Rh3DG101000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0022710
Physical Location & Seq
Forward (+)
8064435 .. 8064956
522 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG101000.1

Sequence Viewer

Length: 522 bp
ATGGTACACATTAAGCCTCAATCCTTTGTTCTGGCAATCTCTTTATTTTCCAGACAACCTTATCCTTTATTTACTAGTAATGAAATTGAACACAGTCGACCTGAGAGTTTCGGTCCCTTTTACGATAAATATATAGAAAAATACCAAATTGACAAGAGTCGTTTCTCTATCACTGCTTTTATAAAGTTGATAGTCAATCGAAGCAATGGAAAGGCTCTTCAACTTAAGATGCCTGAGTTTTCTACGGAAGATGCGTTGAGATATGTTTCTGATGCATGTCCCAGCCTTAGGGTTCTGTGTTTGCCTGATGATTTAGTGATTTTCAAGCATTCCCGAATTATTCAGGAAGTAATTGGAAAGTGGAAATTTTTGGAACAGTTGTGTTTGGGTGGCAACATCAAGAAAATTATATCACTATTCATATTCTGCGAACATCGCCGCCGCTTGAGTGAACATTTTAAGGCATTGTTGGCTTTGGGGTCATGGGACAAGAGGGAAAATTTGGCTCCAATCCTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

20.13

Weight (kDa)

9.32

Isoelectric Point (pI)

