Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022704

Physical Location & Seq

Genomic Coordinates Forward (+)

37273015 .. 37273895

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGAGCTGGACCCTATGATTTTCTGTGGACAGCTTCCAAAAGATGATTTTGTTGTGGTCACGTACAGCAGTCGCATGGTTGGGCAATGGGAAGCCAAAGTTCTACTAAAACCCCTGAGGTCATTGCCTTCTGTTGGAAGTGGCGCCTACCCGACAAATCATATTTGGATCTTCTCAACAAGGAAAGCAGTGACATCCGTTTTTGCTGCCTTTGATGCCCTTTGTGAAGAAGGGACTGCAACAACTGTATGCAGAGCTCTTGATGAAGTTGCAGGTATTGCAAAATCGAAAGCATCATTGTGGACAACGACGGTGGCTGTGCTATCTGGTCACAAAGCCTATTACTTGAGGCAAAAGAAAATATGGGCAAGAGATGAAGAGGGTGATCTCGATAAAGAGTCTCTACCATCAAGCCCCACTGCCTCAGCTGCAGACACCATTCCTAAGGCTGAGGGCCTGATTGTATTCTTTCCTGGACTACCTGTTTCTGCCACGTCAGCATTTGATGTTGAACTACTCAACTGTTTTGGTTCACTTGTCAAGATGCCACCGCTGAAATCTAATAGGAATTCATTACTTAATATTGTGAAATCAACTCGTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

201

Amino Acids

21.86

Weight (kDa)

7.63

Isoelectric Point (pI)

