RLG00000025057

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0022710
Physical Location & Seq
Reverse (-)
41639268 .. 41640357
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025057

Sequence Viewer

Length: 966 bp
ATGGACCATGGAGGCAAATTTGCTCGACGAAGGAAAGCACTGACTAAGAAGATGGATACACGAAGATTGGAGGAACTAGACATGGATTGCTTATGGAATATTTTTGGAAGAATTGGAATGGAGTCACTGGTTTTGGCCATCCCTTTTGTCTGCAAGTCATGTCGACCTGAGAGTTTCAGTCCCTTTTACGATAAGTACATAGAAAAATACCAAATTGACAAGAGTCGTTTCTCTATCACTGCTTTTATAAAGTTGGTAGTCAATCGAAGCAATGGAAAGGCTCTTCAACTCAAGATGCCTGAGTTTTCTACGGAAGATGCGTTGAGATATGTTTCTGATGCATGTCCCAGCCTTAGGGTTCTGTGTTTGCCTGATGATTTAGTGATTTCCAAGCATTCCCGAATTATTCCGGAAGTAATTGGAAAGTGGAAAATTTTGGAACAGTTGTGTTTGGGTGGCAACATCAAGAAAATTAGATCACTATTCATATTCTGCGAACATCGCCGCTTGAGTGAACATTTTAAGGCATTGTTGGCTTTGGGGTCATGGGACAAGAGGGAAAAGTATCAACATTATTTGGCTCCAATCCTGGTTCAGATCAGCGAGCACTGCAAGCACTTTACAGAACTTGAGGCATATACAATTGTGGAGTCTCTTCCAAATCTGAAGCAGTTGTGTGCTATAGAGTCTTACCTTAAACGGGATAGTCTTATCACAATACTGCGGGACTGCAAAAACCTTGAGCTTTTATATGTTAGGAATTCTGAAGGTTTTGATGAAGGTGGAGATGAAATATCAAAGCTTGTTTCCCATATCGAATTTCTGTGTGAGGGTTCTGGAAGTCTTAATAGTCGTAATAGTTTCAATTTTAGCTATAGGATGCTTTTTCTATCTGAGCTCAAAATGGTAGGTCGTGTCGCGAGGTCCACCCGCGGACCCGCGGAAAGGCACCAAGAAAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

322

Amino Acids

37.19

Weight (kDa)

8.95

Isoelectric Point (pI)

