Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0007184

Physical Location & Seq

Genomic Coordinates Reverse (-)

36646031 .. 36672888

Gene Structure 26858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTTCGAAGGAACTGTACGAAGCAATCTAGTTTCTCTTGTTGGCCGACATAGCTGTTTGCCTTCTCCTAGACCCACTTCATCGCTGTTTGATAGTAACAAAACTCAAAGCCTTAAACAAATGTTCTCATTATATGCTAGGCCGAACAGAGCTATTAATTTTTTTACTTTCGATAGTGAGCTAAAATCACCTAGAACTAGGATTGAGAAACTGGAGCTGAAAATAGATTCGATCTGGTTCGACTCGGTGGAGGAGATAAGGAGATGGCTACTATTTGAGTGGGTTCAGCTTGTAGTGAGGTTACCCGGTGTGAGACATCTCTGGGTTGACAGATTCTGGGAAGAATTTCAATACAAGACTATGGTGTTTTACTATGTACATGGTGTTGATGAATTAAACTGGGTATTGTTATGCCATTTGAAAACAGATGAAAGTGGAAAGGCGTCCAGGAGATTGCAAAAGGATTACTTGGTTATTGCTATATCTGTTAAGCTCAAGCATGAAGATAATGGTAGCAATCAAACGCGTGGTCGACTACGCCGTCAAATCCCGATCCAAGTCCGACAAGAGCGGCGTGGAGACCTAGAAGGTGAAGATGGCGACGGAGGTGACTTGTTGCGAGCCCAAGTTCTGGTTTTGTTTGCTTGTGATCATCGGCCTGGTCTGCTTCGCCGGAATGATGGACGGCCTTACTCGGGCCTCATGTCCCCGGGCCTCGTCGACCTCGAGGTCCTCGCGAAGTCGGCCGCCCTCGGGATCGGCCGACACGCCGCTAAAATCTATCCGGTGGTGAGAAAGGAGAGTGCGGATGGGTTGGCTGGTTACATTTCCGATCCGATTAGGGAACGGGGATTTGAGATTGACGGTTTTTCTCTTGAAGTGTCTATACCACCGTTATCCCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

301

Amino Acids

34.58

Weight (kDa)

9.21

Isoelectric Point (pI)

