RchiOBHm_Chr3g0459831

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0022710
Physical Location & Seq
Forward (+)
8162864 .. 8163578
715 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 654 bp
ATGTTTCTGATGCATGTCCCAGCCTTTCTGTGTTTGCCTGATGATTTAGTGATTTTCAAGCATTCCCGAATTATTCAGGAAGTAATTAGAAAGTGGAAATTTTTGGAACAGTTGTGTTTGGGTGGCAACATCAAGAAAATTAGATCACTATTCATGTTCTGCGAACATCGCCGCCGCTTGAGTGAACATTTTAAGGCATTGTTGGCTTTGGGGTCATGGGACAAGAGGGAAAATTTGGCTCCAATCCTGGTTCAGATCAGCGAGCACTGCAAGCACTTTACAGGTTTAAAAATCGTTGATGCCTCTGTTGAAGAACTTGAGGCATATACAATTGTGGAGTCTCTTCCAAATCTGAAGCAGTTGTGTGCCATAGAGTCTTACCTTAAACGGGATAGTCTTATCAAAATACTGCGGGACTGCAAAAACCTTGAGCTTTTAGATGTTAGGAATTCTGAAGGTTTTGATGAAGGTGATGATGAAATATCAAAGCTTGCTTCCCATATCGAATTTCTGTGTGAGGGTTCTTACAGTCTTAATAGTCGTAGTAGTTTCAATTTTAGCTATAGGCTGCTTTTTCTATCTGAGCTCAAAATGGAAGGTCGTGTCGCGAGGTCCACCCGCCGACCCGCGGAAAGGCACCAAGAAAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

217

Amino Acids

25.32

Weight (kDa)

