AT2G14520

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007184
Physical Location & Seq
Reverse (-)
6181946 .. 6184910
2965 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G14520.4

Sequence Viewer

Length: 1272 bp
ATGGCGGTGGAATATGAATGCTGCGGGACCAGCTTCTTCATACACATCGCTGTGATAGTGTTACTAGTCTTGTTCGCTGGACTAATGTCTGGTCTTACTTTGGGTCTTATGTCTATGAGTCTCGTTGATCTTGAGGTTCTTGCTAAATCCGGTACTCCCAGAGATCGTATCCATGCTGCAAAGATTTTACCAGTTGTGAAAAATCAGCATCTTTTGCTTTGTACTTTACTGATATGTAATGCAGCTGCTATGGAGGCGCTTCCTATATTTCTTGATGCTCTTGTGACGGCTTGGGGTGCCATTTTGATTTCAGTGACGCTAATTCTTCTCTTTGGTGAGATCATACCTCAGTCAGTCTGTTCTCGTCATGGTTTAGCTATTGGTGCAACAGTGGCTCCATTTGTTCGTGTTCTAGTTTGGATCTGCTTACCAGTTGCATGGCCGATTAGTAAGCTGCTAGACTTTCTACTTGGTCATGGTCGTGTAGCTCTTTTCCGAAGAGCTGAGCTGAAAACACTTGTGGATTTGCATGGAAATGAGGCTGGTAAAGGTGGAGAATTGACACATGATGAAACAACAATCATTGCTGGAGCTCTTGAACTATCTGAGAAAATGGCTAAAGATGCAATGACACCAATTTCTGACACTTTTGTGATTGATATCAATGCCAAACTAGACAGGGATTTGATGAATTTGATTCTTGATAAAGGTCATAGCAGAGTCCCAGTATACTATGAGCAACGTACCAACATAATTGGACTTGTTTTGGTGAAGAACTTATTGACTATCAATCCAGATGAAGAAATACAAGTAAAAAATGTGACTATACGAAGAATCCCAAGAGTTCCAGAAACGTTACCGTTATATGATATATTAAACGAGTTCCAGAAAGGACATAGCCACATGGCTGTTGTTGTGAGACAGTGTGACAAAATCCACCCGTTACAGAGTAATGATGCTGCAAACGAGACTGTAAATGAAGTCAGAGTGGATGTGGATTATGAGAGATCCCCACAGGAAACGAAGTTAAAGAGAAGGAGATCATTACAGAAATGGAAGAGCTTTCCAAACCGAGCAAATTCGTTAGGGTCGAGGAGCAAGAGGTGGTCCAAAGATAATGATGCTGATATTCTGCAACTTAACGAACATCCACTTCCAAAGCTAGATGAGGAGGAAGATGCTGTTGGTATCATTACAATGGAAGATGTCATTGAAGAACTTTTACAGGAAGAGATATTCGATGAGACGGATCATCATTTTGAAGACTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

423

Amino Acids

47.31

Weight (kDa)

5.42

Isoelectric Point (pI)

