Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0022704

Physical Location & Seq

Genomic Coordinates Forward (+)

35930818 .. 35931183

Gene Structure 366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG327000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAGCTGGACCCTATGATTTTCTGTGGACAGCTTCCAAAAGATGATTTTGTTGTGGTCACGTACGGCAGTCGCATAGTTGGGCAATGGGAAGCCAAAGTTCTACTAAAACCCCTGAGGTCATTGCCTTCTGTTGGAAGTGGCGCCTACCCGACAAATCATATTTGGATCTTCTCAACAAGGAAAGCAGTGACATCCGTTTTTGCTGCCTTTAATGCCCTTTGTGAAGAAGGGACTGCAACAACTGTATGCAGAGCTCTTGATGAAGTTGCAGGTATTGCAAAATCGAAAGCATCATTGTGGACAACGACGGTGGCTGTGCTATGTCAGGAAAGCATGGATTGGTGGAAGAAGATGCAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000278 GO:0000281 GO:0000394 GO:0000910 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0003972 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0007049 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0008356 GO:0008380 GO:0008452 GO:0009790 GO:0009791 GO:0009793 GO:0009966 GO:0009987 GO:0010069 GO:0010070 GO:0010154 GO:0010467 GO:0010646 GO:0010928 GO:0016070 GO:0016874 GO:0016886 GO:0022402 GO:0022414 GO:0023051 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0042245 GO:0043170 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048316 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051301 GO:0061458 GO:0061640 GO:0065007 GO:0071704 GO:0090304 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

tRNA_lig_CPD

Protein Analysis

121

Amino Acids

13.36

Weight (kDa)

7.64

Isoelectric Point (pI)

23.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022704)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0490601
rosa_laevigata	RLG00000022880
rosa_samantha	Rh3CG327700 Rh3DG327000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	263
AccB1I	GGYRCC	1 cut(s)	143
AclWI	GGATC	1 cut(s)	176
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	134
AluBI	AGCT	3 cut(s)	7, 34, 257
AluI	AGCT	3 cut(s)	7, 34, 257
Alw21I	GWGCWC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	176
ApeKI	GCWGC	1 cut(s)	206
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	10
AxyI	CCTNAGG	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	259
BbvI	GCAGC	1 cut(s)	193
BceAI	ACGGC	1 cut(s)	82
BfoI	RGCGCY	1 cut(s)	147
BfuAI	ACCTGC	1 cut(s)	263
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme18I	GGWCC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	12, 145
BmsI	GCATC	2 cut(s)	302, 345
BsaAI	YACGTR	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
Bse21I	CCTNAGG	1 cut(s)	116
Bse3DI	GCAATG	2 cut(s)	92, 122
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMI	GCAATG	2 cut(s)	92, 122
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	193
BshNI	GGYRCC	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	259
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	1 cut(s)	247
Bsp1286I	GDGCHC	1 cut(s)	259
Bsp143I	GATC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	108
BspLI	GGNNCC	2 cut(s)	12, 145
BspMI	ACCTGC	1 cut(s)	263
BspPI	GGATC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	143
BsrDI	GCAATG	2 cut(s)	92, 122
BssMI	GATC	1 cut(s)	168
BssNI	GRCGYC	1 cut(s)	144
Bst4CI	ACNGT	2 cut(s)	247, 313
BstACI	GRCGYC	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBAI	YACGTR	1 cut(s)	63
BstDEI	CTNAG	1 cut(s)	116
BstF5I	GGATG	1 cut(s)	194
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	215, 278
BstV1I	GCAGC	1 cut(s)	193
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
Bsu36I	CCTNAGG	1 cut(s)	116
BtsCI	GGATG	1 cut(s)	194
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	263
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	64
CspCI	CAANNNNNGTGG	2 cut(s)	294, 329
CviAII	CATG	1 cut(s)	337
CviJI	RGCY	5 cut(s)	7, 34, 95, 257, 317
CviKI_1	RGCY	5 cut(s)	7, 34, 95, 257, 317
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	116
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	1 cut(s)	170
DpnII	GATC	1 cut(s)	168
Ecl136II	GAGCTC	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	10
Eco53kI	GAGCTC	1 cut(s)	257
Eco81I	CCTNAGG	1 cut(s)	116
EcoICRI	GAGCTC	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	259
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
FaeI	CATG	1 cut(s)	340
FaiI	YATR	7 cut(s)	17, 77, 162, 250, 325, 338, 364
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	207
FokI	GGATG	1 cut(s)	181
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	1 cut(s)	207
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	207
HaeII	RGCGCY	1 cut(s)	147
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	340
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
Hpy166II	GTNNAC	2 cut(s)	29, 303
Hpy188III	TCNNGA	2 cut(s)	260, 329
Hpy8I	GTNNAC	2 cut(s)	29, 303
Hpy99I	CGWCG	1 cut(s)	313
HpyAV	CCTTC	2 cut(s)	138, 224
HpyCH4III	ACNGT	2 cut(s)	247, 313
HpyCH4IV	ACGT	1 cut(s)	62
HpyCH4V	TGCA	5 cut(s)	239, 252, 272, 281, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	215, 278
HpyF3I	CTNAG	1 cut(s)	116
HpySE526I	ACGT	1 cut(s)	62
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	340
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
Kzo9I	GATC	1 cut(s)	168
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	3 cut(s)	128, 258, 314
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	2 cut(s)	302, 345
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	58, 190
MalI	GATC	1 cut(s)	170
MboI	GATC	1 cut(s)	168
MboII	GAAGA	4 cut(s)	163, 239, 361, 364
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	259
Mly113I	GGCGCC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	115
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	213
MslI	CAYNNNNRTG	1 cut(s)	298
MwoI	GCNNNNNNNGC	2 cut(s)	215, 278
NarI	GGCGCC	1 cut(s)	144
NdeII	GATC	1 cut(s)	168
NlaIII	CATG	1 cut(s)	340
NlaIV	GGNNCC	2 cut(s)	12, 145
NmuCI	GTSAC	2 cut(s)	58, 190
Pfl23II	CGTACG	1 cut(s)	63
PkrI	GCNGC	1 cut(s)	208
PluTI	GGCGCC	1 cut(s)	147
Ppu21I	YACGTR	1 cut(s)	63
Psp124BI	GAGCTC	1 cut(s)	259
PspLI	CGTACG	1 cut(s)	63
PspN4I	GGNNCC	2 cut(s)	12, 145
PspPI	GGNCC	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	168
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	298
SacI	GAGCTC	1 cut(s)	259
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	207
Sau3AI	GATC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	10
SduI	GDGCHC	1 cut(s)	259
SetI	ASST	6 cut(s)	9, 36, 65, 122, 259, 277
SfaNI	GCATC	2 cut(s)	302, 345
SfoI	GGCGCC	1 cut(s)	145
SgeI	CNNG	9 cut(s)	20, 73, 127, 163, 192, 272, 285, 341, 349
SinI	GGWCC	1 cut(s)	10
SmiMI	CAYNNNNRTG	1 cut(s)	298
SspDI	GGCGCC	1 cut(s)	143
SstI	GAGCTC	1 cut(s)	259
TaaI	ACNGT	2 cut(s)	247, 313
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	1 cut(s)	287
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	2 cut(s)	58, 190
TseI	GCWGC	1 cut(s)	206
Tsp45I	GTSAC	2 cut(s)	58, 190
TspDTI	ATGAA	1 cut(s)	279
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	1 cut(s)	195
VpaK11BI	GGWCC	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.