7.64

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022710)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459831
rosa_laevigata RLG00000025057
rosa_samantha Rh3BG099600 Rh3DG101000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 636
AccII CGCG 2 cut(s) 608, 629
AciI CCGC 6 cut(s) 172, 175, 412, 619, 627, 629
AcsI RAATTY 4 cut(s) 98, 232, 448, 506
AcuI CTGAAG 2 cut(s) 374, 474
AfiI CCNNNNNNNGG 3 cut(s) 388, 628, 633
AgsI TTSAA 3 cut(s) 58, 311, 553
AjnI CCWGG 1 cut(s) 246
AluBI AGCT 4 cut(s) 433, 490, 561, 586
AluI AGCT 4 cut(s) 433, 490, 561, 586
Alw21I GWGCWC 2 cut(s) 267, 588
Alw26I GTCTC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 568
ApoI RAATTY 4 cut(s) 98, 232, 448, 506
AspS9I GGNCC 1 cut(s) 612
AsuHPI GGTGA 1 cut(s) 482
AvaII GGWCC 1 cut(s) 612
BanI GGYRCC 1 cut(s) 636
BanII GRGCYC 1 cut(s) 588
Bbv12I GWGCWC 2 cut(s) 267, 588
BbvI GCAGC 1 cut(s) 555
BciT130I CCWGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 562
BisI GCNGC 3 cut(s) 172, 175, 569
BlsI GCNGC 3 cut(s) 173, 176, 570
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 1 cut(s) 612
BmgT120I GGNCC 1 cut(s) 612
BmiI GGNNCC 2 cut(s) 240, 638
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 289
BpuEI CTTGAG 3 cut(s) 199, 338, 449
BsaJI CCNNGG 1 cut(s) 627
Bsc4I CCNNNNNNNGG 3 cut(s) 388, 628, 633
BseBI CCWGG 1 cut(s) 248
BseDI CCNNGG 1 cut(s) 627
BseLI CCNNNNNNNGG 3 cut(s) 388, 628, 633
BseMII CTCAG 1 cut(s) 573
BseXI GCAGC 1 cut(s) 555
BseYI CCCAGC 1 cut(s) 19
Bsh1236I CGCG 2 cut(s) 608, 629
BshNI GGYRCC 1 cut(s) 636
BsiHKAI GWGCWC 2 cut(s) 267, 588
BslFI GGGAC 3 cut(s) 2, 233, 428
BslI CCNNNNNNNGG 3 cut(s) 388, 628, 633
BsmAI GTCTC 1 cut(s) 345
BsmFI GGGAC 3 cut(s) 2, 233, 428
BsmI GAATGC 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 267, 588
Bsp143I GATC 2 cut(s) 143, 255
Bsp68I TCGCGA 1 cut(s) 608
BspACI CCGC 6 cut(s) 172, 175, 412, 619, 627, 629
BspCNI CTCAG 1 cut(s) 574
BspFNI CGCG 2 cut(s) 608, 629
BspLI GGNNCC 2 cut(s) 240, 638
BspT107I GGYRCC 1 cut(s) 636
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 2 cut(s) 143, 255
Bst2UI CCWGG 1 cut(s) 248
Bst4CI ACNGT 2 cut(s) 111, 530
Bst6I CTCTTC 1 cut(s) 348
BstC8I GCNNGC 3 cut(s) 263, 272, 492
BstDEI CTNAG 1 cut(s) 582
BstDSI CCRYGG 1 cut(s) 627
BstFNI CGCG 2 cut(s) 608, 629
BstKTI GATC 2 cut(s) 146, 258
BstMAI GTCTC 1 cut(s) 345
BstMBI GATC 2 cut(s) 143, 255
BstMWI GCNNNNNNNGC 4 cut(s) 168, 203, 267, 271
BstNI CCWGG 1 cut(s) 248
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 562
BstUI CGCG 2 cut(s) 608, 629
BstV1I GCAGC 1 cut(s) 555
BtgI CCRYGG 1 cut(s) 627
BtgZI GCGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 265
BtuMI TCGCGA 1 cut(s) 608
Cac8I GCNNGC 3 cut(s) 263, 272, 492
Cfr13I GGNCC 1 cut(s) 612
Cfr42I CCGCGG 1 cut(s) 630
CviAII CATG 3 cut(s) 14, 154, 216
CviJI RGCY 8 cut(s) 23, 206, 239, 433, 490, 561, 568, 586
CviKI_1 RGCY 8 cut(s) 23, 206, 239, 433, 490, 561, 568, 586
DdeI CTNAG 1 cut(s) 582
DpnI GATC 2 cut(s) 145, 257
DpnII GATC 2 cut(s) 143, 255
DraI TTTAAA 1 cut(s) 288
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
Ecl136II GAGCTC 1 cut(s) 586
Eco24I GRGCYC 1 cut(s) 588
Eco47I GGWCC 1 cut(s) 612
Eco53kI GAGCTC 1 cut(s) 586
