FvH4_2g02720

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0007184
Physical Location & Seq
Reverse (-)
2165502 .. 2170491
4990 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02720.t3

Sequence Viewer

Length: 1278 bp
ATGGCGGTGGAGTATGAGTGTTGCAGTAGCGCCTTCTTCATACACATACTGGTGATCGTGTTTCTGGTTTTGTTCGCGGGGCTAATGTCTGGGCTCACCTTGGGCCTCATGTCCCTCAGCATCGTCGATCTTGAGGTCTTGGCCAAGTCTGGGAAGCCCAAGGATCGCAAGCACGCCGAAAAGATCTTGCCAGTTGTCAGAAAGCAGCATCTGTTGCTTTGCACCCTGCTGATTTGCAATGCTGCTGCAATGGAGGCACTTCCCATTTTTCTGGATGGTCTGGTGACGGCTTGGGGTGCAATCCTAATTTCGGTGACACTGATTCTTCTGTTTGGAGAGATTATACCACAATCTATCTGTACCCGATATGGTTTGGCGATAGGTGCAGCAGTGACTCCATTTGTCCGTGTTCTTCTGTGGGTCTGCTTTCCTATTGCATATCCAATTAGCAAGTTATTGGACTATCTTCTTGGCCACGGACATGTAGCTCTGTTTCGCAGAGCAGAGTTAAAAACACTTGTAGATTTTCATGGCAATGAGGCTGGGAAAGGTGGAGAATTGACACATGATGAGACCACCATTATTGCTGGAGCCCTTGAGCTCAGTGAGAAAACTGCTAGTGATGCCATGACGCCTATAGCTGAAACTTTTGCAATTGATATCAATGACAAGCTTGACAGGAATCTGATGAATTTGATAATGGAGAAAGGGCATAGTAGAGTGCCAGTGTACTATGAGGAGCCCACAAACATAATTGGACTTGTTCTGGTCAAAAATTTGTTGACTGTTCATCCAGAAGATGAAACACCTGTAAAGAATGTGACTATACGCAAGATTCCAAGGGTTCAAGAAACATTGCCCTTGTATGACATACTGAATGAATTTCAGAAAGGTCACAGTCACATGGCTATTGTTGTAAGACGGTGCAATACTGCGGAGCAACCTGATGGCAATACAGCTGACAGTCCAGTGAAAGAAGTGAGAGTGGACATTGATGGTGAAAAGCCTCTTCAGGAGAAGACTTTGAAGAGCAAAAGATCACTGAATAAATGGAAGAGTTTCCCTAACAGTGGGCATACTTCTTTCAAAAGCGGGTCTAGAAGCAAGAAATGGTCAAAGGAGATGTATTCAGACATCCTTCAGATAGATGATGAAGCACTCCCGAGGCTCCCCGAAGAGGAAGTGGCTGTTGGCATTATAACAATGGAAGACGTCATTGAAGAGCTTTTACAGGAGGAAATATTTGATGAAACTGATCATCAATACGAGGAGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

426

Amino Acids

47.38

Weight (kDa)

5.33

Isoelectric Point (pI)

