RchiOBHm_Chr3g0490651

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0020161
Physical Location & Seq
Forward (+)
37306768 .. 37316553
9786 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 363 bp
ATGGATCTGCTGTTGAGTTGTCTCCTTGGAGAAGGGCATTATGCGCTCCTTAGACGAGCAGAGCTAAAAACATTGGCGGATCTGCATGCGAATGAGGCAGGGAAAGGTGGAGAGTTGCCACATCATGTAACTACGACTATTGGTGGTGCTTTGGATTTGACGCAGAAAACTGCTGAAGATGTTTCGAATCCAATGAATACACTGGGTCCAATAATGAGCAGAGGTCACAGTCGTATACCAATATATTCAGGAAATCTAAATAATATGATTGGCCTCATTTTGGCAAAAAATTTGATCTTCTGTCACCCAGAAGAGGAAACCCCAGTTAAGTACATGACAATCAGAAGAATTCCAAGTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

120

Amino Acids

13.07

Weight (kDa)

6.58

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33700 AT4G33700
fragaria_vesca FvH4_2g02720
rosa_chinensis RchiOBHm_Chr3g0490651
rosa_rugosa Rorug03G0245000
rosa_samantha Rh3AG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 235
AciI CCGC 1 cut(s) 77
AclWI GGATC 2 cut(s) 12, 87
AcsI RAATTY 2 cut(s) 289, 348
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 2 cut(s) 280, 313
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 2 cut(s) 12, 87
AoxI GGCC 1 cut(s) 271
ApoI RAATTY 2 cut(s) 289, 348
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 296
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 207
BmrI ACTGGG 2 cut(s) 212, 317
BmuI ACTGGG 2 cut(s) 212, 317
Bpu14I TTCGAA 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 280, 313
Bse1I ACTGG 2 cut(s) 207, 323
BseDI CCNNGG 1 cut(s) 25
BseLI CCNNNNNNNGG 2 cut(s) 280, 313
BseNI ACTGG 2 cut(s) 207, 323
BshFI GGCC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 280, 313
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 1 cut(s) 273
Bsp119I TTCGAA 1 cut(s) 185
Bsp143I GATC 3 cut(s) 4, 79, 294
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 273
BspLI GGNNCC 1 cut(s) 207
BspPI GGATC 2 cut(s) 12, 87
BspT104I TTCGAA 1 cut(s) 185
BsrI ACTGG 2 cut(s) 207, 323
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 3 cut(s) 4, 79, 294
BssNAI GTATAC 1 cut(s) 236
BssT1I CCWWGG 1 cut(s) 25
Bst1107I GTATAC 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 230
Bst6I CTCTTC 1 cut(s) 306
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 50
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 3 cut(s) 7, 82, 297
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 4, 79, 294
BstMWI GCNNNNNNNGC 2 cut(s) 43, 95
BstNSI RCATGY 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 4, 79
BstYI RGATCY 2 cut(s) 4, 79
BstZ17I GTATAC 1 cut(s) 236
BsuRI GGCC 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 331
CviAII CATG 3 cut(s) 86, 125, 334
CviJI RGCY 2 cut(s) 64, 273
CviKI_1 RGCY 2 cut(s) 64, 273
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 6, 81, 296
DpnII GATC 3 cut(s) 4, 79, 294
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 348
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 3 cut(s) 89, 128, 337
FaiI YATR 7 cut(s) 42, 87, 126, 236, 244, 266, 335
FatI CATG 3 cut(s) 85, 124, 333
FblI GTMKAC 1 cut(s) 235
GlaI GCGC 1 cut(s) 45
HaeIII GGCC 1 cut(s) 273
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 46
Hin1II CATG 3 cut(s) 89, 128, 337
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HinfI GANTC 1 cut(s) 187
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 1 cut(s) 236
Hpy188I TCNGA 1 cut(s) 344
Hpy188III TCNNGA 1 cut(s) 249
Hpy8I GTNNAC 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 230
HpyCH4V TGCA 1 cut(s) 85
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 95
HpyF3I CTNAG 1 cut(s) 50
Hsp92II CATG 3 cut(s) 89, 128, 337
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 3 cut(s) 4, 79, 294
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 5 cut(s) 84, 188, 234, 321, 336
MaeIII GTNAC 3 cut(s) 127, 224, 302
MalI GATC 3 cut(s) 6, 81, 296
MboI GATC 3 cut(s) 4, 79, 294
MboII GAAGA 4 cut(s) 188, 289, 323, 357
MflI RGATCY 2 cut(s) 4, 79
MluCI AATT 2 cut(s) 289, 348
MnlI CCTC 4 cut(s) 88, 215, 284, 307
MseI TTAA 1 cut(s) 327
MslI CAYNNNNRTG 1 cut(s) 90
MwoI GCNNNNNNNGC 2 cut(s) 43, 95
NdeII GATC 3 cut(s) 4, 79, 294
NlaIII CATG 3 cut(s) 89, 128, 337
NlaIV GGNNCC 1 cut(s) 207
NmuCI GTSAC 2 cut(s) 224, 302
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 185
PaeI GCATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 207
PspPI GGNCC 1 cut(s) 206
PsuI RGATCY 2 cut(s) 4, 79
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 3 cut(s) 4, 79, 294
Sau96I GGNCC 1 cut(s) 206
SetI ASST 3 cut(s) 66, 109, 226
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 1 cut(s) 90
SphI GCATGC 1 cut(s) 89
Sse9I AATT 2 cut(s) 289, 348
SsiI CCGC 1 cut(s) 77
StyI CCWWGG 1 cut(s) 25
TaaI ACNGT 1 cut(s) 230
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 289, 348
TatI WGTACW 1 cut(s) 330
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 207
TseFI GTSAC 2 cut(s) 224, 302
Tsp45I GTSAC 2 cut(s) 224, 302
TspDTI ATGAA 1 cut(s) 209
TspRI CASTG 1 cut(s) 207
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 2 cut(s) 289, 348
XceI RCATGY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.