62.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022710)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459831
rosa_laevigata RLG00000025057
rosa_samantha Rh3BG099600 Rh3DG101000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 248
AccB1I GGYRCC 1 cut(s) 948
AccI GTMKAC 1 cut(s) 163
AccII CGCG 3 cut(s) 920, 933, 941
AccIII TCCGGA 1 cut(s) 409
AciI CCGC 6 cut(s) 505, 724, 931, 933, 939, 941
AcoI YGGCCR 1 cut(s) 135
AcsI RAATTY 4 cut(s) 17, 432, 760, 818
AcuI CTGAAG 2 cut(s) 686, 786
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 3 cut(s) 354, 700, 945
AgsI TTSAA 2 cut(s) 287, 865
AjnI CCWGG 1 cut(s) 588
AluBI AGCT 4 cut(s) 745, 802, 873, 898
AluI AGCT 4 cut(s) 745, 802, 873, 898
Alw21I GWGCWC 2 cut(s) 609, 900
Alw26I GTCTC 1 cut(s) 657
Aor13HI TCCGGA 1 cut(s) 409
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 4 cut(s) 17, 432, 760, 818
AspS9I GGNCC 3 cut(s) 4, 924, 935
AvaII GGWCC 3 cut(s) 4, 924, 935
AxyI CCTNAGG 1 cut(s) 353
BalI TGGCCA 1 cut(s) 137
BanI GGYRCC 1 cut(s) 948
BanII GRGCYC 1 cut(s) 900
Bbv12I GWGCWC 2 cut(s) 609, 900
BccI CCATC 2 cut(s) 46, 146
BciT130I CCWGG 1 cut(s) 590
BciVI GTATCC 1 cut(s) 49
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 1 cut(s) 77
BfmI CTRYAG 2 cut(s) 681, 874
BfuI GTATCC 1 cut(s) 49
BisI GCNGC 1 cut(s) 505
BlsI GCNGC 1 cut(s) 506
Bme1390I CCNGG 1 cut(s) 590
Bme18I GGWCC 3 cut(s) 4, 924, 935
BmgT120I GGNCC 3 cut(s) 4, 924, 935
BmiI GGNNCC 3 cut(s) 582, 937, 950
BmrFI CCNGG 1 cut(s) 590
BmsI GCATC 4 cut(s) 285, 307, 328, 870
BoxI GACNNNNGTC 1 cut(s) 222
BpuEI CTTGAG 4 cut(s) 275, 529, 650, 761
BsaJI CCNNGG 3 cut(s) 7, 931, 939
BsaWI WCCGGW 1 cut(s) 409
Bsc4I CCNNNNNNNGG 3 cut(s) 354, 700, 945
Bse1I ACTGG 1 cut(s) 132
Bse21I CCTNAGG 1 cut(s) 353
Bse3DI GCAATG 1 cut(s) 277
BseAI TCCGGA 1 cut(s) 409
BseBI CCWGG 1 cut(s) 590
BseDI CCNNGG 3 cut(s) 7, 931, 939
BseGI GGATG 2 cut(s) 138, 885
BseLI CCNNNNNNNGG 3 cut(s) 354, 700, 945
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 3 cut(s) 159, 291, 885
BseNI ACTGG 1 cut(s) 132
BseYI CCCAGC 1 cut(s) 347
Bsh1236I CGCG 3 cut(s) 920, 933, 941
BshFI GGCC 1 cut(s) 137
BshNI GGYRCC 1 cut(s) 948
BsiHKAI GWGCWC 2 cut(s) 609, 900
BsiSI CCGG 1 cut(s) 410
BslFI GGGAC 4 cut(s) 165, 330, 563, 740
BslI CCNNNNNNNGG 3 cut(s) 354, 700, 945
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 4 cut(s) 165, 330, 563, 740
BsmI GAATGC 1 cut(s) 394
BsnI GGCC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 609, 900
Bsp13I TCCGGA 1 cut(s) 409
Bsp143I GATC 2 cut(s) 476, 597
Bsp19I CCATGG 1 cut(s) 7
Bsp68I TCGCGA 1 cut(s) 920
BspACI CCGC 6 cut(s) 505, 724, 931, 933, 939, 941
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 3 cut(s) 160, 292, 886
BspEI TCCGGA 1 cut(s) 409
BspFNI CGCG 3 cut(s) 920, 933, 941
BspLI GGNNCC 3 cut(s) 582, 937, 950
BspQI GCTCTTC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 948
BsrDI GCAATG 1 cut(s) 277
BsrI ACTGG 1 cut(s) 132
BssECI CCNNGG 3 cut(s) 7, 931, 939
BssMI GATC 2 cut(s) 476, 597
BssT1I CCWWGG 1 cut(s) 7