42.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 17 - 189 4.3e-36 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1199
AatII GACGTC 1 cut(s) 1215
AccII CGCG 1 cut(s) 77
AciI CCGC 4 cut(s) 5, 77, 935, 1092
AclWI GGATC 1 cut(s) 171
AcoI YGGCCR 2 cut(s) 141, 472
AcsI RAATTY 3 cut(s) 691, 775, 881
AcuI CTGAAG 2 cut(s) 995, 1124
AcyI GRCGYC 2 cut(s) 632, 1212
AfaI GTAC 2 cut(s) 361, 731
AfiI CCNNNNNNNGG 4 cut(s) 150, 310, 1070, 1177
AflIII ACRYGT 1 cut(s) 481
AgsI TTSAA 4 cut(s) 848, 1027, 1087, 1220
AjuI GAANNNNNNNTTGG 2 cut(s) 1173, 1205
AluBI AGCT 6 cut(s) 488, 601, 641, 673, 959, 1225
AluI AGCT 6 cut(s) 488, 601, 641, 673, 959, 1225
Alw21I GWGCWC 1 cut(s) 603
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 1162
AoxI GGCC 3 cut(s) 103, 141, 472
ApeKI GCWGC 4 cut(s) 205, 242, 245, 386
ApoI RAATTY 3 cut(s) 691, 775, 881
Asp700I GAANNNNTTC 1 cut(s) 1058
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 5 cut(s) 64, 88, 295, 325, 1010
AvaI CYCGRG 1 cut(s) 1162
BalI TGGCCA 2 cut(s) 143, 474
BanII GRGCYC 4 cut(s) 96, 595, 603, 744
BarI GAAGNNNNNNTAC 2 cut(s) 1212, 1244
BbsI GAAGAC 2 cut(s) 1025, 1215
Bbv12I GWGCWC 1 cut(s) 603
BbvCI CCTCAGC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 217, 229, 232, 398
BccI CCATC 3 cut(s) 269, 941, 989
BceAI ACGGC 1 cut(s) 303
BclI TGATCA 1 cut(s) 1255
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 2 cut(s) 618, 1098
BfmI CTRYAG 1 cut(s) 636
BfoI RGCGCY 1 cut(s) 33
BglII AGATCT 1 cut(s) 183
BisI GCNGC 4 cut(s) 206, 243, 246, 387
BlsI GCNGC 4 cut(s) 207, 244, 247, 388
BmeT110I CYCGRG 1 cut(s) 1162
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 3 cut(s) 592, 741, 1169
BmsI GCATC 3 cut(s) 129, 217, 613
BpiI GAAGAC 2 cut(s) 1025, 1215
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 116
BpuEI CTTGAG 2 cut(s) 152, 617
BsaHI GRCGYC 2 cut(s) 632, 1212
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 5 cut(s) 99, 159, 475, 839, 1163
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 4 cut(s) 150, 310, 1070, 1177
Bse1I ACTGG 4 cut(s) 54, 191, 725, 968
Bse3DI GCAATG 4 cut(s) 244, 255, 541, 854
BseDI CCNNGG 5 cut(s) 99, 159, 475, 839, 1163
BseGI GGATG 3 cut(s) 280, 790, 1134
BseLI CCNNNNNNNGG 4 cut(s) 150, 310, 1070, 1177
BseMI GCAATG 4 cut(s) 244, 255, 541, 854
BseMII CTCAG 2 cut(s) 130, 616
BseNI ACTGG 4 cut(s) 54, 191, 725, 968
BseRI GAGGAG 1 cut(s) 752
BseXI GCAGC 4 cut(s) 217, 229, 232, 398
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 105, 143, 474
BsiHKAI GWGCWC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 1162
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 4 cut(s) 150, 310, 1070, 1177
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 105, 143, 474
Bso31I GGTCTC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 1162
Bsp1286I GDGCHC 4 cut(s) 96, 595, 603, 744
Bsp143I GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
BspACI CCGC 4 cut(s) 5, 77, 935, 1092
BspANI GGCC 3 cut(s) 105, 143, 474
BspCNI CTCAG 2 cut(s) 129, 615
BspFNI CGCG 1 cut(s) 77
BspLI GGNNCC 3 cut(s) 592, 741, 1169
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 2 cut(s) 1022, 1215
BspTNI GGTCTC 1 cut(s) 566
BsrDI GCAATG 4 cut(s) 244, 255, 541, 854
BsrI ACTGG 4 cut(s) 54, 191, 725, 968
BssECI CCNNGG 5 cut(s) 99, 159, 475, 839, 1163
BssMI GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