49.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 18 - 189 5.2e-36 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 729
AciI CCGC 2 cut(s) 5, 24
AclI AACGTT 1 cut(s) 854
AclWI GGATC 3 cut(s) 428, 1002, 1257
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 2 cut(s) 691, 1078
AfaI GTAC 3 cut(s) 154, 223, 745
AgsI TTSAA 3 cut(s) 599, 1214, 1262
AhlI ACTAGT 1 cut(s) 64
AjuI GAANNNNNNNTTGG 2 cut(s) 1167, 1199
AleI CACNNNNGTG 1 cut(s) 650
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 4 cut(s) 125, 913, 962, 1238
AlwI GGATC 3 cut(s) 428, 1002, 1257
AoxI GGCC 1 cut(s) 440
ApeKI GCWGC 6 cut(s) 21, 176, 242, 245, 454, 959
ApoI RAATTY 2 cut(s) 691, 1078
AspLEI GCGC 1 cut(s) 259
AspS9I GGNCC 2 cut(s) 27, 1107
AsuHPI GGTGA 2 cut(s) 347, 781
AvaII GGWCC 2 cut(s) 27, 1107
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 595
BarI GAAGNNNNNNTAC 2 cut(s) 1206, 1238
Bbv12I GWGCWC 1 cut(s) 595
BbvI GCAGC 6 cut(s) 8, 163, 232, 254, 441, 946
BceAI ACGGC 1 cut(s) 303
BciVI GTATCC 1 cut(s) 179
BcoDI GTCTC 4 cut(s) 125, 913, 962, 1238
BcuI ACTAGT 1 cut(s) 64
BfaI CTAG 5 cut(s) 65, 413, 458, 674, 1163
BfoI RGCGCY 1 cut(s) 260
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 6 cut(s) 22, 177, 243, 246, 455, 960
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 6 cut(s) 23, 178, 244, 247, 456, 961
Bme18I GGWCC 2 cut(s) 27, 1107
BmgT120I GGNCC 2 cut(s) 27, 1107
BmiI GGNNCC 3 cut(s) 28, 298, 396
BmrI ACTGGG 1 cut(s) 719
BmsI GCATC 6 cut(s) 217, 265, 613, 946, 1111, 1168
BmuI ACTGGG 1 cut(s) 719
BoxI GACNNNNGTC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 609
Bpu1102I GCTNAGC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 659
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 2 cut(s) 379, 409
Bse1I ACTGG 3 cut(s) 191, 431, 725
Bse3DI GCAATG 2 cut(s) 582, 633
Bse8I GATNNNNATC 1 cut(s) 659
BseGI GGATG 2 cut(s) 997, 1147
BseJI GATNNNNATC 1 cut(s) 659
BseMI GCAATG 2 cut(s) 582, 633
BseMII CTCAG 3 cut(s) 362, 495, 597
BseNI ACTGG 3 cut(s) 191, 431, 725
BseRI GAGGAG 2 cut(s) 1108, 1184
BseXI GCAGC 6 cut(s) 8, 163, 232, 254, 441, 946
BshFI GGCC 1 cut(s) 442
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 595
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 2 cut(s) 40, 707
BsmAI GTCTC 4 cut(s) 125, 913, 962, 1238
BsmBI CGTCTC 1 cut(s) 1238
BsmFI GGGAC 2 cut(s) 40, 707
BsmI GAATGC 1 cut(s) 23
BsnI GGCC 1 cut(s) 442
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 2 cut(s) 5, 24
BspANI GGCC 1 cut(s) 442
BspCNI CTCAG 3 cut(s) 361, 496, 598
BspLI GGNNCC 3 cut(s) 28, 298, 396
BspPI GGATC 3 cut(s) 428, 1002, 1257
BspQI GCTCTTC 2 cut(s) 493, 1052
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 582, 633
BsrI ACTGG 3 cut(s) 191, 431, 725
BssMI GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
BssNAI GTATAC 1 cut(s) 730
Bst1107I GTATAC 1 cut(s) 730
Bst4CI ACNGT 4 cut(s) 391, 861, 924, 973
Bst6I CTCTTC 3 cut(s) 493, 1052, 1224
