTNAG	2 cut(s)	95, 873
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	6 cut(s)	246, 307, 481, 826, 919, 1025
BstFNI	CGCG	2 cut(s)	131, 648
BstKTI	GATC	5 cut(s)	40, 602, 682, 919, 964
BstMBI	GATC	5 cut(s)	37, 599, 679, 916, 961
BstMCI	CGRYCG	1 cut(s)	138
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstSFI	CTRYAG	3 cut(s)	381, 437, 1032
BstSLI	GKGCMC	2 cut(s)	344, 589
BstUI	CGCG	2 cut(s)	131, 648
BstV1I	GCAGC	2 cut(s)	43, 753
BstV2I	GAAGAC	1 cut(s)	435
BstZI	CGGCCG	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	137
BtgI	CCRYGG	1 cut(s)	129
BtgZI	GCGATG	2 cut(s)	167, 180
BtsCI	GGATG	6 cut(s)	246, 307, 481, 826, 919, 1025
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
BtuMI	TCGCGA	1 cut(s)	648
BveI	ACCTGC	1 cut(s)	374
Cac8I	GCNNGC	1 cut(s)	434
Cfr10I	RCCGGY	1 cut(s)	148
Cfr42I	CCGCGG	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	92
CviAII	CATG	3 cut(s)	719, 841, 880
CviQI	GTAC	1 cut(s)	92
DdeI	CTNAG	2 cut(s)	95, 873
DpnI	GATC	5 cut(s)	39, 601, 681, 918, 963
DpnII	GATC	5 cut(s)	37, 599, 679, 916, 961
DraI	TTTAAA	1 cut(s)	1135
DraIII	CACNNNGTG	1 cut(s)	954
EaeI	YGGCCR	1 cut(s)	135
EagI	CGGCCG	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	20, 791
EarI	CTCTTC	2 cut(s)	20, 791
Ecl136II	GAGCTC	1 cut(s)	199
EclXI	CGGCCG	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	201, 248
Eco52I	CGGCCG	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	199
Eco57I	CTGAAG	2 cut(s)	308, 385
Eco88I	CYCGRG	3 cut(s)	366, 427, 833
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	508
EcoT38I	GRGCYC	2 cut(s)	201, 248
FaeI	CATG	3 cut(s)	722, 844, 883
FatI	CATG	3 cut(s)	718, 840, 879
FauI	CCCGC	1 cut(s)	90
Fnu4HI	GCNGC	7 cut(s)	32, 132, 135, 160, 163, 218, 742
FokI	GGATG	6 cut(s)	253, 314, 488, 833, 926, 1012
FriOI	GRGCYC	2 cut(s)	201, 248
Fsp4HI	GCNGC	7 cut(s)	32, 132, 135, 160, 163, 218, 742
FspBI	CTAG	4 cut(s)	633, 738, 891, 1169
GluI	GCNGC	7 cut(s)	32, 132, 135, 160, 163, 218, 742
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	3 cut(s)	86, 149, 257
Hin1II	CATG	3 cut(s)	722, 844, 883
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	4 cut(s)	74, 799, 887, 894
HpaII	CCGG	3 cut(s)	86, 149, 257
HphI	GGTGA	3 cut(s)	414, 689, 734
Hpy188I	TCNGA	8 cut(s)	79, 279, 288, 334, 404, 777, 804, 1105
Hpy188III	TCNNGA	5 cut(s)	41, 609, 647, 872, 891
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	2 cut(s)	441, 1008
HpyCH4V	TGCA	5 cut(s)	383, 506, 540, 577, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	2 cut(s)	95, 873
Hsp92II	CATG	3 cut(s)	722, 844, 883
KspI	CCGCGG	1 cut(s)	132
Kzo9I	GATC	5 cut(s)	37, 599, 679, 916, 961