56.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14520 AT2G14520 AT2G14520 AT2G14520 AT4G33700
fragaria_vesca	FvH4_2g02720
malus_domestica	MD05G1110800.v1.1 MD10G1114300.v1.1
prunus_persica	Prupe.8G155800_v2.0.a1 Prupe.8G155800_v2.0.a1 Prupe.8G155800_v2.0.a1
pyrus_communis	pycom05g10680 pycom10g09870
rosa_chinensis	RchiOBHm_Chr6g0247171
rosa_laevigata	RLG00000015216
rosa_multiflora	Rmu_sc0004577.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111840 Rroxscaffold_7G00214260 Rroxscaffold_7G00214290
rosa_rugosa	Rorug05G0523900
rosa_samantha	Rh6AG038200 Rh6BG033100 Rh6CG033800 Rh6DG031500
rosa_wichuraiana	Rw6G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	540, 728
AbsI	CCTCGAGG	1 cut(s)	725
AccB7I	CCANNNNNTGG	1 cut(s)	631
AccBSI	CCGCTC	1 cut(s)	571
AccI	GTMKAC	2 cut(s)	532, 720
AccII	CGCG	2 cut(s)	526, 737
AciI	CCGC	4 cut(s)	571, 747, 771, 806
AclWI	GGATC	3 cut(s)	547, 764, 827
AcoI	YGGCCR	3 cut(s)	43, 744, 760
AcsI	RAATTY	1 cut(s)	344
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	2 cut(s)	18, 378
AfiI	CCNNNNNNNGG	3 cut(s)	631, 695, 753
AflIII	ACRYGT	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	350, 421, 878
AjnI	CCWGG	2 cut(s)	446, 658
AluBI	AGCT	6 cut(s)	54, 152, 181, 217, 289, 493
AluI	AGCT	6 cut(s)	54, 152, 181, 217, 289, 493
Alw26I	GTCTC	2 cut(s)	307, 573
AlwI	GGATC	3 cut(s)	547, 764, 827
AlwNI	CAGNNNCTG	1 cut(s)	336
Ama87I	CYCGRG	4 cut(s)	694, 709, 725, 752
AoxI	GGCC	8 cut(s)	43, 140, 656, 686, 697, 712, 744, 760
ApoI	RAATTY	1 cut(s)	344
ArsI	GACNNNNNNTTYG	2 cut(s)	514, 546
AseI	ATTAAT	1 cut(s)	156
Asp700I	GAANNNNTTC	1 cut(s)	345
AspS9I	GGNCC	3 cut(s)	697, 712, 730
AsuC2I	CCSGG	4 cut(s)	306, 710, 711, 901
AsuHPI	GGTGA	4 cut(s)	180, 602, 620, 802
AsuII	TTCGAA	1 cut(s)	6
AvaI	CYCGRG	4 cut(s)	694, 709, 725, 752
AvaII	GGWCC	1 cut(s)	730
BanII	GRGCYC	1 cut(s)	625
BarI	GAAGNNNNNNTAC	3 cut(s)	32, 870, 902
BccI	CCATC	4 cut(s)	258, 590, 674, 803
BceAI	ACGGC	2 cut(s)	525, 701
BciT130I	CCWGG	2 cut(s)	448, 660
BclI	TGATCA	1 cut(s)	649
BcnI	CCSGG	4 cut(s)	306, 710, 711, 901
BcoDI	GTCTC	2 cut(s)	307, 573
BfaI	CTAG	6 cut(s)	29, 69, 138, 192, 198, 584
BisI	GCNGC	3 cut(s)	572, 747, 771
BlsI	GCNGC	3 cut(s)	573, 748, 772
Bme1390I	CCNGG	6 cut(s)	306, 448, 660, 710, 711, 901
Bme18I	GGWCC	1 cut(s)	730
BmeT110I	CYCGRG	4 cut(s)	694, 709, 725, 752
BmgT120I	GGNCC	3 cut(s)	697, 712, 730
BmrFI	CCNGG	6 cut(s)	306, 448, 660, 710, 711, 901
BmrI	ACTGGG	1 cut(s)	409
BmuI	ACTGGG	1 cut(s)	409
BpmI	CTGGAG	1 cut(s)	233
Bpu14I	TTCGAA	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	4 cut(s)	306, 710, 711, 901
BsaHI	GRCGYC	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	573
BsaJI	CCNNGG	3 cut(s)	708, 709, 751
BsaWI	WCCGGW	1 cut(s)	784
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 695, 753
Bse1I	ACTGG	2 cut(s)	216, 404
BseBI	CCWGG	2 cut(s)	448, 660
BseDI	CCNNGG	3 cut(s)	708, 709, 751
BseGI	GGATG	1 cut(s)	814
BseLI	CCNNNNNNNGG	3 cut(s)	631, 695, 753
BseNI	ACTGG	2 cut(s)	216, 404
BseRI	GAGGAG	1 cut(s)	266
BseX3I	CGGCCG	2 cut(s)	744, 760
Bsh1236I	CGCG	2 cut(s)	526, 737
Bsh1285I	CGRYCG	2 cut(s)	747, 763
BshFI	GGCC	8 cut(s)	45, 142, 658, 688, 699, 714, 746, 762
BsiEI	CGRYCG	2 cut(s)	747, 763
BsiHKCI	CYCGRG	4 cut(s)	694, 709, 725, 752
BsiSI	CCGG	5 cut(s)	306, 673, 710, 785, 901
BslFI	GGGAC	1 cut(s)	691
BslI	CCNNNNNNNGG	3 cut(s)	631, 695, 753