Bst2UI CCWGG 1 cut(s) 590
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 2 cut(s) 288, 660
BstC8I GCNNGC 2 cut(s) 605, 614
BstDEI CTNAG 5 cut(s) 45, 168, 300, 353, 894
BstDSI CCRYGG 3 cut(s) 7, 931, 939
BstF5I GGATG 2 cut(s) 138, 885
BstFNI CGCG 3 cut(s) 920, 933, 941
BstKTI GATC 2 cut(s) 479, 600
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 2 cut(s) 476, 597
BstMWI GCNNNNNNNGC 4 cut(s) 501, 533, 609, 613
BstNI CCWGG 1 cut(s) 590
BstNSI RCATGY 1 cut(s) 345
BstPAI GACNNNNGTC 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 588
BstSFI CTRYAG 2 cut(s) 681, 874
BstUI CGCG 3 cut(s) 920, 933, 941
Bsu36I CCTNAGG 1 cut(s) 353
BsuI GTATCC 1 cut(s) 49
BsuRI GGCC 1 cut(s) 137
BtgI CCRYGG 3 cut(s) 7, 931, 939
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 2 cut(s) 138, 885
BtsI GCAGTG 2 cut(s) 237, 607
BtsIMutI CAGTG 4 cut(s) 38, 125, 237, 607
BtuMI TCGCGA 1 cut(s) 920
Cac8I GCNNGC 2 cut(s) 605, 614
Cfr13I GGNCC 3 cut(s) 4, 924, 935
Cfr42I CCGCGG 2 cut(s) 934, 942
Csp6I GTAC 1 cut(s) 196
CviAII CATG 5 cut(s) 8, 82, 159, 342, 546
CviJI RGCY 9 cut(s) 137, 281, 351, 536, 581, 745, 802, 873, 898
CviKI_1 RGCY 9 cut(s) 137, 281, 351, 536, 581, 745, 802, 873, 898
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 5 cut(s) 45, 168, 300, 353, 894
DpnI GATC 2 cut(s) 478, 599
DpnII GATC 2 cut(s) 476, 597
EaeI YGGCCR 1 cut(s) 135
Eam1104I CTCTTC 2 cut(s) 288, 660
EarI CTCTTC 2 cut(s) 288, 660
Ecl136II GAGCTC 1 cut(s) 898
Eco130I CCWWGG 1 cut(s) 7
Eco24I GRGCYC 1 cut(s) 900
Eco47I GGWCC 3 cut(s) 4, 924, 935
Eco53kI GAGCTC 1 cut(s) 898
Eco57I CTGAAG 2 cut(s) 686, 786
Eco81I CCTNAGG 1 cut(s) 353
EcoICRI GAGCTC 1 cut(s) 898
EcoRI GAATTC 1 cut(s) 760
EcoRII CCWGG 1 cut(s) 588
EcoT14I CCWWGG 1 cut(s) 7
EcoT22I ATGCAT 1 cut(s) 343
EcoT38I GRGCYC 1 cut(s) 900
ErhI CCWWGG 1 cut(s) 7
FaeI CATG 5 cut(s) 11, 85, 162, 345, 549
FaqI GGGAC 4 cut(s) 165, 330, 563, 740
FatI CATG 5 cut(s) 7, 81, 158, 341, 545
FauI CCCGC 3 cut(s) 717, 938, 946
FblI GTMKAC 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 505
FokI GGATG 2 cut(s) 125, 892
FriOI GRGCYC 1 cut(s) 900
Fsp4HI GCNGC 1 cut(s) 505
FspBI CTAG 1 cut(s) 77
GluI GCNGC 1 cut(s) 505
GsaI CCCAGC 1 cut(s) 351
HaeIII GGCC 1 cut(s) 137
HapII CCGG 1 cut(s) 410
Hin1II CATG 5 cut(s) 11, 85, 162, 345, 549
HincII GTYRAC 1 cut(s) 164
HindII GTYRAC 1 cut(s) 164
HindIII AAGCTT 1 cut(s) 800
HinfI GANTC 4 cut(s) 122, 223, 650, 686
HpaII CCGG 1 cut(s) 410
Hpy166II GTNNAC 3 cut(s) 164, 515, 927
Hpy188I TCNGA 5 cut(s) 337, 597, 666, 766, 895
Hpy188III TCNNGA 6 cut(s) 292, 399, 410, 466, 837, 919
Hpy8I GTNNAC 3 cut(s) 164, 515, 927
Hpy99I CGWCG 1 cut(s) 30
HpyAV CCTTC 3 cut(s) 24, 761, 773
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4V TGCA 4 cut(s) 153, 341, 612, 732
HpyF10VI GCNNNNNNNGC 4 cut(s) 501, 533, 609, 613
HpyF3I CTNAG 5 cut(s) 45, 168, 300, 353, 894
Hsp92II CATG 5 cut(s) 11, 85, 162, 345, 549
Kpn2I TCCGGA 1 cut(s) 409
KspI CCGCGG 2 cut(s) 934, 942
Kzo9I GATC 2 cut(s) 476, 597
LguI GCTCTTC 1 cut(s) 288
LmnI GCTCC 1 cut(s) 586
