Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0022704

Physical Location & Seq

Genomic Coordinates Reverse (-)

13989372 .. 13990315

Gene Structure 944 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000022880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTATAGGATCAAAGAGGAAGACCTAGTAGAAGGTCAGATACCCTTTGATAATAGTAGAGTTGGATTCCAGGGAAATGGAACTGGACCCTCTGATTTTCTTGGCGCCTACCCGACAAATCATATTTGGCTCTCCTCAACAAGGAAAGCAGTGACATCCCTTTTTGCTGCCTTTGATACCCTTTGTGAGGAAGGAACTGCAACAACTGTATGCAGAGCTCTTGATGAAGTTGCAGATCTGCTAGCTAGAAACTTAGTAAGGGCTGAAGACTTCTTGGCCATTGTTGAGGGAGGAAGAGATGAAGAGGGTGATCTCGATGAGGAGTCTCTACCATCAAGCCCCACTGCCTCAGCTGCAGACACCATTCCTAAGGCTGAGGGCCTGATTGTATTCTTTCCTGGACTACCTGTTTCTTCCACGTCAGCAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

144

Amino Acids

15.26

Weight (kDa)

4.2

Isoelectric Point (pI)

36.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0490601
rosa_laevigata	RLG00000022880
rosa_samantha	Rh3CG327700 Rh3DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	104
AclWI	GGATC	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	276
AcuI	CTGAAG	1 cut(s)	285
AcyI	GRCGYC	1 cut(s)	105
AfiI	CCNNNNNNNGG	2 cut(s)	141, 187
AjiI	CACGTC	1 cut(s)	420
AjnI	CCWGG	2 cut(s)	69, 397
AluBI	AGCT	3 cut(s)	218, 245, 353
AluI	AGCT	3 cut(s)	218, 245, 353
Alw21I	GWGCWC	1 cut(s)	220
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	2 cut(s)	276, 379
ApeKI	GCWGC	2 cut(s)	167, 353
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	86, 379
AsuHPI	GGTGA	1 cut(s)	320
AsuNHI	GCTAGC	1 cut(s)	241
AvaII	GGWCC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	220
BarI	GAAGNNNNNNTAC	2 cut(s)	24, 56
BbsI	GAAGAC	2 cut(s)	27, 273
Bbv12I	GWGCWC	1 cut(s)	220
BbvCI	CCTCAGC	2 cut(s)	349, 375
BbvI	GCAGC	2 cut(s)	154, 340
BccI	CCATC	1 cut(s)	340
BciT130I	CCWGG	2 cut(s)	71, 399
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	3 cut(s)	26, 242, 246
BfmI	CTRYAG	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	108
BglII	AGATCT	1 cut(s)	235
BisI	GCNGC	2 cut(s)	168, 354
BlsI	GCNGC	2 cut(s)	169, 355
Bme1390I	CCNGG	2 cut(s)	71, 399
Bme18I	GGWCC	1 cut(s)	86
BmgBI	CACGTC	1 cut(s)	420
BmgT120I	GGNCC	2 cut(s)	86, 379
BmiI	GGNNCC	2 cut(s)	88, 106
BmrFI	CCNGG	2 cut(s)	71, 399
BmtI	GCTAGC	1 cut(s)	245
BpiI	GAAGAC	2 cut(s)	27, 273
Bpu10I	CCTNAGC	2 cut(s)	349, 375
BsaHI	GRCGYC	1 cut(s)	105
BsaJI	CCNNGG	1 cut(s)	70
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 187
Bse1I	ACTGG	1 cut(s)	88
Bse21I	CCTNAGG	1 cut(s)	369
BseBI	CCWGG	2 cut(s)	71, 399
BseDI	CCNNGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	155
BseLI	CCNNNNNNNGG	2 cut(s)	141, 187
BseMII	CTCAG	2 cut(s)	363, 366
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	2 cut(s)	124, 335
BseXI	GCAGC	2 cut(s)	154, 340
BshFI	GGCC	2 cut(s)	278, 381
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	220
BslI	CCNNNNNNNGG	2 cut(s)	141, 187
BsmAI	GTCTC	1 cut(s)	330
BsnI	GGCC	2 cut(s)	278, 381
Bsp1286I	GDGCHC	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	9, 235, 310
BspANI	GGCC	2 cut(s)	278, 381
BspCNI	CTCAG	2 cut(s)	362, 367
BspLI	GGNNCC	2 cut(s)	88, 106
BspMAI	CTGCAG	1 cut(s)	358
BspOI	GCTAGC	1 cut(s)	245
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	70
BssMI	GATC	3 cut(s)	9, 235, 310
BssNI	GRCGYC	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	71, 399
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	289, 297
BstACI	GRCGYC	1 cut(s)	105
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	4 cut(s)	253, 349, 369, 375
BstENI	CCTNNNNNAGG	2 cut(s)	139, 185
BstF5I	GGATG	1 cut(s)	155
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	3 cut(s)	12, 238, 313
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	3 cut(s)	9, 235, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	2 cut(s)	71, 399
BstSCI	CCNGG	2 cut(s)	69, 397
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	154, 340
BstV2I	GAAGAC	2 cut(s)	27, 273
BstX2I	RGATCY	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	369
