Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022703

Physical Location & Seq

Genomic Coordinates Reverse (-)

15562181 .. 15563081

Gene Structure 901 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTGTGCTCTACGTTTCAGGGGTCTTTATCGAGCTTATTCAGCAGATGCAAGGTGCGCAGCTAATAATTGATCTTACCGCAAAGAAACTTATCAGTTATGACTCAGAAAAGTGCTCGGAGAAGAATTTACTCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCTTGTGGACATCCCTGGAACAGCTTATCACAAATGTTTACAGGGTAGGAAAAATGCAATGAGAATGTTGGTAAACCTGCTACAGGAAAGAAGAGAAAAGCCGCGAAAGCAGCCTATAGATTTTGTTGATCACGTGCTTGAAGAACTCAAGAAAGAGGAAACGATGTTAACAGAAGAAATTTTTTTGGGTTTAATGTTTGTACTGCTTTTCGTGAGCTTTGAAACAACTTCCCTAGCTCTAACATTAGCCATCAAGTTTCTTTCAGACCATCCTGCAGTGCTAAAGAAATTAACAATCTGTACAAACTCTCTAAGCATTTCAAACCATACTAATTGCTATAGCTCGCTGAAGAGCATGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

178

Amino Acids

20.2

Weight (kDa)

8.31

Isoelectric Point (pI)