LmnI	GCTCC	3 cut(s)	172, 206, 335
Lsp1109I	GCAGC	2 cut(s)	43, 753
LweI	GCATC	2 cut(s)	1034, 1084
MaeI	CTAG	4 cut(s)	633, 738, 891, 1169
MaeIII	GTNAC	1 cut(s)	533
MalI	GATC	5 cut(s)	39, 601, 681, 918, 963
MbiI	CCGCTC	1 cut(s)	159
MboI	GATC	5 cut(s)	37, 599, 679, 916, 961
MhlI	GDGCHC	4 cut(s)	201, 248, 344, 589
MluCI	AATT	7 cut(s)	229, 455, 469, 569, 867, 933, 994
MlyI	GAGTC	2 cut(s)	808, 881
Mph1103I	ATGCAT	1 cut(s)	508
MroXI	GAANNNNTTC	2 cut(s)	273, 867
MseI	TTAA	4 cut(s)	213, 450, 1134, 1176
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	3 cut(s)	86, 149, 257
MvnI	CGCG	2 cut(s)	131, 648
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	5 cut(s)	37, 599, 679, 916, 961
NlaIII	CATG	3 cut(s)	722, 844, 883
NlaIV	GGNNCC	3 cut(s)	343, 762, 831
NmuCI	GTSAC	1 cut(s)	533
NruI	TCGCGA	1 cut(s)	648
NsiI	ATGCAT	1 cut(s)	508
PaqCI	CACCTGC	1 cut(s)	374
PdmI	GAANNNNTTC	2 cut(s)	273, 867
PfeI	GAWTC	2 cut(s)	74, 894
PkrI	GCNGC	7 cut(s)	33, 133, 136, 161, 164, 219, 743
PleI	GAGTC	2 cut(s)	807, 881
PpsI	GAGTC	2 cut(s)	807, 881
Psp124BI	GAGCTC	1 cut(s)	201
PspN4I	GGNNCC	3 cut(s)	343, 762, 831
PstI	CTGCAG	1 cut(s)	385
RruI	TCGCGA	1 cut(s)	648
RsaI	GTAC	1 cut(s)	93
RsaNI	GTAC	1 cut(s)	92
SacI	GAGCTC	1 cut(s)	201
SacII	CCGCGG	1 cut(s)	132
SaqAI	TTAA	4 cut(s)	213, 450, 1134, 1176
SatI	GCNGC	7 cut(s)	32, 132, 135, 160, 163, 218, 742
Sau3AI	GATC	5 cut(s)	37, 599, 679, 916, 961
SchI	GAGTC	2 cut(s)	808, 881
SduI	GDGCHC	4 cut(s)	201, 248, 344, 589
SfaNI	GCATC	2 cut(s)	1034, 1084
SfcI	CTRYAG	3 cut(s)	381, 437, 1032
Sfr303I	CCGCGG	1 cut(s)	132
SgrAI	CRCCGGYG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	132
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	7 cut(s)	229, 455, 469, 569, 867, 933, 994
SsiI	CCGC	9 cut(s)	83, 129, 131, 134, 159, 162, 217, 238, 544
SspMI	CTAG	4 cut(s)	633, 738, 891, 1169
SstI	GAGCTC	1 cut(s)	201
TaaI	ACNGT	2 cut(s)	441, 1008
TaqI	TCGA	3 cut(s)	195, 201, 598
TasI	AATT	7 cut(s)	229, 455, 469, 569, 867, 933, 994
TauI	GCSGC	5 cut(s)	134, 137, 162, 165, 220
TfiI	GAWTC	2 cut(s)	74, 894
Tru1I	TTAA	4 cut(s)	213, 450, 1134, 1176
Tru9I	TTAA	4 cut(s)	213, 450, 1134, 1176
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	2 cut(s)	31, 741
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	8 cut(s)	200, 318, 435, 594, 829, 896, 1007, 1046
TspRI	CASTG	1 cut(s)	542
XapI	RAATTY	7 cut(s)	229, 455, 469, 569, 867, 933, 994
XbaI	TCTAGA	1 cut(s)	890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	814
XmnI	GAANNNNTTC	2 cut(s)	273, 867
XspI	CTAG	4 cut(s)	633, 738, 891, 1169
Zsp2I	ATGCAT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.