BsmAI	GTCTC	2 cut(s)	307, 573
BsmFI	GGGAC	1 cut(s)	691
BsnI	GGCC	8 cut(s)	45, 142, 658, 688, 699, 714, 746, 762
Bso31I	GGTCTC	1 cut(s)	573
BsoBI	CYCGRG	4 cut(s)	694, 709, 725, 752
Bsp119I	TTCGAA	1 cut(s)	6
Bsp1286I	GDGCHC	1 cut(s)	625
Bsp1407I	TGTACA	1 cut(s)	376
Bsp143I	GATC	5 cut(s)	231, 552, 649, 756, 832
Bsp68I	TCGCGA	1 cut(s)	737
BspACI	CCGC	4 cut(s)	571, 747, 771, 806
BspANI	GGCC	8 cut(s)	45, 142, 658, 688, 699, 714, 746, 762
BspFNI	CGCG	2 cut(s)	526, 737
BspPI	GGATC	3 cut(s)	547, 764, 827
BspT104I	TTCGAA	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	573
BsrBI	CCGCTC	1 cut(s)	571
BsrGI	TGTACA	1 cut(s)	376
BsrI	ACTGG	2 cut(s)	216, 404
BssECI	CCNNGG	3 cut(s)	708, 709, 751
BssMI	GATC	5 cut(s)	231, 552, 649, 756, 832
BssNI	GRCGYC	1 cut(s)	443
Bst2UI	CCWGG	2 cut(s)	448, 660
Bst4CI	ACNGT	3 cut(s)	16, 866, 894
BstACI	GRCGYC	1 cut(s)	443
BstAUI	TGTACA	1 cut(s)	376
BstBI	TTCGAA	1 cut(s)	6
BstC8I	GCNNGC	1 cut(s)	621
BstEII	GGTNACC	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	814
BstFNI	CGCG	2 cut(s)	526, 737
BstKTI	GATC	5 cut(s)	234, 555, 652, 759, 835
BstMAI	GTCTC	2 cut(s)	307, 573
BstMBI	GATC	5 cut(s)	231, 552, 649, 756, 832
BstMCI	CGRYCG	2 cut(s)	747, 763
BstMWI	GCNNNNNNNGC	3 cut(s)	51, 664, 743
BstNI	CCWGG	2 cut(s)	448, 660
BstPI	GGTNACC	1 cut(s)	300
BstSCI	CCNGG	6 cut(s)	304, 446, 658, 708, 709, 899
BstUI	CGCG	2 cut(s)	526, 737
BstZI	CGGCCG	2 cut(s)	744, 760
BsuRI	GGCC	8 cut(s)	45, 142, 658, 688, 699, 714, 746, 762
BtgZI	GCGATG	1 cut(s)	66
BtsCI	GGATG	1 cut(s)	814
BtuMI	TCGCGA	1 cut(s)	737
Cac8I	GCNNGC	1 cut(s)	621
CaiI	CAGNNNCTG	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	697, 712, 730
Cfr9I	CCCGGG	1 cut(s)	709
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	17, 377
CviAII	CATG	3 cut(s)	380, 500, 703
CviQI	GTAC	2 cut(s)	17, 377
DpnI	GATC	5 cut(s)	233, 554, 651, 758, 834
DpnII	GATC	5 cut(s)	231, 552, 649, 756, 832
DrdI	GACNNNNNNGTC	2 cut(s)	540, 728
DseDI	GACNNNNNNGTC	2 cut(s)	540, 728
EaeI	YGGCCR	3 cut(s)	43, 744, 760
EagI	CGGCCG	2 cut(s)	744, 760
EclXI	CGGCCG	2 cut(s)	744, 760
Eco24I	GRGCYC	1 cut(s)	625
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	1 cut(s)	730
Eco52I	CGGCCG	2 cut(s)	744, 760
Eco88I	CYCGRG	4 cut(s)	694, 709, 725, 752
Eco91I	GGTNACC	1 cut(s)	300
EcoO109I	RGGNCCY	1 cut(s)	730
EcoO65I	GGTNACC	1 cut(s)	300
EcoRII	CCWGG	2 cut(s)	446, 658
EcoT38I	GRGCYC	1 cut(s)	625
FaeI	CATG	3 cut(s)	383, 503, 706
FalI	AAGNNNNNCTT	2 cut(s)	452, 484
FaqI	GGGAC	1 cut(s)	691
FatI	CATG	3 cut(s)	379, 499, 702
FbaI	TGATCA	1 cut(s)	649
FblI	GTMKAC	2 cut(s)	532, 720
Fnu4HI	GCNGC	3 cut(s)	572, 747, 771
FokI	GGATG	1 cut(s)	821
FriOI	GRGCYC	1 cut(s)	625
Fsp4HI	GCNGC	3 cut(s)	572, 747, 771
FspBI	CTAG	6 cut(s)	29, 69, 138, 192, 198, 584
GluI	GCNGC	3 cut(s)	572, 747, 771
GsuI	CTGGAG	1 cut(s)	233
HaeIII	GGCC	8 cut(s)	45, 142, 658, 688, 699, 714, 746, 762
HapII	CCGG	5 cut(s)	306, 673, 710, 785, 901
HgaI	GACGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	3 cut(s)	383, 503, 706
HincII	GTYRAC	3 cut(s)	328, 533, 721
HindII	GTYRAC	3 cut(s)	328, 533, 721
HinfI	GANTC	3 cut(s)	227, 242, 333
HpaII	CCGG	5 cut(s)	306, 673, 710, 785, 901
HphI	GGTGA	4 cut(s)	180, 602, 620, 802
Hpy166II	GTNNAC	3 cut(s)	328, 533, 721
Hpy188I	TCNGA	3 cut(s)	563, 832, 837
Hpy188III	TCNNGA	4 cut(s)	550, 736, 754, 875