BsuRI	GGCC	2 cut(s)	278, 381
BtrI	CACGTC	1 cut(s)	420
BtsCI	GGATG	1 cut(s)	155
BtsI	GCAGTG	2 cut(s)	156, 342
BtsIMutI	CAGTG	2 cut(s)	156, 342
Cac8I	GCNNGC	1 cut(s)	243
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	86, 379
CviJI	RGCY	9 cut(s)	130, 218, 245, 263, 278, 339, 353, 374, 381
CviKI_1	RGCY	9 cut(s)	130, 218, 245, 263, 278, 339, 353, 374, 381
DdeI	CTNAG	4 cut(s)	253, 349, 369, 375
DinI	GGCGCC	1 cut(s)	106
DpnI	GATC	3 cut(s)	11, 237, 312
DpnII	GATC	3 cut(s)	9, 235, 310
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	2 cut(s)	289, 297
EarI	CTCTTC	2 cut(s)	289, 297
Ecl136II	GAGCTC	1 cut(s)	218
Eco24I	GRGCYC	1 cut(s)	220
Eco47I	GGWCC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	218
Eco57I	CTGAAG	1 cut(s)	285
Eco81I	CCTNAGG	1 cut(s)	369
EcoICRI	GAGCTC	1 cut(s)	218
EcoNI	CCTNNNNNAGG	2 cut(s)	139, 185
EcoO109I	RGGNCCY	1 cut(s)	379
EcoRII	CCWGG	2 cut(s)	69, 397
EcoT38I	GRGCYC	1 cut(s)	220
EgeI	GGCGCC	1 cut(s)	106
EheI	GGCGCC	1 cut(s)	106
FaiI	YATR	4 cut(s)	6, 123, 211, 430
Fnu4HI	GCNGC	2 cut(s)	168, 354
FokI	GGATG	1 cut(s)	142
FriOI	GRGCYC	1 cut(s)	220
Fsp4HI	GCNGC	2 cut(s)	168, 354
FspBI	CTAG	3 cut(s)	26, 242, 246
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	2 cut(s)	168, 354
HaeII	RGCGCY	1 cut(s)	108
HaeIII	GGCC	2 cut(s)	278, 381
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HinfI	GANTC	2 cut(s)	66, 323
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	39, 94
Hpy188III	TCNNGA	2 cut(s)	221, 314
HpyAV	CCTTC	2 cut(s)	26, 185
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	4 cut(s)	200, 213, 233, 356
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	4 cut(s)	253, 349, 369, 375
HpySE526I	ACGT	1 cut(s)	419
Hsp92I	GRCGYC	1 cut(s)	105
HspAI	GCGC	1 cut(s)	105
KasI	GGCGCC	1 cut(s)	104
Kzo9I	GATC	3 cut(s)	9, 235, 310
LpnPI	CCDG	7 cut(s)	56, 69, 83, 384, 395, 411, 420
Lsp1109I	GCAGC	2 cut(s)	154, 340
MaeI	CTAG	3 cut(s)	26, 242, 246
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	3 cut(s)	11, 237, 312
MboI	GATC	3 cut(s)	9, 235, 310
MboII	GAAGA	5 cut(s)	32, 278, 306, 314, 405
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	220
MlsI	TGGCCA	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	278
Mly113I	GGCGCC	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	1 cut(s)	43
Mox20I	TGGCCA	1 cut(s)	278
MscI	TGGCCA	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	2 cut(s)	71, 399
MvaI	CCWGG	2 cut(s)	71, 399
MwoI	GCNNNNNNNGC	1 cut(s)	353
NarI	GGCGCC	1 cut(s)	105
NdeII	GATC	3 cut(s)	9, 235, 310
NheI	GCTAGC	1 cut(s)	241
NlaIV	GGNNCC	2 cut(s)	88, 106
NmuCI	GTSAC	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	397
PkrI	GCNGC	2 cut(s)	169, 355
PleI	GAGTC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	108
PpsI	GAGTC	1 cut(s)	331
Psp124BI	GAGCTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	69, 397
PspGI	CCWGG	2 cut(s)	69, 397
PspN4I	GGNNCC	2 cut(s)	88, 106
PspPI	GGNCC	2 cut(s)	86, 379
PstI	CTGCAG	1 cut(s)	358
PsuI	RGATCY	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	353
SacI	GAGCTC	1 cut(s)	220
SatI	GCNGC	2 cut(s)	168, 354
Sau3AI	GATC	3 cut(s)	9, 235, 310
Sau96I	GGNCC	2 cut(s)	86, 379
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	2 cut(s)	71, 399
SduI	GDGCHC	1 cut(s)	220
SetI	ASST	7 cut(s)	27, 37, 220, 247, 355, 409, 422
SfcI	CTRYAG	1 cut(s)	354
SfoI	GGCGCC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	86
SspDI	GGCGCC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	26, 242, 246
SstI	GAGCTC	1 cut(s)	220
StyD4I	CCNGG	2 cut(s)	69, 397
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	315
TfiI	GAWTC	1 cut(s)	66
TscAI	CASTG	2 cut(s)	156, 349
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	2 cut(s)	167, 353
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	2 cut(s)	240, 315
TspRI	CASTG	2 cut(s)	156, 349
VpaK11BI	GGWCC	1 cut(s)	86
XagI	CCTNNNNNAGG	2 cut(s)	139, 185
XspI	CTAG	3 cut(s)	26, 242, 246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.