Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0022703

Physical Location & Seq

Genomic Coordinates Forward (+)

3860500 .. 3866368

Gene Structure 5869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG049900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGGTTTCTTTGATGCCTCTCTTTATGGTCCTTTTCATGCTGGGGATAATTTGTTGATTGTCCAATGGTCATGTGAGGACACAATAGAATTCAAAGATGCATCTGCAAGTCTGATATTTGATCTTACCGCAAAGAAACTTATCAGTTATGACTCAGAAAAGTGCTCGGAGAAGAATTTACGCAAAAACTTCGTTGCATTCATACAAGGATTGATTTCCTTCCTTGTGGACATCCCTGGAACAGCTTATCACAAATGTTTACAGGGTAGGAAAAATGCAATGAGAATGTTGGTAAACCTGCTACAGGAAAGACGAGAAAAGCCGCGAAAGCAGCCTATAGATTTTTTTGATCACGTGCTTGAAGAACTCAAGAAAGAGGAAACGATGTTAACAGAAGAAATTTTTTTGGGTTTAATGTTTGTACTGCTTTTCGCGAGCTTTGAAACAACTTCCCTAGCTAGTTCAGACCATCCTGCATTGCTAAAGAAATTAACGGAAGAGCATGGGATGATCATAAAGCAAAGGGAAAATGCTGATGCTGGACTTACATGGAAAGAATACAAATCAATGACATTCACATTTCAGATCATCAACGAAACAGTTAGACTGGCAAATATAGTTCCAGCTATCTTTCGCAAAGCAATAAGAGAGATACAGTTTAAAGGACATACCATTCCAGAAGGTTGGGCAGTAATGGTTTGTGGAAGTTTAACACATTGGGGTTGCTTCCTACACATGCATCAGACTGGGTTTCATCCTGACCCCTTGCTCAGATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0006694 GO:0007275 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0010268 GO:0010817 GO:0016125 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0016491 GO:0032501 GO:0032502 GO:0042445 GO:0042446 GO:0042592 GO:0044238 GO:0048856 GO:0048878 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

p450

Protein Analysis

259

Amino Acids

29.84

Weight (kDa)

6.56

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	76 - 239	1.2e-21	Cytochrome P450