35.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0490601
rosa_laevigata	RLG00000022880
rosa_samantha	Rh3CG327700 Rh3DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	143
AciI	CCGC	1 cut(s)	551
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	568
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	512
AjiI	CACGTC	1 cut(s)	495
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	4 cut(s)	7, 34, 257, 428
AluI	AGCT	4 cut(s)	7, 34, 257, 428
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	405
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	2 cut(s)	206, 428
ApoI	RAATTY	1 cut(s)	568
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	2 cut(s)	10, 454
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	10
AxyI	CCTNAGG	2 cut(s)	116, 444
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	259
BauI	CACGAG	1 cut(s)	597
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	2 cut(s)	424, 450
BbvI	GCAGC	2 cut(s)	193, 415
BccI	CCATC	1 cut(s)	415
BciT130I	CCWGG	1 cut(s)	474
BcoDI	GTCTC	1 cut(s)	405
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	2 cut(s)	207, 429
BlsI	GCNGC	2 cut(s)	208, 430
Bme1390I	CCNGG	1 cut(s)	474
Bme18I	GGWCC	1 cut(s)	10
BmgBI	CACGTC	1 cut(s)	495
BmgT120I	GGNCC	2 cut(s)	10, 454
BmiI	GGNNCC	2 cut(s)	12, 145
BmrFI	CCNGG	1 cut(s)	474
BmsI	GCATC	3 cut(s)	205, 302, 534
Bpu10I	CCTNAGC	2 cut(s)	424, 450
BpuEI	CTTGAG	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse21I	CCTNAGG	2 cut(s)	116, 444
Bse3DI	GCAATG	2 cut(s)	92, 122
BseBI	CCWGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	2 cut(s)	92, 122
BseMII	CTCAG	3 cut(s)	107, 438, 441
BseXI	GCAGC	2 cut(s)	193, 415
BshFI	GGCC	1 cut(s)	456
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	405
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	168, 385
BspACI	CCGC	1 cut(s)	551
BspANI	GGCC	1 cut(s)	456
BspCNI	CTCAG	3 cut(s)	108, 437, 442
BspLI	GGNNCC	2 cut(s)	12, 145
BspMAI	CTGCAG	1 cut(s)	433
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	92, 122
BssMI	GATC	2 cut(s)	168, 385
BssNI	GRCGYC	1 cut(s)	144
BssSI	CACGAG	1 cut(s)	597
Bst2BI	CACGAG	1 cut(s)	597
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	247, 313, 524
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	63
BstDEI	CTNAG	4 cut(s)	116, 424, 444, 450
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	171, 388
BstMAI	GTCTC	1 cut(s)	405
BstMBI	GATC	2 cut(s)	168, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 278, 428, 497
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	193, 415
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	2 cut(s)	116, 444
BsuRI	GGCC	1 cut(s)	456
BtrI	CACGTC	1 cut(s)	495
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	2 cut(s)	195, 417
BtsIMutI	CAGTG	2 cut(s)	195, 417
BveI	ACCTGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	10, 454
Csp6I	GTAC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	1 cut(s)	76
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	4 cut(s)	116, 424, 444, 450
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	2 cut(s)	170, 387
DpnII	GATC	2 cut(s)	168, 385
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	257
Eco81I	CCTNAGG	2 cut(s)	116, 444
EcoICRI	GAGCTC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	568
EcoRII	CCWGG	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaeI	CATG	1 cut(s)	79
FaiI	YATR	5 cut(s)	17, 77, 162, 250, 364
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	75
Fnu4HI	GCNGC	2 cut(s)	207, 429
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	207, 429
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	207, 429
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	456
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	79
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	398
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	3 cut(s)	29, 303, 533
Hpy188III	TCNNGA	4 cut(s)	260, 389, 541, 599
Hpy8I	GTNNAC	3 cut(s)	29, 303, 533
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	138, 224
HpyCH4III	ACNGT	3 cut(s)	247, 313, 524
HpyCH4IV	ACGT	2 cut(s)	62, 494
HpyCH4V	TGCA	5 cut(s)	239, 252, 272, 281, 431
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 278, 428, 497
HpyF3I	CTNAG	4 cut(s)	116, 424, 444, 450
HpySE526I	ACGT	2 cut(s)	62, 494
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	79
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	168, 385
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	7 cut(s)	128, 258, 312, 459, 470, 486, 495
Lsp1109I	GCAGC	2 cut(s)	193, 415
LweI	GCATC	3 cut(s)	205, 302, 534
MaeII	ACGT	2 cut(s)	62, 494
MaeIII	GTNAC	3 cut(s)	58, 190, 329
MalI	GATC	2 cut(s)	170, 387
MboI	GATC	2 cut(s)	168, 385
MboII	GAAGA	3 cut(s)	163, 239, 389
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	1 cut(s)	568
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	5 cut(s)	111, 342, 373, 433, 445
MseI	TTAA	1 cut(s)	579
MslI	CAYNNNNRTG	1 cut(s)	298
MspA1I	CMGCKG	2 cut(s)	428, 553
MspR9I	CCNGG	1 cut(s)	474
MvaI	CCWGG	1 cut(s)	474
MwoI	GCNNNNNNNGC	4 cut(s)	215, 278, 428, 497
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	2 cut(s)	168, 385
NlaIII	CATG	1 cut(s)	79
NlaIV	GGNNCC	2 cut(s)	12, 145
NmuCI	GTSAC	3 cut(s)	58, 190, 329
PfoI	TCCNGGA	1 cut(s)	472
PkrI	GCNGC	2 cut(s)	208, 430
PleI	GAGTC	1 cut(s)	406
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	259
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspN4I	GGNNCC	2 cut(s)	12, 145
PspPI	GGNCC	2 cut(s)	10, 454
PstI	CTGCAG	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	428
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	579
SatI	GCNGC	2 cut(s)	207, 429
Sau3AI	GATC	2 cut(s)	168, 385
Sau96I	GGNCC	2 cut(s)	10, 454
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	474
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	9 cut(s)	9, 36, 65, 122, 259, 277, 430, 484, 497
SfaNI	GCATC	3 cut(s)	205, 302, 534
SfcI	CTRYAG	1 cut(s)	429
SfoI	GGCGCC	1 cut(s)	145
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	298
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	1 cut(s)	568
SsiI	CCGC	1 cut(s)	551
SspDI	GGCGCC	1 cut(s)	143
SspI	AATATT	1 cut(s)	583
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	247, 313, 524
TaiI	ACGT	2 cut(s)	65, 497
TaqI	TCGA	2 cut(s)	287, 390
TasI	AATT	1 cut(s)	568
Tru1I	TTAA	1 cut(s)	579
Tru9I	TTAA	1 cut(s)	579
TscAI	CASTG	2 cut(s)	195, 424
TseFI	GTSAC	3 cut(s)	58, 190, 329
TseI	GCWGC	2 cut(s)	206, 428
Tsp45I	GTSAC	3 cut(s)	58, 190, 329
TspDTI	ATGAA	3 cut(s)	279, 390, 561
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	195, 424
VpaK11BI	GGWCC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.