Hpy8I	GTNNAC	3 cut(s)	328, 533, 721
Hpy99I	CGWCG	2 cut(s)	605, 722
HpyAV	CCTTC	2 cut(s)	72, 581
HpyCH4III	ACNGT	3 cut(s)	16, 866, 894
HpyCH4V	TGCA	1 cut(s)	457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	51, 664, 743
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	383, 503, 706
Ksp22I	TGATCA	1 cut(s)	649
Kzo9I	GATC	5 cut(s)	231, 552, 649, 756, 832
LmnI	GCTCC	1 cut(s)	214
MaeI	CTAG	6 cut(s)	29, 69, 138, 192, 198, 584
MaeIII	GTNAC	4 cut(s)	95, 300, 608, 821
MalI	GATC	5 cut(s)	233, 554, 651, 758, 834
MbiI	CCGCTC	1 cut(s)	571
MboI	GATC	5 cut(s)	231, 552, 649, 756, 832
MboII	GAAGA	3 cut(s)	353, 515, 605
MhlI	GDGCHC	1 cut(s)	625
MluCI	AATT	3 cut(s)	157, 344, 392
MluI	ACGCGT	1 cut(s)	524
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	586
MnlI	CCTC	9 cut(s)	244, 291, 599, 710, 721, 725, 734, 743, 761
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	4 cut(s)	114, 156, 395, 489
MspI	CCGG	5 cut(s)	306, 673, 710, 785, 901
MspR9I	CCNGG	6 cut(s)	306, 448, 660, 710, 711, 901
MvaI	CCWGG	2 cut(s)	448, 660
MvnI	CGCG	2 cut(s)	526, 737
MwoI	GCNNNNNNNGC	3 cut(s)	51, 664, 743
NciI	CCSGG	4 cut(s)	306, 710, 711, 901
NdeII	GATC	5 cut(s)	231, 552, 649, 756, 832
NlaIII	CATG	3 cut(s)	383, 503, 706
NmuCI	GTSAC	1 cut(s)	608
NruI	TCGCGA	1 cut(s)	737
NspV	TTCGAA	1 cut(s)	6
PaeR7I	CTCGAG	1 cut(s)	725
PcsI	WCGNNNNNNNCGW	2 cut(s)	538, 723
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	2 cut(s)	227, 333
PflMI	CCANNNNNTGG	1 cut(s)	631
PfoI	TCCNGGA	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	573, 748, 772
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	730
Psp6I	CCWGG	2 cut(s)	446, 658
PspEI	GGTNACC	1 cut(s)	300
PspGI	CCWGG	2 cut(s)	446, 658
PspPI	GGNCC	3 cut(s)	697, 712, 730
PspPPI	RGGWCCY	1 cut(s)	730
PspXI	VCTCGAGB	1 cut(s)	725
PstNI	CAGNNNCTG	1 cut(s)	336
RruI	TCGCGA	1 cut(s)	737
RsaI	GTAC	2 cut(s)	18, 378
RsaNI	GTAC	2 cut(s)	17, 377
SalI	GTCGAC	2 cut(s)	531, 719
SaqAI	TTAA	4 cut(s)	114, 156, 395, 489
SatI	GCNGC	3 cut(s)	572, 747, 771
Sau3AI	GATC	5 cut(s)	231, 552, 649, 756, 832
Sau96I	GGNCC	3 cut(s)	697, 712, 730
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	6 cut(s)	306, 448, 660, 710, 711, 901
SduI	GDGCHC	1 cut(s)	625
Sfr274I	CTCGAG	1 cut(s)	725
SfuI	TTCGAA	1 cut(s)	6
SinI	GGWCC	1 cut(s)	730
SlaI	CTCGAG	1 cut(s)	725
SmaI	CCCGGG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	494, 725
SmoI	CTYRAG	2 cut(s)	494, 725
Sse9I	AATT	3 cut(s)	157, 344, 392
SsiI	CCGC	4 cut(s)	571, 747, 771, 806
SspMI	CTAG	6 cut(s)	29, 69, 138, 192, 198, 584
StyD4I	CCNGG	6 cut(s)	304, 446, 658, 708, 709, 899
TaaI	ACNGT	3 cut(s)	16, 866, 894
TaqI	TCGA	7 cut(s)	6, 171, 230, 240, 532, 720, 726
TasI	AATT	3 cut(s)	157, 344, 392
TatI	WGTACW	1 cut(s)	376
TauI	GCSGC	3 cut(s)	574, 749, 773
TfiI	GAWTC	2 cut(s)	227, 333
Tru1I	TTAA	4 cut(s)	114, 156, 395, 489
Tru9I	TTAA	4 cut(s)	114, 156, 395, 489
TseFI	GTSAC	1 cut(s)	608
Tsp45I	GTSAC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	69, 405, 444, 516
TspGWI	ACGGA	1 cut(s)	618
TspMI	CCCGGG	1 cut(s)	709
Van91I	CCANNNNNTGG	1 cut(s)	631
VpaK11BI	GGWCC	1 cut(s)	730
VspI	ATTAAT	1 cut(s)	156
XapI	RAATTY	1 cut(s)	344
XhoI	CTCGAG	1 cut(s)	725
XmaI	CCCGGG	1 cut(s)	709
XmiI	GTMKAC	2 cut(s)	532, 720
XmnI	GAANNNNTTC	1 cut(s)	345
XspI	CTAG	6 cut(s)	29, 69, 138, 192, 198, 584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.