31.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	58 - 156	3.5e-10	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022703)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0469691 RchiOBHm_Chr7g0182441
rosa_samantha	Rh3BG177100 Rh7DG049900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	258
AccII	CGCG	1 cut(s)	277
AciI	CCGC	2 cut(s)	81, 275
AcsI	RAATTY	2 cut(s)	127, 351
AcvI	CACGTG	1 cut(s)	307
AfaI	GTAC	2 cut(s)	375, 475
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	3 cut(s)	314, 395, 495
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	6 cut(s)	37, 64, 197, 390, 410, 516
AluI	AGCT	6 cut(s)	37, 64, 197, 390, 410, 516
Alw21I	GWGCWC	2 cut(s)	12, 119
ApeKI	GCWGC	2 cut(s)	61, 283
ApoI	RAATTY	2 cut(s)	127, 351
AspLEI	GCGC	1 cut(s)	61
BbrPI	CACGTG	1 cut(s)	307
Bbv12I	GWGCWC	2 cut(s)	12, 119
BbvI	GCAGC	2 cut(s)	73, 295
BccI	CCATC	2 cut(s)	431, 450
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	301
BfaI	CTAG	1 cut(s)	407
BfmI	CTRYAG	4 cut(s)	254, 288, 447, 511
BfuAI	ACCTGC	1 cut(s)	258
BisI	GCNGC	3 cut(s)	62, 275, 284
BlsI	GCNGC	3 cut(s)	63, 276, 285
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	305
BsaAI	YACGTR	1 cut(s)	307
BsaJI	CCNNGG	1 cut(s)	187
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	237
BseBI	CCWGG	1 cut(s)	189
BseDI	CCNNGG	1 cut(s)	187
BseGI	GGATG	2 cut(s)	183, 442
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	1 cut(s)	120
BseXI	GCAGC	2 cut(s)	73, 295
Bsh1236I	CGCG	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	12, 119
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmI	GAATGC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	12, 119
Bsp1407I	TGTACA	1 cut(s)	473
Bsp143I	GATC	2 cut(s)	73, 301
BspACI	CCGC	2 cut(s)	81, 275
BspCNI	CTCAG	1 cut(s)	119
BspFNI	CGCG	1 cut(s)	277
BspMAI	CTGCAG	1 cut(s)	451
BspMI	ACCTGC	1 cut(s)	258
BspQI	GCTCTTC	1 cut(s)	518
BsrDI	GCAATG	1 cut(s)	237
BsrGI	TGTACA	1 cut(s)	473
BssECI	CCNNGG	1 cut(s)	187
BssMI	GATC	2 cut(s)	73, 301
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	259, 518
BstAUI	TGTACA	1 cut(s)	473
BstBAI	YACGTR	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	518
BstDEI	CTNAG	2 cut(s)	106, 485
BstENI	CCTNNNNNAGG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	183, 442
BstFNI	CGCG	1 cut(s)	277
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	2 cut(s)	76, 304
BstMBI	GATC	2 cut(s)	73, 301
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 58, 280, 283
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	4 cut(s)	254, 288, 447, 511
BstUI	CGCG	1 cut(s)	277
BstV1I	GCAGC	2 cut(s)	73, 295
BtsCI	GGATG	2 cut(s)	183, 442
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
BveI	ACCTGC	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	518
CfoI	GCGC	1 cut(s)	61
Csp6I	GTAC	2 cut(s)	374, 474
CviAII	CATG	1 cut(s)	529
CviJI	RGCY	9 cut(s)	37, 64, 197, 274, 286, 390, 410, 422, 516
CviKI_1	RGCY	9 cut(s)	37, 64, 197, 274, 286, 390, 410, 422, 516
CviQI	GTAC	2 cut(s)	374, 474
DdeI	CTNAG	2 cut(s)	106, 485
DpnI	GATC	2 cut(s)	75, 303
DpnII	GATC	2 cut(s)	73, 301
Eam1104I	CTCTTC	2 cut(s)	259, 518
EarI	CTCTTC	2 cut(s)	259, 518
Eco72I	CACGTG	1 cut(s)	307
EcoNI	CCTNNNNNAGG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	187
FaeI	CATG	1 cut(s)	532
FaiI	YATR	6 cut(s)	102, 155, 290, 501, 513, 530
FatI	CATG	1 cut(s)	528
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	62, 275, 284
FokI	GGATG	2 cut(s)	170, 429
Fsp4HI	GCNGC	3 cut(s)	62, 275, 284
FspBI	CTAG	1 cut(s)	407
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	62, 275, 284
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	532
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HincII	GTYRAC	1 cut(s)	342
HindII	GTYRAC	1 cut(s)	342
HinfI	GANTC	1 cut(s)	104
HpaI	GTTAAC	1 cut(s)	342
Hpy166II	GTNNAC	4 cut(s)	181, 212, 247, 342
Hpy188I	TCNGA	3 cut(s)	109, 121, 439
Hpy188III	TCNNGA	2 cut(s)	322, 385
Hpy8I	GTNNAC	4 cut(s)	181, 212, 247, 342
HpyAV	CCTTC	1 cut(s)	181
HpyCH4IV	ACGT	2 cut(s)	15, 306
HpyCH4V	TGCA	4 cut(s)	52, 149, 230, 449
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 58, 280, 283
HpyF3I	CTNAG	2 cut(s)	106, 485
HpySE526I	ACGT	2 cut(s)	15, 306
Hsp92II	CATG	1 cut(s)	532
HspAI	GCGC	1 cut(s)	59
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	73, 301
LguI	GCTCTTC	1 cut(s)	518
LpnPI	CCDG	7 cut(s)	6, 174, 200, 201, 242, 263, 459
Lsp1109I	GCAGC	2 cut(s)	73, 295
LweI	GCATC	1 cut(s)	39
MaeI	CTAG	1 cut(s)	407
MaeII	ACGT	2 cut(s)	15, 306
MalI	GATC	2 cut(s)	75, 303
MboI	GATC	2 cut(s)	73, 301
MboII	GAAGA	5 cut(s)	136, 276, 326, 359, 535
MhlI	GDGCHC	2 cut(s)	12, 119
MluCI	AATT	5 cut(s)	69, 127, 351, 461, 505
MlyI	GAGTC	1 cut(s)	98
MnlI	CCTC	1 cut(s)	322
MseI	TTAA	3 cut(s)	341, 365, 464
MspR9I	CCNGG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	277
MwoI	GCNNNNNNNGC	4 cut(s)	43, 58, 280, 283
NdeII	GATC	2 cut(s)	73, 301
NlaIII	CATG	1 cut(s)	532
NsbI	TGCGCA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	518
PctI	GAATGC	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	63, 276, 285
PleI	GAGTC	1 cut(s)	98
PmaCI	CACGTG	1 cut(s)	307
PmlI	CACGTG	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	98
Ppu21I	YACGTR	1 cut(s)	307
Psp6I	CCWGG	1 cut(s)	187
PspCI	CACGTG	1 cut(s)	307
PspGI	CCWGG	1 cut(s)	187
PstI	CTGCAG	1 cut(s)	451
RsaI	GTAC	2 cut(s)	375, 475
RsaNI	GTAC	2 cut(s)	374, 474
SapI	GCTCTTC	1 cut(s)	518
SaqAI	TTAA	3 cut(s)	341, 365, 464
SatI	GCNGC	3 cut(s)	62, 275, 284
Sau3AI	GATC	2 cut(s)	73, 301
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	12, 119
SfaNI	GCATC	1 cut(s)	39
SfcI	CTRYAG	4 cut(s)	254, 288, 447, 511
SmlI	CTYRAG	1 cut(s)	320
SmoI	CTYRAG	1 cut(s)	320
Sse9I	AATT	5 cut(s)	69, 127, 351, 461, 505
SsiI	CCGC	2 cut(s)	81, 275
SspMI	CTAG	1 cut(s)	407
StyD4I	CCNGG	1 cut(s)	187
TaiI	ACGT	2 cut(s)	18, 309
TaqI	TCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	69, 127, 351, 461, 505
TatI	WGTACW	2 cut(s)	373, 473
TauI	GCSGC	1 cut(s)	277
Tru1I	TTAA	3 cut(s)	341, 365, 464
Tru9I	TTAA	3 cut(s)	341, 365, 464
TscAI	CASTG	1 cut(s)	456
TseI	GCWGC	2 cut(s)	61, 283
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	456
XagI	CCTNNNNNAGG	1 cut(s)	254
XapI	RAATTY	2 cut(s)	127, 351
XspI	CTAG	1 cut(s)	407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.