Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0022704

Physical Location & Seq

Genomic Coordinates Forward (+)

35874587 .. 35875189

Gene Structure 603 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG327700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAGCTGGACCCTATGATTTTCTGTAGACAGCTTCCAAAAGATGATTTTGTTGTGGTCACGTACATCAGTCGCATAGTTGGGCAATGGGAAGCCAAAGTTCTACTAAAACCCCTGAGGTCATTGCCTTCTGTTGGAAGTGGCGCCTACCCGACAAATTATATTTGGATCTTCTCAACAAGGAAAGCAGTGACATCCGTTTTTGCTGCCTTTGATGCCCTTTGTGAAGAAGGGACTGCAACAACTGTATGCAGAGCTCTTGATGAAGTTGCAGGTCCAGCAGGTTACAAAGCCCTTTGTGAAGAGGGTGATCTCGATAAGGAGTCTCTACCATCAAGCTCCACTGCCTCAGCTGCAGACACCATTCCTATGGCTGAGGGCCTGATTGTGTTCTTTCCCGGACTACTACCTGTTTCTGCCACGTCAGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

144

Amino Acids

15.38

Weight (kDa)

4.55

Isoelectric Point (pI)

28.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0490601
rosa_laevigata	RLG00000022880
rosa_samantha	Rh3CG327700 Rh3DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	263, 272
AccB1I	GGYRCC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	28
AclWI	GGATC	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	134
AjiI	CACGTC	1 cut(s)	423
AluBI	AGCT	5 cut(s)	7, 34, 257, 339, 353
AluI	AGCT	5 cut(s)	7, 34, 257, 339, 353
Alw21I	GWGCWC	1 cut(s)	259
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	379
ApeKI	GCWGC	2 cut(s)	206, 353
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	10, 275, 379
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	1 cut(s)	320
AvaII	GGWCC	2 cut(s)	10, 275
AxyI	CCTNAGG	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvCI	CCTCAGC	2 cut(s)	349, 375
BbvI	GCAGC	2 cut(s)	193, 340
BccI	CCATC	1 cut(s)	340
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	330
BfmI	CTRYAG	2 cut(s)	25, 354
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	2 cut(s)	263, 272
BisI	GCNGC	2 cut(s)	207, 354
BlsI	GCNGC	2 cut(s)	208, 355
Bme1390I	CCNGG	1 cut(s)	399
Bme18I	GGWCC	2 cut(s)	10, 275
BmgBI	CACGTC	1 cut(s)	423
BmgT120I	GGNCC	3 cut(s)	10, 275, 379
BmiI	GGNNCC	2 cut(s)	12, 145
BmrFI	CCNGG	1 cut(s)	399
BmsI	GCATC	1 cut(s)	205
Bpu10I	CCTNAGC	2 cut(s)	349, 375
BpuMI	CCSGG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	92, 122
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	2 cut(s)	92, 122
BseMII	CTCAG	3 cut(s)	107, 363, 366
BseXI	GCAGC	2 cut(s)	193, 340
BshFI	GGCC	1 cut(s)	381
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	399
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmAI	GTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	381
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	2 cut(s)	168, 310
BspANI	GGCC	1 cut(s)	381
BspCNI	CTCAG	3 cut(s)	108, 362, 367
BspLI	GGNNCC	2 cut(s)	12, 145
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	2 cut(s)	263, 272
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	92, 122
BssMI	GATC	2 cut(s)	168, 310
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	116, 349, 375
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	171, 313
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	2 cut(s)	168, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	215, 278, 353, 425
BstSCI	CCNGG	1 cut(s)	397
BstSFI	CTRYAG	2 cut(s)	25, 354
BstV1I	GCAGC	2 cut(s)	193, 340
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	116
BsuRI	GGCC	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	2 cut(s)	195, 342
BtsIMutI	CAGTG	2 cut(s)	195, 342
BveI	ACCTGC	2 cut(s)	263, 272
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	10, 275, 379
Csp6I	GTAC	1 cut(s)	64
CviJI	RGCY	9 cut(s)	7, 34, 95, 257, 293, 339, 353, 374, 381
CviKI_1	RGCY	9 cut(s)	7, 34, 95, 257, 293, 339, 353, 374, 381
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	3 cut(s)	116, 349, 375
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	2 cut(s)	170, 312
DpnII	GATC	2 cut(s)	168, 310
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	2 cut(s)	10, 275
Eco53kI	GAGCTC	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	379
EcoT38I	GRGCYC	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaiI	YATR	6 cut(s)	17, 77, 162, 250, 371, 433
FaqI	GGGAC	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	28
Fnu4HI	GCNGC	2 cut(s)	207, 354
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	207, 354
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	2 cut(s)	207, 354
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	381
HapII	CCGG	1 cut(s)	399
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	1 cut(s)	323
HpaII	CCGG	1 cut(s)	399
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188III	TCNNGA	2 cut(s)	260, 314
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	2 cut(s)	138, 224
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	2 cut(s)	62, 422
HpyCH4V	TGCA	4 cut(s)	239, 252, 272, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	215, 278, 353, 425
HpyF3I	CTNAG	3 cut(s)	116, 349, 375
HpySE526I	ACGT	2 cut(s)	62, 422
Hsp92I	GRCGYC	1 cut(s)	144
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	2 cut(s)	168, 310
LmnI	GCTCC	2 cut(s)	4, 344
LpnPI	CCDG	7 cut(s)	128, 258, 267, 291, 395, 412, 423
Lsp1109I	GCAGC	2 cut(s)	193, 340
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	2 cut(s)	62, 422
MaeIII	GTNAC	3 cut(s)	58, 190, 284
MalI	GATC	2 cut(s)	170, 312
MboI	GATC	2 cut(s)	168, 310
MboII	GAAGA	3 cut(s)	163, 239, 314
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	259
MluCI	AATT	1 cut(s)	157
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	4 cut(s)	111, 298, 358, 370
MslI	CAYNNNNRTG	1 cut(s)	368
MspA1I	CMGCKG	1 cut(s)	353
MspI	CCGG	1 cut(s)	399
MspR9I	CCNGG	1 cut(s)	399
MwoI	GCNNNNNNNGC	4 cut(s)	215, 278, 353, 425
NarI	GGCGCC	1 cut(s)	144
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	168, 310
NlaIV	GGNNCC	2 cut(s)	12, 145
NmuCI	GTSAC	2 cut(s)	58, 190
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	208, 355
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	1 cut(s)	331
Ppu21I	YACGTR	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	12, 145
PspPI	GGNCC	3 cut(s)	10, 275, 379
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	368
SacI	GAGCTC	1 cut(s)	259
SatI	GCNGC	2 cut(s)	207, 354
Sau3AI	GATC	2 cut(s)	168, 310
Sau96I	GGNCC	3 cut(s)	10, 275, 379
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	399
SduI	GDGCHC	1 cut(s)	259
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	2 cut(s)	25, 354
SfoI	GGCGCC	1 cut(s)	145
SinI	GGWCC	2 cut(s)	10, 275
SmiMI	CAYNNNNRTG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	157
SspDI	GGCGCC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	259
StyD4I	CCNGG	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	2 cut(s)	65, 425
TaqI	TCGA	1 cut(s)	315
TasI	AATT	1 cut(s)	157
TscAI	CASTG	2 cut(s)	195, 349
TseFI	GTSAC	2 cut(s)	58, 190
TseI	GCWGC	2 cut(s)	206, 353
Tsp45I	GTSAC	2 cut(s)	58, 190
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	195, 349
VpaK11BI	GGWCC	2 cut(s)	10, 275
XmiI	GTMKAC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.