BstAPI GCANNNNNTGC 1 cut(s) 214
BstDEI CTNAG 3 cut(s) 348, 504, 606
BstF5I GGATG 2 cut(s) 997, 1147
BstH2I RGCGCY 1 cut(s) 260
BstHHI GCGC 1 cut(s) 259
BstKTI GATC 7 cut(s) 130, 166, 342, 423, 1010, 1043, 1252
BstMAI GTCTC 4 cut(s) 125, 913, 962, 1238
BstMBI GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
BstMWI GCNNNNNNNGC 7 cut(s) 30, 214, 254, 296, 383, 392, 623
BstPAI GACNNNNGTC 1 cut(s) 85
BstV1I GCAGC 6 cut(s) 8, 163, 232, 254, 441, 946
BstX2I RGATCY 2 cut(s) 420, 1007
BstXI CCANNNNNNTGG 1 cut(s) 438
BstYI RGATCY 2 cut(s) 420, 1007
BstZ17I GTATAC 1 cut(s) 730
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 442
BtgZI GCGATG 1 cut(s) 31
BtsCI GGATG 2 cut(s) 997, 1147
BtsIMutI CAGTG 3 cut(s) 318, 396, 929
CfoI GCGC 1 cut(s) 259
Cfr13I GGNCC 2 cut(s) 27, 1107
CseI GACGC 1 cut(s) 325
Csp6I GTAC 3 cut(s) 153, 222, 744
CviAII CATG 7 cut(s) 173, 368, 438, 476, 530, 566, 904
CviQI GTAC 3 cut(s) 153, 222, 744
DdeI CTNAG 3 cut(s) 348, 504, 606
DpnI GATC 7 cut(s) 129, 165, 341, 422, 1009, 1042, 1251
DpnII GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 3 cut(s) 493, 1052, 1224
EarI CTCTTC 3 cut(s) 493, 1052, 1224
Ecl136II GAGCTC 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 595
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 2 cut(s) 27, 1107
Eco53kI GAGCTC 1 cut(s) 593
EcoICRI GAGCTC 1 cut(s) 593
EcoRV GATATC 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 1238
FaeI CATG 7 cut(s) 176, 371, 441, 479, 533, 569, 907
FaqI GGGAC 2 cut(s) 40, 707
FatI CATG 7 cut(s) 172, 367, 437, 475, 529, 565, 903
FauI CCCGC 1 cut(s) 17
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 6 cut(s) 22, 177, 243, 246, 455, 960
FokI GGATG 2 cut(s) 1004, 1134
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 6 cut(s) 22, 177, 243, 246, 455, 960
FspBI CTAG 5 cut(s) 65, 413, 458, 674, 1163
GlaI GCGC 1 cut(s) 258
GluI GCNGC 6 cut(s) 22, 177, 243, 246, 455, 960
GsuI CTGGAG 1 cut(s) 609
HaeII RGCGCY 1 cut(s) 260
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 325
HhaI GCGC 1 cut(s) 259
Hin1II CATG 7 cut(s) 176, 371, 441, 479, 533, 569, 907
Hin6I GCGC 1 cut(s) 257
HinP1I GCGC 1 cut(s) 257
HinfI GANTC 4 cut(s) 118, 697, 720, 834
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 347, 781
Hpy166II GTNNAC 1 cut(s) 730
Hpy188I TCNGA 4 cut(s) 497, 607, 643, 986
Hpy188III TCNNGA 7 cut(s) 131, 272, 596, 701, 794, 848, 886
Hpy8I GTNNAC 1 cut(s) 730
HpyAV CCTTC 1 cut(s) 1029
HpyCH4III ACNGT 4 cut(s) 391, 861, 924, 973
HpyCH4IV ACGT 2 cut(s) 742, 854
HpyCH4V TGCA 8 cut(s) 179, 242, 386, 437, 529, 626, 962, 1135
HpyF10VI GCNNNNNNNGC 7 cut(s) 30, 214, 254, 296, 383, 392, 623
HpyF3I CTNAG 3 cut(s) 348, 504, 606
HpySE526I ACGT 2 cut(s) 742, 854
Hsp92II CATG 7 cut(s) 176, 371, 441, 479, 533, 569, 907
HspAI GCGC 1 cut(s) 257
Kzo9I GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
LguI GCTCTTC 2 cut(s) 493, 1052
LmnI GCTCC 3 cut(s) 400, 590, 1095
Lsp1109I GCAGC 6 cut(s) 8, 163, 232, 254, 441, 946
