Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0022703

Physical Location & Seq

Genomic Coordinates Reverse (-)

15363500 .. 15399329

Gene Structure 35830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG177100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGGAGGTGACACTTATGACTCAGAAAAGTGCTCGGAGAAGAATTTACTCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCTTGTGGACATCCCTGGAACAGCTTATCACAAATGTTTACAGGGTAGGAAAAATGCAATGAGAATGTTGGTAAACCTGCTACAGGAAAGAAGAGAAAAGCCGCGAAAGCAGCCTATAGATTTTGTTGATCACGTGCTTGAAGAACTCAAGAAAGAGGAAACGATGTTAACAGAAGAAATTTTTTTGGGTTTAATGTTTGTACTGCTTTTCATCATCAATGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGAAGGTTGGGCAGTAATGGTTTGTGGAAGTTTAACACATTGGGGTTGCTTCCTACACATGCATCCGACTGGGTTTCATCCTGACCCCCTGCTCAAATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

164

Amino Acids

18.97

Weight (kDa)

7.74

Isoelectric Point (pI)

36.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	97 - 159	6e-07	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022703)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0469691 RchiOBHm_Chr7g0182441
rosa_samantha	Rh3BG177100 Rh7DG049900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	174
AccII	CGCG	1 cut(s)	193
AciI	CCGC	1 cut(s)	191
AcsI	RAATTY	2 cut(s)	43, 267
AcvI	CACGTG	1 cut(s)	223
AfaI	GTAC	1 cut(s)	291
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	103
AluBI	AGCT	2 cut(s)	113, 341
AluI	AGCT	2 cut(s)	113, 341
Alw21I	GWGCWC	1 cut(s)	35
ApeKI	GCWGC	1 cut(s)	199
ApoI	RAATTY	2 cut(s)	43, 267
AsuHPI	GGTGA	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	223
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	105
BclI	TGATCA	1 cut(s)	217
BfmI	CTRYAG	2 cut(s)	170, 204
BfuAI	ACCTGC	1 cut(s)	174
BisI	GCNGC	2 cut(s)	191, 200
BlsI	GCNGC	2 cut(s)	192, 201
Bme1390I	CCNGG	1 cut(s)	105
BmrFI	CCNGG	1 cut(s)	105
BmrI	ACTGGG	1 cut(s)	471
BmsI	GCATC	1 cut(s)	463
BmuI	ACTGGG	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	103
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	2 cut(s)	327, 466
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	105
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	3 cut(s)	99, 454, 469
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	2 cut(s)	327, 466
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmI	GAATGC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	1 cut(s)	191
BspCNI	CTCAG	1 cut(s)	35
BspFNI	CGCG	1 cut(s)	193
BspMI	ACCTGC	1 cut(s)	174
BsrDI	GCAATG	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	327, 466
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	316, 372
Bst6I	CTCTTC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	22
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	3 cut(s)	99, 454, 469
BstFNI	CGCG	1 cut(s)	193
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	2 cut(s)	196, 199
BstNI	CCWGG	1 cut(s)	105
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	103
BstSFI	CTRYAG	2 cut(s)	170, 204
BstUI	CGCG	1 cut(s)	193
BstV1I	GCAGC	1 cut(s)	211
BstXI	CCANNNNNNTGG	1 cut(s)	399
BtsCI	GGATG	3 cut(s)	99, 454, 469
BveI	ACCTGC	1 cut(s)	174
Csp6I	GTAC	1 cut(s)	290
CviAII	CATG	1 cut(s)	451
CviJI	RGCY	4 cut(s)	113, 190, 202, 341
CviKI_1	RGCY	4 cut(s)	113, 190, 202, 341
CviQI	GTAC	1 cut(s)	290
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
DraI	TTTAAA	1 cut(s)	376
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	223
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	456
FaeI	CATG	1 cut(s)	454
FaiI	YATR	6 cut(s)	18, 71, 206, 332, 384, 452
FatI	CATG	1 cut(s)	450
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	191, 200
FokI	GGATG	3 cut(s)	86, 441, 456
Fsp4HI	GCNGC	2 cut(s)	191, 200
GluI	GCNGC	2 cut(s)	191, 200
Hin1II	CATG	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	258
HindII	GTYRAC	1 cut(s)	258
HinfI	GANTC	1 cut(s)	20
HpaI	GTTAAC	1 cut(s)	258
HphI	GGTGA	1 cut(s)	20
Hpy166II	GTNNAC	4 cut(s)	97, 128, 163, 258
Hpy188I	TCNGA	3 cut(s)	25, 37, 459
Hpy188III	TCNNGA	3 cut(s)	238, 392, 473
Hpy8I	GTNNAC	4 cut(s)	97, 128, 163, 258
HpyAV	CCTTC	2 cut(s)	97, 389
HpyCH4III	ACNGT	2 cut(s)	316, 372
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	3 cut(s)	65, 146, 454
HpyF10VI	GCNNNNNNNGC	2 cut(s)	196, 199
HpyF3I	CTNAG	1 cut(s)	22
HpySE526I	ACGT	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	454
Ksp22I	TGATCA	1 cut(s)	217
KspAI	GTTAAC	1 cut(s)	258
Kzo9I	GATC	1 cut(s)	217
Lsp1109I	GCAGC	1 cut(s)	211
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	4 cut(s)	52, 192, 242, 275
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	43, 267
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	1 cut(s)	482
MnlI	CCTC	1 cut(s)	238
Mph1103I	ATGCAT	1 cut(s)	456
MseI	TTAA	4 cut(s)	257, 281, 375, 425
MspR9I	CCNGG	1 cut(s)	105
Mva1269I	GAATGC	1 cut(s)	65
MvaI	CCWGG	1 cut(s)	105
MvnI	CGCG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	196, 199
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	454
NmuCI	GTSAC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	456
NspI	RCATGY	1 cut(s)	454
PctI	GAATGC	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	192, 201
PleI	GAGTC	1 cut(s)	14
PmaCI	CACGTG	1 cut(s)	223
PmlI	CACGTG	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	14
Ppu21I	YACGTR	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	103
PspCI	CACGTG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	103
RsaI	GTAC	1 cut(s)	291
RsaNI	GTAC	1 cut(s)	290
SaqAI	TTAA	4 cut(s)	257, 281, 375, 425
SatI	GCNGC	2 cut(s)	191, 200
Sau3AI	GATC	1 cut(s)	217
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	6 cut(s)	10, 115, 168, 225, 343, 400
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	2 cut(s)	170, 204
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	43, 267
SsiI	CCGC	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	103
TaaI	ACNGT	2 cut(s)	316, 372
TaiI	ACGT	1 cut(s)	225
TasI	AATT	2 cut(s)	43, 267
TatI	WGTACW	1 cut(s)	289
TauI	GCSGC	1 cut(s)	193
Tru1I	TTAA	4 cut(s)	257, 281, 375, 425
Tru9I	TTAA	4 cut(s)	257, 281, 375, 425
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	1 cut(s)	199
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	4 cut(s)	58, 289, 324, 458
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	43, 267
XceI	RCATGY	1 cut(s)	454
Zsp2I	ATGCAT	1 cut(s)	456

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.