BssNI GRCGYC 2 cut(s) 632, 1212
BssT1I CCWWGG 3 cut(s) 99, 159, 839
Bst4CI ACNGT 5 cut(s) 787, 899, 924, 965, 1070
Bst6I CTCTTC 5 cut(s) 1014, 1022, 1049, 1170, 1215
BstACI GRCGYC 2 cut(s) 632, 1212
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 170, 174
BstDEI CTNAG 2 cut(s) 116, 602
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 3 cut(s) 280, 790, 1134
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 33
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 6 cut(s) 57, 130, 166, 186, 1040, 1258
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
BstMWI GCNNNNNNNGC 5 cut(s) 214, 254, 296, 383, 623
BstNSI RCATGY 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 636
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 4 cut(s) 217, 229, 232, 398
BstV2I GAAGAC 2 cut(s) 1025, 1215
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 183
BsuRI GGCC 3 cut(s) 105, 143, 474
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 3 cut(s) 280, 790, 1134
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 7 cut(s) 317, 396, 610, 732, 975, 1040, 1075
Cac8I GCNNGC 2 cut(s) 170, 174
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 1 cut(s) 640
Csp6I GTAC 2 cut(s) 360, 730
CspCI CAANNNNNGTGG 2 cut(s) 565, 600
CviAII CATG 6 cut(s) 109, 482, 530, 566, 628, 904
CviQI GTAC 2 cut(s) 360, 730
DdeI CTNAG 2 cut(s) 116, 602
DpnI GATC 6 cut(s) 56, 129, 165, 185, 1039, 1257
DpnII GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
EaeI YGGCCR 2 cut(s) 141, 472
Eam1104I CTCTTC 5 cut(s) 1014, 1022, 1049, 1170, 1215
EarI CTCTTC 5 cut(s) 1014, 1022, 1049, 1170, 1215
Ecl136II GAGCTC 1 cut(s) 601
Eco130I CCWWGG 3 cut(s) 99, 159, 839
Eco24I GRGCYC 4 cut(s) 96, 595, 603, 744
Eco31I GGTCTC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 661
Eco53kI GAGCTC 1 cut(s) 601
Eco57I CTGAAG 2 cut(s) 995, 1124
Eco88I CYCGRG 1 cut(s) 1162
EcoICRI GAGCTC 1 cut(s) 601
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 3 cut(s) 99, 159, 839
EcoT38I GRGCYC 4 cut(s) 96, 595, 603, 744
ErhI CCWWGG 3 cut(s) 99, 159, 839
FaeI CATG 6 cut(s) 112, 485, 533, 569, 631, 907
FaqI GGGAC 1 cut(s) 97
FatI CATG 6 cut(s) 108, 481, 529, 565, 627, 903
FauI CCCGC 2 cut(s) 70, 1085
FbaI TGATCA 1 cut(s) 1255
Fnu4HI GCNGC 4 cut(s) 206, 243, 246, 387
FokI GGATG 3 cut(s) 287, 777, 1121
FriOI GRGCYC 4 cut(s) 96, 595, 603, 744
Fsp4HI GCNGC 4 cut(s) 206, 243, 246, 387
FspBI CTAG 2 cut(s) 618, 1098
GlaI GCGC 1 cut(s) 31
GluI GCNGC 4 cut(s) 206, 243, 246, 387
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 1 cut(s) 609
HaeII RGCGCY 1 cut(s) 33
HaeIII GGCC 3 cut(s) 105, 143, 474
HgaI GACGC 1 cut(s) 640
HhaI GCGC 1 cut(s) 32
Hin1I GRCGYC 2 cut(s) 632, 1212
Hin1II CATG 6 cut(s) 112, 485, 533, 569, 631, 907
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 5 cut(s) 322, 394, 682, 835, 1271
HphI GGTGA 5 cut(s) 64, 88, 295, 325, 1010
Hpy166II GTNNAC 3 cut(s) 730, 783, 988
Hpy188I TCNGA 5 cut(s) 200, 687, 888, 1132, 1143
Hpy188III TCNNGA 7 cut(s) 131, 272, 794, 848, 1013, 1098, 1162
Hpy8I GTNNAC 3 cut(s) 730, 783, 988
Hpy99I CGWCG 1 cut(s) 128
HpyAV CCTTC 2 cut(s) 43, 1148
HpyCH4III ACNGT 5 cut(s) 787, 899, 924, 965, 1070
HpyCH4IV ACGT 1 cut(s) 1212
HpyCH4V TGCA 9 cut(s) 24, 222, 237, 248, 299, 386, 437, 653, 927
HpyF10VI GCNNNNNNNGC 5 cut(s) 214, 254, 296, 383, 623