64.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022710)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0459831
rosa_laevigata RLG00000025057
rosa_samantha Rh3BG099600 Rh3DG101000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 182
AccI GTMKAC 1 cut(s) 97
AciI CCGC 2 cut(s) 439, 442
AcsI RAATTY 2 cut(s) 365, 499
AfaI GTAC 1 cut(s) 6
AfiI CCNNNNNNNGG 1 cut(s) 288
AflII CTTAAG 1 cut(s) 224
AgsI TTSAA 3 cut(s) 89, 221, 325
AhlI ACTAGT 1 cut(s) 74
AjnI CCWGG 1 cut(s) 513
ApoI RAATTY 2 cut(s) 365, 499
AspS9I GGNCC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 113
AxyI CCTNAGG 1 cut(s) 287
BciT130I CCWGG 1 cut(s) 515
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 1 cut(s) 75
BfrI CTTAAG 1 cut(s) 224
BisI GCNGC 2 cut(s) 439, 442
BlsI GCNGC 2 cut(s) 440, 443
Bme1390I CCNGG 1 cut(s) 515
Bme18I GGWCC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 113
BmiI GGNNCC 2 cut(s) 115, 507
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 3 cut(s) 219, 241, 262
BoxI GACNNNNGTC 1 cut(s) 156
BpuEI CTTGAG 1 cut(s) 466
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse21I CCTNAGG 1 cut(s) 287
Bse3DI GCAATG 1 cut(s) 211
BseBI CCWGG 1 cut(s) 515
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMI GCAATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 93, 225
BseYI CCCAGC 1 cut(s) 281
BslFI GGGAC 3 cut(s) 99, 264, 500
BslI CCNNNNNNNGG 1 cut(s) 288
BsmFI GGGAC 3 cut(s) 99, 264, 500
BsmI GAATGC 1 cut(s) 328
BspACI CCGC 2 cut(s) 439, 442
BspCNI CTCAG 2 cut(s) 94, 226
BspLI GGNNCC 2 cut(s) 115, 507
BspQI GCTCTTC 1 cut(s) 222
BspTI CTTAAG 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 211
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 95, 378
Bst6I CTCTTC 1 cut(s) 222
BstAFI CTTAAG 1 cut(s) 224
BstDEI CTNAG 3 cut(s) 102, 234, 287
BstMWI GCNNNNNNNGC 2 cut(s) 435, 470
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 279
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 513
Bsu36I CCTNAGG 1 cut(s) 287
BtgZI GCGATG 1 cut(s) 419
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 113
Csp6I GTAC 1 cut(s) 5
CviAII CATG 2 cut(s) 276, 483
CviJI RGCY 5 cut(s) 16, 215, 285, 473, 506
CviKI_1 RGCY 5 cut(s) 16, 215, 285, 473, 506
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 3 cut(s) 102, 234, 287
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco47I GGWCC 1 cut(s) 113
Eco81I CCTNAGG 1 cut(s) 287
EcoRII CCWGG 1 cut(s) 513
EcoT22I ATGCAT 1 cut(s) 277
FaeI CATG 2 cut(s) 279, 486
FaiI YATR 8 cut(s) 132, 134, 182, 264, 277, 410, 422, 484
FaqI GGGAC 3 cut(s) 99, 264, 500
FatI CATG 2 cut(s) 275, 482
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 2 cut(s) 439, 442
Fsp4HI GCNGC 2 cut(s) 439, 442
FspBI CTAG 1 cut(s) 75
GluI GCNGC 2 cut(s) 439, 442
GsaI CCCAGC 1 cut(s) 285
Hin1II CATG 2 cut(s) 279, 486
HincII GTYRAC 1 cut(s) 98
HindII GTYRAC 1 cut(s) 98
HinfI GANTC 1 cut(s) 157
Hpy166II GTNNAC 3 cut(s) 7, 98, 452
Hpy188I TCNGA 1 cut(s) 271
Hpy188III TCNNGA 4 cut(s) 51, 333, 344, 400
Hpy8I GTNNAC 3 cut(s) 7, 98, 452
HpyCH4III ACNGT 2 cut(s) 95, 378
HpyCH4V TGCA 1 cut(s) 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 435, 470
HpyF3I CTNAG 3 cut(s) 102, 234, 287
Hsp92II CATG 2 cut(s) 279, 486
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 511
LpnPI CCDG 8 cut(s) 17, 64, 114, 246, 295, 318, 329, 500
LweI GCATC 3 cut(s) 219, 241, 262
MaeI CTAG 1 cut(s) 75
MboII GAAGA 2 cut(s) 209, 260
MluCI AATT 7 cut(s) 84, 147, 336, 351, 365, 405, 499
MlyI GAGTC 1 cut(s) 166
MnlI CCTC 2 cut(s) 27, 486
Mph1103I ATGCAT 1 cut(s) 277
MseI TTAA 3 cut(s) 12, 225, 459
MspCI CTTAAG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 328
MvaI CCWGG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 435, 470
NlaIII CATG 2 cut(s) 279, 486
NlaIV GGNNCC 2 cut(s) 115, 507
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 279
PciSI GCTCTTC 1 cut(s) 222
PcsI WCGNNNNNNNCGW 1 cut(s) 251
PctI GAATGC 1 cut(s) 328
PkrI GCNGC 2 cut(s) 440, 443
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PshAI GACNNNNGTC 1 cut(s) 156
PsiI TTATAA 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 513
PspFI CCCAGC 1 cut(s) 281
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 2 cut(s) 115, 507
PspPI GGNCC 1 cut(s) 113
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SalI GTCGAC 1 cut(s) 96
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 3 cut(s) 12, 225, 459
SatI GCNGC 2 cut(s) 439, 442
Sau96I GGNCC 1 cut(s) 113
SchI GAGTC 1 cut(s) 166
ScrFI CCNGG 1 cut(s) 515
SetI ASST 2 cut(s) 61, 103
SfaNI GCATC 3 cut(s) 219, 241, 262
SinI GGWCC 1 cut(s) 113
SmlI CTYRAG 2 cut(s) 224, 445
SmoI CTYRAG 2 cut(s) 224, 445
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 7 cut(s) 84, 147, 336, 351, 365, 405, 499
SsiI CCGC 2 cut(s) 439, 442
SspMI CTAG 1 cut(s) 75
StyD4I CCNGG 1 cut(s) 513
TaaI ACNGT 2 cut(s) 95, 378
TaqI TCGA 2 cut(s) 97, 199
TaqII GACCGA 1 cut(s) 101
TasI AATT 7 cut(s) 84, 147, 336, 351, 365, 405, 499
TauI GCSGC 2 cut(s) 441, 444
Tru1I TTAA 3 cut(s) 12, 225, 459
Tru9I TTAA 3 cut(s) 12, 225, 459
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 2 cut(s) 96, 409
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 178
Vha464I CTTAAG 1 cut(s) 224
VpaK11BI GGWCC 1 cut(s) 113
XapI RAATTY 2 cut(s) 365, 499
XceI RCATGY 1 cut(s) 279
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.