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022703)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0469691 RchiOBHm_Chr7g0182441
rosa_samantha	Rh3BG177100 Rh7DG049900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	306
AccII	CGCG	2 cut(s)	325, 434
AciI	CCGC	2 cut(s)	129, 323
AcsI	RAATTY	3 cut(s)	89, 175, 399
AcvI	CACGTG	1 cut(s)	355
AfaI	GTAC	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	304
AgsI	TTSAA	3 cut(s)	94, 362, 443
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	4 cut(s)	245, 438, 458, 626
AluI	AGCT	4 cut(s)	245, 438, 458, 626
Alw21I	GWGCWC	1 cut(s)	167
ApeKI	GCWGC	1 cut(s)	331
ApoI	RAATTY	3 cut(s)	89, 175, 399
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BbrPI	CACGTG	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	343
BccI	CCATC	2 cut(s)	477, 768
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BciT130I	CCWGG	1 cut(s)	237
BclI	TGATCA	2 cut(s)	349, 510
BfaI	CTAG	2 cut(s)	455, 459
BfmI	CTRYAG	2 cut(s)	302, 336
BfuAI	ACCTGC	1 cut(s)	306
BisI	GCNGC	2 cut(s)	323, 332
BlsI	GCNGC	2 cut(s)	324, 333
Bme1390I	CCNGG	1 cut(s)	237
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	237
BmrI	ACTGGG	1 cut(s)	756
BmsI	GCATC	5 cut(s)	4, 88, 110, 526, 748
BmuI	ACTGGG	1 cut(s)	756
BpuEI	CTTGAG	1 cut(s)	353
BsaAI	YACGTR	1 cut(s)	355
BsaJI	CCNNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	304
Bse1I	ACTGG	2 cut(s)	612, 751
Bse3DI	GCAATG	2 cut(s)	285, 476
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	4 cut(s)	231, 469, 513, 754
BseLI	CCNNNNNNNGG	1 cut(s)	304
BseMI	GCAATG	2 cut(s)	285, 476
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	612, 751
BseXI	GCAGC	1 cut(s)	343
BseYI	CCCAGC	1 cut(s)	41
Bsh1236I	CGCG	2 cut(s)	325, 434
BsiHKAI	GWGCWC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	304
BsmI	GAATGC	1 cut(s)	197
Bsp1286I	GDGCHC	1 cut(s)	167
Bsp143I	GATC	4 cut(s)	121, 349, 510, 585
Bsp68I	TCGCGA	1 cut(s)	434
BspACI	CCGC	2 cut(s)	129, 323
BspCNI	CTCAG	1 cut(s)	167
BspFNI	CGCG	2 cut(s)	325, 434
BspMI	ACCTGC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	285, 476
BsrI	ACTGG	2 cut(s)	612, 751
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	4 cut(s)	121, 349, 510, 585
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	2 cut(s)	601, 657
Bst6I	CTCTTC	1 cut(s)	492
BstBAI	YACGTR	1 cut(s)	355
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	154, 770
BstENI	CCTNNNNNAGG	1 cut(s)	302
BstF5I	GGATG	4 cut(s)	231, 469, 513, 754
BstFNI	CGCG	2 cut(s)	325, 434
BstKTI	GATC	4 cut(s)	124, 352, 513, 588
BstMBI	GATC	4 cut(s)	121, 349, 510, 585
BstMWI	GCNNNNNNNGC	2 cut(s)	328, 331
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	739
BstSCI	CCNGG	1 cut(s)	235
BstSFI	CTRYAG	2 cut(s)	302, 336
BstUI	CGCG	2 cut(s)	325, 434
BstV1I	GCAGC	1 cut(s)	343
BstXI	CCANNNNNNTGG	1 cut(s)	684
BtsCI	GGATG	4 cut(s)	231, 469, 513, 754
BtuMI	TCGCGA	1 cut(s)	434
BveI	ACCTGC	1 cut(s)	306
Cac8I	GCNNGC	1 cut(s)	436
Cfr13I	GGNCC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	5 cut(s)	38, 72, 503, 549, 736
CviJI	RGCY	6 cut(s)	245, 322, 334, 438, 458, 626
CviKI_1	RGCY	6 cut(s)	245, 322, 334, 438, 458, 626
CviQI	GTAC	1 cut(s)	422
DdeI	CTNAG	2 cut(s)	154, 770
DpnI	GATC	4 cut(s)	123, 351, 512, 587
DpnII	GATC	4 cut(s)	121, 349, 510, 585
DraI	TTTAAA	1 cut(s)	661
Eam1104I	CTCTTC	1 cut(s)	492
EarI	CTCTTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	29