HpyF3I CTNAG 2 cut(s) 116, 602
HpySE526I ACGT 1 cut(s) 1212
Hsp92I GRCGYC 2 cut(s) 632, 1212
Hsp92II CATG 6 cut(s) 112, 485, 533, 569, 631, 907
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
LguI GCTCTTC 2 cut(s) 1022, 1215
LmnI GCTCC 4 cut(s) 590, 739, 937, 1173
Lsp1109I GCAGC 4 cut(s) 217, 229, 232, 398
LweI GCATC 3 cut(s) 129, 217, 613
MaeI CTAG 2 cut(s) 618, 1098
MaeII ACGT 1 cut(s) 1212
MaeIII GTNAC 6 cut(s) 283, 313, 391, 820, 893, 899
MalI GATC 6 cut(s) 56, 129, 165, 185, 1039, 1257
MboI GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 183
MhlI GDGCHC 4 cut(s) 96, 595, 603, 744
MlsI TGGCCA 2 cut(s) 143, 474
MluCI AATT 8 cut(s) 306, 444, 557, 654, 691, 753, 775, 881
MluNI TGGCCA 2 cut(s) 143, 474
MlyI GAGTC 1 cut(s) 388
Mox20I TGGCCA 2 cut(s) 143, 474
MroXI GAANNNNTTC 1 cut(s) 1058
MscI TGGCCA 2 cut(s) 143, 474
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 3 cut(s) 50, 480, 534
Msp20I TGGCCA 2 cut(s) 143, 474
MspA1I CMGCKG 1 cut(s) 959
MunI CAATTG 1 cut(s) 654
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 5 cut(s) 214, 254, 296, 383, 623
NdeII GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
NlaIII CATG 6 cut(s) 112, 485, 533, 569, 631, 907
NlaIV GGNNCC 3 cut(s) 592, 741, 1169
NmuCI GTSAC 6 cut(s) 283, 313, 391, 820, 893, 899
NspI RCATGY 1 cut(s) 485
PciI ACATGT 1 cut(s) 481
PciSI GCTCTTC 2 cut(s) 1022, 1215
PdmI GAANNNNTTC 1 cut(s) 1058
PfeI GAWTC 3 cut(s) 322, 682, 835
PkrI GCNGC 4 cut(s) 207, 244, 247, 388
PleI GAGTC 1 cut(s) 388
PpsI GAGTC 1 cut(s) 388
PscI ACATGT 1 cut(s) 481
PsiI TTATAA 1 cut(s) 1199
Psp124BI GAGCTC 1 cut(s) 603
PspFI CCCAGC 1 cut(s) 542
PspN4I GGNNCC 3 cut(s) 592, 741, 1169
PspPI GGNCC 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 959
RsaI GTAC 2 cut(s) 361, 731
RsaNI GTAC 2 cut(s) 360, 730
RseI CAYNNNNRTG 3 cut(s) 50, 480, 534
SacI GAGCTC 1 cut(s) 603
SapI GCTCTTC 2 cut(s) 1022, 1215
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 4 cut(s) 206, 243, 246, 387
Sau3AI GATC 6 cut(s) 54, 127, 163, 183, 1037, 1255
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 1 cut(s) 388
SduI GDGCHC 4 cut(s) 96, 595, 603, 744
SfaNI GCATC 3 cut(s) 129, 217, 613
SfcI CTRYAG 1 cut(s) 636
SmiMI CAYNNNNRTG 3 cut(s) 50, 480, 534
SmlI CTYRAG 2 cut(s) 131, 596
SmoI CTYRAG 2 cut(s) 131, 596
Sse9I AATT 8 cut(s) 306, 444, 557, 654, 691, 753, 775, 881
SsiI CCGC 4 cut(s) 5, 77, 935, 1092
SspI AATATT 1 cut(s) 1242
SspMI CTAG 2 cut(s) 618, 1098
SstI GAGCTC 1 cut(s) 603
StyI CCWWGG 3 cut(s) 99, 159, 839
TaaI ACNGT 5 cut(s) 787, 899, 924, 965, 1070
TaiI ACGT 1 cut(s) 1215
TaqI TCGA 1 cut(s) 126
TasI AATT 8 cut(s) 306, 444, 557, 654, 691, 753, 775, 881
TatI WGTACW 1 cut(s) 729
TfiI GAWTC 3 cut(s) 322, 682, 835
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 7 cut(s) 324, 396, 610, 732, 975, 1047, 1075
TseFI GTSAC 6 cut(s) 283, 313, 391, 820, 893, 899
TseI GCWGC 4 cut(s) 205, 242, 245, 386
Tsp45I GTSAC 6 cut(s) 283, 313, 391, 820, 893, 899
TspDTI ATGAA 8 cut(s) 28, 518, 704, 779, 816, 894, 1167, 1263
TspGWI ACGGA 2 cut(s) 395, 492
TspRI CASTG 7 cut(s) 324, 396, 610, 732, 975, 1047, 1075
XapI RAATTY 3 cut(s) 691, 775, 881
XbaI TCTAGA 1 cut(s) 1097
XceI RCATGY 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 1058
XspI CTAG 2 cut(s) 618, 1098
ZraI GACGTC 1 cut(s) 1213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.