Eco57I CTGAAG 2 cut(s) 374, 474
EcoICRI GAGCTC 1 cut(s) 586
EcoRI GAATTC 1 cut(s) 448
EcoRII CCWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 588
FaeI CATG 3 cut(s) 17, 157, 219
FaiI YATR 8 cut(s) 15, 155, 217, 325, 327, 371, 501, 564
FaqI GGGAC 3 cut(s) 2, 233, 428
FatI CATG 3 cut(s) 13, 153, 215
FauI CCCGC 3 cut(s) 405, 626, 634
Fnu4HI GCNGC 3 cut(s) 172, 175, 569
FriOI GRGCYC 1 cut(s) 588
Fsp4HI GCNGC 3 cut(s) 172, 175, 569
GluI GCNGC 3 cut(s) 172, 175, 569
GsaI CCCAGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 17, 157, 219
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 338, 374
HphI GGTGA 1 cut(s) 482
Hpy166II GTNNAC 2 cut(s) 185, 615
Hpy188I TCNGA 5 cut(s) 9, 255, 354, 454, 583
Hpy188III TCNNGA 4 cut(s) 66, 77, 133, 607
Hpy8I GTNNAC 2 cut(s) 185, 615
HpyAV CCTTC 3 cut(s) 449, 461, 590
HpyCH4III ACNGT 2 cut(s) 111, 530
HpyCH4V TGCA 3 cut(s) 13, 270, 420
HpyF10VI GCNNNNNNNGC 4 cut(s) 168, 203, 267, 271
HpyF3I CTNAG 1 cut(s) 582
Hsp92II CATG 3 cut(s) 17, 157, 219
KspI CCGCGG 1 cut(s) 630
Kzo9I GATC 2 cut(s) 143, 255
LmnI GCTCC 1 cut(s) 244
LpnPI CCDG 6 cut(s) 33, 51, 62, 233, 260, 267
Lsp1109I GCAGC 1 cut(s) 555
LweI GCATC 1 cut(s) 289
MalI GATC 2 cut(s) 145, 257
MboI GATC 2 cut(s) 143, 255
MboII GAAGA 2 cut(s) 323, 335
MfeI CAATTG 2 cut(s) 330, 649
MhlI GDGCHC 2 cut(s) 267, 588
MlyI GAGTC 2 cut(s) 347, 383
MnlI CCTC 5 cut(s) 219, 313, 313, 511, 603
Mph1103I ATGCAT 1 cut(s) 15
MseI TTAA 4 cut(s) 192, 287, 384, 534
MspA1I CMGCKG 1 cut(s) 629
MspR9I CCNGG 1 cut(s) 248
MunI CAATTG 2 cut(s) 330, 649
Mva1269I GAATGC 1 cut(s) 61
MvaI CCWGG 1 cut(s) 248
MvnI CGCG 2 cut(s) 608, 629
MwoI GCNNNNNNNGC 4 cut(s) 168, 203, 267, 271
NdeII GATC 2 cut(s) 143, 255
NlaIII CATG 3 cut(s) 17, 157, 219
NlaIV GGNNCC 2 cut(s) 240, 638
NruI TCGCGA 1 cut(s) 608
NsiI ATGCAT 1 cut(s) 15
NspI RCATGY 1 cut(s) 17
PctI GAATGC 1 cut(s) 61
PkrI GCNGC 3 cut(s) 173, 176, 570
PleI GAGTC 2 cut(s) 346, 382
PpsI GAGTC 2 cut(s) 346, 382
Psp124BI GAGCTC 1 cut(s) 588
Psp6I CCWGG 1 cut(s) 246
PspFI CCCAGC 1 cut(s) 19
PspGI CCWGG 1 cut(s) 246
PspN4I GGNNCC 2 cut(s) 240, 638
PspPI GGNCC 1 cut(s) 612
RruI TCGCGA 1 cut(s) 608
SacI GAGCTC 1 cut(s) 588
SacII CCGCGG 1 cut(s) 630
SaqAI TTAA 4 cut(s) 192, 287, 384, 534
SatI GCNGC 3 cut(s) 172, 175, 569
Sau3AI GATC 2 cut(s) 143, 255
Sau96I GGNCC 1 cut(s) 612
SchI GAGTC 2 cut(s) 347, 383
ScrFI CCNGG 1 cut(s) 248
SduI GDGCHC 2 cut(s) 267, 588
SfaNI GCATC 1 cut(s) 289
SfcI CTRYAG 1 cut(s) 562
Sfr303I CCGCGG 1 cut(s) 630
SgrBI CCGCGG 1 cut(s) 630
SinI GGWCC 1 cut(s) 612
SmlI CTYRAG 3 cut(s) 178, 317, 428
SmoI CTYRAG 3 cut(s) 178, 317, 428
SsiI CCGC 6 cut(s) 172, 175, 412, 619, 627, 629
SstI GAGCTC 1 cut(s) 588
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 111, 530
TaqI TCGA 1 cut(s) 504
TauI GCSGC 2 cut(s) 174, 177
Tru1I TTAA 4 cut(s) 192, 287, 384, 534
Tru9I TTAA 4 cut(s) 192, 287, 384, 534
TscAI CASTG 1 cut(s) 272
TseI GCWGC 1 cut(s) 568
TspDTI ATGAA 3 cut(s) 142, 480, 492
TspRI CASTG 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 612
XapI RAATTY 4 cut(s) 98, 232, 448, 506
XceI RCATGY 1 cut(s) 17
Zsp2I ATGCAT 1 cut(s) 15
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.