Eco72I	CACGTG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	302
EcoRI	GAATTC	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	235
EcoT22I	ATGCAT	2 cut(s)	103, 741
FaeI	CATG	5 cut(s)	41, 75, 506, 552, 739
FatI	CATG	5 cut(s)	37, 71, 502, 548, 735
FbaI	TGATCA	2 cut(s)	349, 510
Fnu4HI	GCNGC	2 cut(s)	323, 332
FokI	GGATG	4 cut(s)	218, 456, 520, 741
Fsp4HI	GCNGC	2 cut(s)	323, 332
FspBI	CTAG	2 cut(s)	455, 459
GluI	GCNGC	2 cut(s)	323, 332
GsaI	CCCAGC	1 cut(s)	45
Hin1II	CATG	5 cut(s)	41, 75, 506, 552, 739
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	152
HpaI	GTTAAC	1 cut(s)	390
Hpy166II	GTNNAC	4 cut(s)	229, 260, 295, 390
Hpy188I	TCNGA	7 cut(s)	114, 157, 169, 466, 585, 744, 773
Hpy188III	TCNNGA	4 cut(s)	370, 433, 677, 758
Hpy8I	GTNNAC	4 cut(s)	229, 260, 295, 390
HpyAV	CCTTC	2 cut(s)	229, 674
HpyCH4III	ACNGT	2 cut(s)	601, 657
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	6 cut(s)	101, 107, 197, 278, 476, 739
HpyF10VI	GCNNNNNNNGC	2 cut(s)	328, 331
HpyF3I	CTNAG	2 cut(s)	154, 770
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	5 cut(s)	41, 75, 506, 552, 739
Ksp22I	TGATCA	2 cut(s)	349, 510
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	4 cut(s)	121, 349, 510, 585
LguI	GCTCTTC	1 cut(s)	492
Lsp1109I	GCAGC	1 cut(s)	343
LweI	GCATC	5 cut(s)	4, 88, 110, 526, 748
MaeI	CTAG	2 cut(s)	455, 459
MaeII	ACGT	1 cut(s)	354
MalI	GATC	4 cut(s)	123, 351, 512, 587
MboI	GATC	4 cut(s)	121, 349, 510, 585
MboII	GAAGA	4 cut(s)	184, 374, 407, 509
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	5 cut(s)	49, 89, 175, 399, 488
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	28, 70, 370
Mph1103I	ATGCAT	2 cut(s)	103, 741
MseI	TTAA	5 cut(s)	389, 413, 491, 660, 710
MspR9I	CCNGG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	2 cut(s)	325, 434
MwoI	GCNNNNNNNGC	2 cut(s)	328, 331
NdeII	GATC	4 cut(s)	121, 349, 510, 585
NlaIII	CATG	5 cut(s)	41, 75, 506, 552, 739
NruI	TCGCGA	1 cut(s)	434
NsiI	ATGCAT	2 cut(s)	103, 741
NspI	RCATGY	1 cut(s)	739
PciSI	GCTCTTC	1 cut(s)	492
PctI	GAATGC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	324, 333
PleI	GAGTC	1 cut(s)	146
PmaCI	CACGTG	1 cut(s)	355
PmlI	CACGTG	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	355
Psp6I	CCWGG	1 cut(s)	235
PspCI	CACGTG	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	29
RruI	TCGCGA	1 cut(s)	434
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	5 cut(s)	389, 413, 491, 660, 710
SatI	GCNGC	2 cut(s)	323, 332
Sau3AI	GATC	4 cut(s)	121, 349, 510, 585
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	7 cut(s)	247, 300, 357, 440, 460, 628, 685
SfaNI	GCATC	5 cut(s)	4, 88, 110, 526, 748
SfcI	CTRYAG	2 cut(s)	302, 336
SinI	GGWCC	1 cut(s)	29
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	5 cut(s)	49, 89, 175, 399, 488
SsiI	CCGC	2 cut(s)	129, 323
SspMI	CTAG	2 cut(s)	455, 459
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	2 cut(s)	601, 657
TaiI	ACGT	1 cut(s)	357
TasI	AATT	5 cut(s)	49, 89, 175, 399, 488
TatI	WGTACW	1 cut(s)	421
TauI	GCSGC	1 cut(s)	325
Tru1I	TTAA	5 cut(s)	389, 413, 491, 660, 710
Tru9I	TTAA	5 cut(s)	389, 413, 491, 660, 710
TseI	GCWGC	1 cut(s)	331
TspDTI	ATGAA	3 cut(s)	26, 190, 743
TspGWI	ACGGA	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	302
XapI	RAATTY	3 cut(s)	89, 175, 399
XceI	RCATGY	1 cut(s)	739
XspI	CTAG	2 cut(s)	455, 459
Zsp2I	ATGCAT	2 cut(s)	103, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.