Rh3AG294300

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0020161
Physical Location & Seq
Forward (+)
35665783 .. 35667631
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG294300.1

Sequence Viewer

Length: 627 bp
ATGGATCTGCTGTTGAGTTGTCTCCTTGGAGAAGGGCATTATGCGCTCCTTAGACGAGCAGAGCTAAAAACATTGGCGGATCTGCATGCGAATGAGGCAGGGAAAGGTGGAGAGTTGCCACATCATGTAACTACGACTATTGGTGGTGCTTTGGATTTGACGCAGAAAACTGCTGAAGATGTTTCGAATCCAATGTCAGAAAATTTTACCCTTGACATAAACTCCAAACTTCACATGAATACACTGGGTCCAATAATGAGCAGAGGTCACAGTCGTATACCAATATATTCAGGAAATCTAAATAATATGATTGGCCTCATTTTGGCAAAAAATTTGATCTTCTGTCACCCAGAAGAGGAAACCCCAGTTAAGTACATGACAATCAGAAGAATTCCAAGGACTTACGGTGGAGGTGATACTTTATCGTGGTTCCATTCAGCGTTTCAGAAGAAGGATAAGGCGTTGCAGGAGCAAAATAATTTTCTGACAAAAAAAGGTGAAGGAGAAGGAGAAAACAGCATTGCACTCCTTGAATTTCGGTTGGACACTGATCTAATTCAGTTACATCTTAAAGGTCAACTTAAAGCGGGGGATGCATGGCACAACGTTGATAGGCCGTTTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

208

Amino Acids

23.15

Weight (kDa)

6.36

Isoelectric Point (pI)