LpnPI CCDG 9 cut(s) 113, 180, 312, 361, 384, 423, 575, 602, 822
LweI GCATC 4 cut(s) 285, 307, 328, 870
MaeI CTAG 1 cut(s) 77
MaeIII GTNAC 1 cut(s) 123
MalI GATC 2 cut(s) 478, 599
MboI GATC 2 cut(s) 476, 597
MboII GAAGA 6 cut(s) 61, 75, 120, 275, 326, 647
MfeI CAATTG 2 cut(s) 642, 961
MhlI GDGCHC 2 cut(s) 609, 900
MlsI TGGCCA 1 cut(s) 137
MluNI TGGCCA 1 cut(s) 137
MlyI GAGTC 4 cut(s) 131, 232, 659, 695
MnlI CCTC 6 cut(s) 5, 64, 549, 625, 823, 915
Mox20I TGGCCA 1 cut(s) 137
Mph1103I ATGCAT 1 cut(s) 343
MroI TCCGGA 1 cut(s) 409
MscI TGGCCA 1 cut(s) 137
MseI TTAA 3 cut(s) 522, 696, 846
Msp20I TGGCCA 1 cut(s) 137
MspA1I CMGCKG 2 cut(s) 933, 941
MspI CCGG 1 cut(s) 410
MspR9I CCNGG 1 cut(s) 590
MunI CAATTG 2 cut(s) 642, 961
Mva1269I GAATGC 1 cut(s) 394
MvaI CCWGG 1 cut(s) 590
MvnI CGCG 3 cut(s) 920, 933, 941
MwoI GCNNNNNNNGC 4 cut(s) 501, 533, 609, 613
NcoI CCATGG 1 cut(s) 7
NdeII GATC 2 cut(s) 476, 597
NlaIII CATG 5 cut(s) 11, 85, 162, 345, 549
NlaIV GGNNCC 3 cut(s) 582, 937, 950
NmuCI GTSAC 1 cut(s) 123
NruI TCGCGA 1 cut(s) 920
NsiI ATGCAT 1 cut(s) 343
NspI RCATGY 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 288
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PctI GAATGC 1 cut(s) 394
PkrI GCNGC 1 cut(s) 506
PleI GAGTC 4 cut(s) 130, 231, 658, 694
PpsI GAGTC 4 cut(s) 130, 231, 658, 694
PshAI GACNNNNGTC 1 cut(s) 222
PsiI TTATAA 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 900
Psp6I CCWGG 1 cut(s) 588
PspFI CCCAGC 1 cut(s) 347
PspGI CCWGG 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 582, 937, 950
PspPI GGNCC 3 cut(s) 4, 924, 935
RruI TCGCGA 1 cut(s) 920
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SacI GAGCTC 1 cut(s) 900
SacII CCGCGG 2 cut(s) 934, 942
SalI GTCGAC 1 cut(s) 162
SapI GCTCTTC 1 cut(s) 288
SaqAI TTAA 3 cut(s) 522, 696, 846
SatI GCNGC 1 cut(s) 505
Sau3AI GATC 2 cut(s) 476, 597
Sau96I GGNCC 3 cut(s) 4, 924, 935
SchI GAGTC 4 cut(s) 131, 232, 659, 695
ScrFI CCNGG 1 cut(s) 590
SduI GDGCHC 2 cut(s) 609, 900
SfaNI GCATC 4 cut(s) 285, 307, 328, 870
SfcI CTRYAG 2 cut(s) 681, 874
Sfr303I CCGCGG 2 cut(s) 934, 942
SgrBI CCGCGG 2 cut(s) 934, 942
SinI GGWCC 3 cut(s) 4, 924, 935
SmlI CTYRAG 4 cut(s) 290, 508, 629, 740
SmoI CTYRAG 4 cut(s) 290, 508, 629, 740
SsiI CCGC 6 cut(s) 505, 724, 931, 933, 939, 941
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 77
SstI GAGCTC 1 cut(s) 900
StyD4I CCNGG 1 cut(s) 588
StyI CCWWGG 1 cut(s) 7
TaaI ACNGT 1 cut(s) 444
TaqI TCGA 4 cut(s) 25, 163, 265, 816
TatI WGTACW 1 cut(s) 195
TauI GCSGC 1 cut(s) 507
Tru1I TTAA 3 cut(s) 522, 696, 846
Tru9I TTAA 3 cut(s) 522, 696, 846
TscAI CASTG 4 cut(s) 45, 132, 244, 614
TseFI GTSAC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 123
TspDTI ATGAA 3 cut(s) 475, 792, 804
TspGWI ACGGA 1 cut(s) 326
TspRI CASTG 4 cut(s) 45, 132, 244, 614
VpaK11BI GGWCC 3 cut(s) 4, 924, 935
XapI RAATTY 4 cut(s) 17, 432, 760, 818
XceI RCATGY 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 163
XspI CTAG 1 cut(s) 77
Zsp2I ATGCAT 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.