LweI GCATC 6 cut(s) 217, 265, 613, 946, 1111, 1168
MaeI CTAG 5 cut(s) 65, 413, 458, 674, 1163
MaeII ACGT 2 cut(s) 742, 854
MaeIII GTNAC 7 cut(s) 60, 283, 313, 820, 855, 926, 942
MalI GATC 7 cut(s) 129, 165, 341, 422, 1009, 1042, 1251
MboI GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
MflI RGATCY 2 cut(s) 420, 1007
MhlI GDGCHC 1 cut(s) 595
MluCI AATT 6 cut(s) 321, 557, 636, 691, 753, 1078
MlyI GAGTC 2 cut(s) 127, 729
MnlI CCTC 8 cut(s) 127, 247, 357, 532, 1086, 1095, 1162, 1165
MseI TTAA 3 cut(s) 875, 1028, 1140
MslI CAYNNNNRTG 5 cut(s) 50, 480, 534, 650, 1196
MspA1I CMGCKG 1 cut(s) 245
MspI CCGG 1 cut(s) 150
Mva1269I GAATGC 1 cut(s) 23
MwoI GCNNNNNNNGC 7 cut(s) 30, 214, 254, 296, 383, 392, 623
NdeII GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
NlaIII CATG 7 cut(s) 176, 371, 441, 479, 533, 569, 907
NlaIV GGNNCC 3 cut(s) 28, 298, 396
NmuCI GTSAC 4 cut(s) 283, 313, 820, 926
OliI CACNNNNGTG 1 cut(s) 650
PciSI GCTCTTC 2 cut(s) 493, 1052
PcsI WCGNNNNNNNCGW 1 cut(s) 1088
PctI GAATGC 1 cut(s) 23
PfeI GAWTC 2 cut(s) 697, 834
PkrI GCNGC 6 cut(s) 23, 178, 244, 247, 456, 961
PleI GAGTC 2 cut(s) 126, 728
PpsI GAGTC 2 cut(s) 126, 728
PshAI GACNNNNGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 595
Psp1406I AACGTT 1 cut(s) 854
PspN4I GGNNCC 3 cut(s) 28, 298, 396
PspPI GGNCC 2 cut(s) 27, 1107
PsuI RGATCY 2 cut(s) 420, 1007
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 3 cut(s) 154, 223, 745
RsaNI GTAC 3 cut(s) 153, 222, 744
RseI CAYNNNNRTG 5 cut(s) 50, 480, 534, 650, 1196
SacI GAGCTC 1 cut(s) 595
SapI GCTCTTC 2 cut(s) 493, 1052
SaqAI TTAA 3 cut(s) 875, 1028, 1140
SatI GCNGC 6 cut(s) 22, 177, 243, 246, 455, 960
Sau3AI GATC 7 cut(s) 127, 163, 339, 420, 1007, 1040, 1249
Sau96I GGNCC 2 cut(s) 27, 1107
SchI GAGTC 2 cut(s) 127, 729
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 6 cut(s) 217, 265, 613, 946, 1111, 1168
SinI GGWCC 2 cut(s) 27, 1107
SmiMI CAYNNNNRTG 5 cut(s) 50, 480, 534, 650, 1196
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
SpeI ACTAGT 1 cut(s) 64
Sse9I AATT 6 cut(s) 321, 557, 636, 691, 753, 1078
SsiI CCGC 2 cut(s) 5, 24
SspMI CTAG 5 cut(s) 65, 413, 458, 674, 1163
SstI GAGCTC 1 cut(s) 595
TaaI ACNGT 4 cut(s) 391, 861, 924, 973
TaiI ACGT 2 cut(s) 745, 857
TaqI TCGA 2 cut(s) 1091, 1239
TasI AATT 6 cut(s) 321, 557, 636, 691, 753, 1078
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 2 cut(s) 697, 834
Tru1I TTAA 3 cut(s) 875, 1028, 1140
Tru9I TTAA 3 cut(s) 875, 1028, 1140
TscAI CASTG 3 cut(s) 318, 396, 929
TseFI GTSAC 4 cut(s) 283, 313, 820, 926
TseI GCWGC 6 cut(s) 21, 176, 242, 245, 454, 959
Tsp45I GTSAC 4 cut(s) 283, 313, 820, 926
TspDTI ATGAA 6 cut(s) 28, 30, 585, 704, 813, 993
TspGWI ACGGA 1 cut(s) 1262
TspRI CASTG 3 cut(s) 318, 396, 929
VpaK11BI GGWCC 2 cut(s) 27, 1107
XapI RAATTY 2 cut(s) 691, 1078
XmiI GTMKAC 1 cut(s) 729
XspI CTAG 5 cut(s) 65, 413, 458, 674, 1163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.