37.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G33700 AT4G33700
fragaria_vesca FvH4_2g02720
rosa_chinensis RchiOBHm_Chr3g0490651
rosa_rugosa Rorug03G0245000
rosa_samantha Rh3AG294300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 277
AciI CCGC 2 cut(s) 77, 587
AclI AACGTT 1 cut(s) 606
AclWI GGATC 2 cut(s) 12, 87
AcsI RAATTY 4 cut(s) 202, 331, 390, 533
AcuI CTGAAG 1 cut(s) 195
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 2 cut(s) 322, 355
AgsI TTSAA 1 cut(s) 533
AluBI AGCT 1 cut(s) 64
AluI AGCT 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 26
AlwI GGATC 2 cut(s) 12, 87
AoxI GGCC 2 cut(s) 313, 614
ApoI RAATTY 4 cut(s) 202, 331, 390, 533
ArsI GACNNNNNNTTYG 2 cut(s) 179, 211
AspLEI GCGC 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 248
AsuHPI GGTGA 3 cut(s) 338, 425, 509
AsuII TTCGAA 1 cut(s) 185
AvaII GGWCC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 601
BcoDI GTCTC 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 248
BmiI GGNNCC 2 cut(s) 249, 431
BmrI ACTGGG 2 cut(s) 254, 359
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 2 cut(s) 254, 359
Bpu14I TTCGAA 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 25, 395
BsaXI ACNNNNNCTCC 2 cut(s) 206, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 322, 355
Bse1I ACTGG 2 cut(s) 249, 365
Bse3DI GCAATG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 25, 395
BseGI GGATG 1 cut(s) 598
BseLI CCNNNNNNNGG 2 cut(s) 322, 355
BseMI GCAATG 1 cut(s) 519
BseNI ACTGG 2 cut(s) 249, 365
BshFI GGCC 2 cut(s) 315, 616
BslI CCNNNNNNNGG 2 cut(s) 322, 355
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 2 cut(s) 315, 616
Bsp119I TTCGAA 1 cut(s) 185
Bsp143I GATC 4 cut(s) 4, 79, 336, 550
BspACI CCGC 2 cut(s) 77, 587
BspANI GGCC 2 cut(s) 315, 616
BspLI GGNNCC 2 cut(s) 249, 431
BspPI GGATC 2 cut(s) 12, 87
BspT104I TTCGAA 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 519
BsrI ACTGG 2 cut(s) 249, 365
BssECI CCNNGG 2 cut(s) 25, 395
BssMI GATC 4 cut(s) 4, 79, 336, 550
BssNAI GTATAC 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 25, 395
Bst1107I GTATAC 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 272, 407
Bst6I CTCTTC 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 598
BstHHI GCGC 1 cut(s) 46
BstKTI GATC 4 cut(s) 7, 82, 339, 553
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 4 cut(s) 4, 79, 336, 550
BstMWI GCNNNNNNNGC 3 cut(s) 43, 95, 593
BstNSI RCATGY 1 cut(s) 89
BstX2I RGATCY 2 cut(s) 4, 79
BstYI RGATCY 2 cut(s) 4, 79
BstZ17I GTATAC 1 cut(s) 278
BsuRI GGCC 2 cut(s) 315, 616
BtsCI GGATG 1 cut(s) 598
BtsIMutI CAGTG 2 cut(s) 242, 546
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 1 cut(s) 46
Cfr13I GGNCC 1 cut(s) 248
CseI GACGC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 373
CviAII CATG 5 cut(s) 86, 125, 235, 376, 597
CviJI RGCY 3 cut(s) 64, 315, 616
CviKI_1 RGCY 3 cut(s) 64, 315, 616
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 1 cut(s) 50
DpnI GATC 4 cut(s) 6, 81, 338, 552
DpnII GATC 4 cut(s) 4, 79, 336, 550
Eam1104I CTCTTC 1 cut(s) 348
EarI CTCTTC 1 cut(s) 348
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 2 cut(s) 25, 395
Eco47I GGWCC 1 cut(s) 248
Eco57I CTGAAG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 390
EcoT14I CCWWGG 2 cut(s) 25, 395
EcoT22I ATGCAT 1 cut(s) 598
ErhI CCWWGG 2 cut(s) 25, 395
FaeI CATG 5 cut(s) 89, 128, 238, 379, 600
FalI AAGNNNNNCTT 2 cut(s) 564, 596
FatI CATG 5 cut(s) 85, 124, 234, 375, 596
FauI CCCGC 1 cut(s) 580
FblI GTMKAC 1 cut(s) 277
FokI GGATG 1 cut(s) 605
GlaI GCGC 1 cut(s) 45
HaeIII GGCC 2 cut(s) 315, 616
HgaI GACGC 1 cut(s) 169
HhaI GCGC 1 cut(s) 46
Hin1II CATG 5 cut(s) 89, 128, 238, 379, 600
Hin6I GCGC 1 cut(s) 44
HinP1I GCGC 1 cut(s) 44
HincII GTYRAC 1 cut(s) 578
HindII GTYRAC 1 cut(s) 578
HinfI GANTC 1 cut(s) 187
HphI GGTGA 3 cut(s) 338, 425, 509
Hpy166II GTNNAC 2 cut(s) 278, 578
Hpy188I TCNGA 4 cut(s) 199, 386, 447, 486
Hpy188III TCNNGA 1 cut(s) 291
Hpy8I GTNNAC 2 cut(s) 278, 578
HpyAV CCTTC 4 cut(s) 26, 445, 494, 500
HpyCH4III ACNGT 2 cut(s) 272, 407
HpyCH4IV ACGT 1 cut(s) 606
HpyCH4V TGCA 4 cut(s) 85, 466, 524, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 95, 593
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 606
Hsp92II CATG 5 cut(s) 89, 128, 238, 379, 600
HspAI GCGC 1 cut(s) 44
Kzo9I GATC 4 cut(s) 4, 79, 336, 550
LmnI GCTCC 2 cut(s) 51, 469
LpnPI CCDG 6 cut(s) 84, 230, 276, 363, 378, 452
LweI GCATC 1 cut(s) 583
MaeII ACGT 1 cut(s) 606
MaeIII GTNAC 4 cut(s) 127, 266, 344, 561
MalI GATC 4 cut(s) 6, 81, 338, 552
MboI GATC 4 cut(s) 4, 79, 336, 550
MboII GAAGA 5 cut(s) 188, 331, 365, 399, 460
MflI RGATCY 2 cut(s) 4, 79
MluCI AATT 6 cut(s) 202, 331, 390, 478, 533, 555
MmeI TCCRAC 1 cut(s) 522
MnlI CCTC 5 cut(s) 88, 257, 326, 349, 404
Mph1103I ATGCAT 1 cut(s) 598
MseI TTAA 3 cut(s) 369, 570, 582
MslI CAYNNNNRTG 1 cut(s) 90
MwoI GCNNNNNNNGC 3 cut(s) 43, 95, 593
NdeII GATC 4 cut(s) 4, 79, 336, 550
NlaIII CATG 5 cut(s) 89, 128, 238, 379, 600
NlaIV GGNNCC 2 cut(s) 249, 431
NmuCI GTSAC 2 cut(s) 266, 344
NsiI ATGCAT 1 cut(s) 598
NspI RCATGY 1 cut(s) 89
NspV TTCGAA 1 cut(s) 185
PaeI GCATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 187
Psp1406I AACGTT 1 cut(s) 606
PspN4I GGNNCC 2 cut(s) 249, 431
PspPI GGNCC 1 cut(s) 248
PsuI RGATCY 2 cut(s) 4, 79
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 90
SaqAI TTAA 3 cut(s) 369, 570, 582
Sau3AI GATC 4 cut(s) 4, 79, 336, 550
Sau96I GGNCC 1 cut(s) 248
SetI ASST 7 cut(s) 66, 109, 268, 415, 499, 577, 609
SfaNI GCATC 1 cut(s) 583
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 90
SphI GCATGC 1 cut(s) 89
Sse9I AATT 6 cut(s) 202, 331, 390, 478, 533, 555
SsiI CCGC 2 cut(s) 77, 587
StyI CCWWGG 2 cut(s) 25, 395
TaaI ACNGT 2 cut(s) 272, 407
TaiI ACGT 1 cut(s) 609
TaqI TCGA 1 cut(s) 185
TasI AATT 6 cut(s) 202, 331, 390, 478, 533, 555
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 3 cut(s) 369, 570, 582
Tru9I TTAA 3 cut(s) 369, 570, 582
TscAI CASTG 2 cut(s) 249, 553
TseFI GTSAC 2 cut(s) 266, 344
Tsp45I GTSAC 2 cut(s) 266, 344
TspDTI ATGAA 1 cut(s) 251
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 2 cut(s) 249, 553
VpaK11BI GGWCC 1 cut(s) 248
XapI RAATTY 4 cut(s) 202, 331, 390, 533
XceI RCATGY 1 cut(s) 89
XmiI GTMKAC 1 cut(s) 277
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.