Rh6CG033800

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0007184
Physical Location & Seq
Reverse (-)
3142296 .. 3146800
4505 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG033800.1

Sequence Viewer

Length: 1281 bp
ATGGCGGTGGAGTATGAGTGTTGCAGTAGCGGCTTCTTCATTCACATACTGGTAATCGTGTTTCTGGTTTGTTTCGCTGGGCTAATGTCTGGGCTCACCTTGGGCCTCATGTCCCTGAGTCTTGTTGATCTTGAAGTCTTGGCCAAGTCTGGGAAGCCCAACAATCGCAAGCATGCTGCAAAGATATTGCCAGTTGTGAAAAAGCAGCACCTGTTGCTTTGCACCCTACTAATTTGCAATGCTGCTGCAATGGAGGCACTTCCCATTTTCCTGGATGGTCTAGTGCCAGCTTGGGGTGCAATCCTAATTTCGGTGACACTAATTCTTCTGTTTGGTGAGATTATACCACAATCTGTTTGTTCCCGTTATGGTTTGGCGATAGGTGCAGCAGTGACTCCATTTGTCCGTGTCCTTCTGTGGGTCTGCTTTCCTCTTGCATATCCAATTAGCAAGTTATTAGACTATCTTCTCGGCCATGGACATGTAGCTCTGTTTCGCAGAGCGGAGTTGAAAACGCTTGTAGATATGCATGGCAATGAGGCTGGAAAAGGTGGAGAATTGACACATGATGAGACAACAATTATTGCTGGAGCCCTTGAACTCAGTGAGAAAACCGCCCGTGATGCCATGACTCCTATAGCTGAAACTTTTGCAATTGATATCAATGCCAAGCTTGACAGGAATTTGATGAATCTGATAATGGAGAAAGGGCATAGTAGAGTGCCAGTTTACTATGAAGAGCCTACAAACATAATTGGACTTGTCCTGGTCAAAAACTTGTTGACAGTTCATCCAGAAGAAGAAACACCTGTAAAGAATGTCACTATACGCAAGATCCCCAGGGTTCAAGAAACATTGCCGTTGTATGACATACTGAATGAATTTCAGAAAGGTCACAGTCACATGGCTATTGTTATAAGACGGTGCAATACTGTGGAGGAGCAGCCCAATGGCAATGCAGCTGACAGTTCAGTAAAAGAAGTGAAAGTGGACATTGATAGTGAAAAGCCTCCTCAGGAGAAGATTTTGAAGAGCAAAAGATCACTGAACAAATGGAAGAGCTTTCCTAACAGTGGGAATATTTCACAGAGGAGTGGGTCCAGAAGCAAGAAATGGTTCAAGGACATGTATTCAGACATCCTTGAGATAGATAGTGAAGCACTCCCAAAGCTCCCAGAAGAGGAAGTGGCTGTTGGCATTATAACAATGGAAGACGTTATCGAAGAGCTTTTACAGGAGGAGATATTTGATGAAACTGATCATCAGTATGAGGACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

426

Amino Acids

47.35

Weight (kDa)

5.48

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 17 - 189 4.9e-35 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 917, 1202
AccBSI CCGCTC 1 cut(s) 503
AciI CCGC 4 cut(s) 5, 30, 503, 615
AclWI GGATC 1 cut(s) 829
AcoI YGGCCR 2 cut(s) 141, 472
AcsI RAATTY 2 cut(s) 682, 881
AfiI CCNNNNNNNGG 6 cut(s) 150, 293, 310, 418, 1073, 1180
AflIII ACRYGT 2 cut(s) 481, 1125
AgsI TTSAA 6 cut(s) 134, 511, 599, 848, 1030, 1120
AjnI CCWGG 3 cut(s) 270, 765, 839
AjuI GAANNNNNNNTTGG 2 cut(s) 1176, 1208
AluBI AGCT 8 cut(s) 290, 488, 641, 673, 962, 1062, 1171, 1228
AluI AGCT 8 cut(s) 290, 488, 641, 673, 962, 1062, 1171, 1228
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 1 cut(s) 829
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 3 cut(s) 103, 141, 472
ApeKI GCWGC 7 cut(s) 176, 205, 242, 245, 386, 943, 959
ApoI RAATTY 2 cut(s) 682, 881
Asp700I GAANNNNTTC 1 cut(s) 1115
AspS9I GGNCC 2 cut(s) 103, 1098
AsuHPI GGTGA 3 cut(s) 88, 325, 347
AvaII GGWCC 1 cut(s) 1098
AxyI CCTNAGG 1 cut(s) 1014
BalI TGGCCA 1 cut(s) 143
BanII GRGCYC 2 cut(s) 96, 595
BarI GAAGNNNNNNTAC 2 cut(s) 1215, 1247
BbsI GAAGAC 1 cut(s) 1218
BbvI GCAGC 7 cut(s) 163, 217, 229, 232, 398, 955, 971
BccI CCATC 1 cut(s) 269
BceAI ACGGC 1 cut(s) 844
BciT130I CCWGG 3 cut(s) 272, 767, 841
BclI TGATCA 1 cut(s) 1258
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 1 cut(s) 281
BfmI CTRYAG 1 cut(s) 636
BisI GCNGC 8 cut(s) 31, 177, 206, 243, 246, 387, 944, 960
BlsI GCNGC 8 cut(s) 32, 178, 207, 244, 247, 388, 945, 961
Bme1390I CCNGG 3 cut(s) 272, 767, 841
Bme18I GGWCC 1 cut(s) 1098
BmgT120I GGNCC 2 cut(s) 103, 1098
BmiI GGNNCC 2 cut(s) 592, 1099
BmrFI CCNGG 3 cut(s) 272, 767, 841
BmsI GCATC 1 cut(s) 613
BpiI GAAGAC 1 cut(s) 1218
BpmI CTGGAG 1 cut(s) 609
BpuEI CTTGAG 1 cut(s) 1163
BsaJI CCNNGG 4 cut(s) 99, 475, 839, 840
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 6 cut(s) 150, 293, 310, 418, 1073, 1180
Bse1I ACTGG 3 cut(s) 54, 191, 725
Bse21I CCTNAGG 1 cut(s) 1014
Bse3DI GCAATG 5 cut(s) 244, 255, 541, 854, 961
BseBI CCWGG 3 cut(s) 272, 767, 841
BseDI CCNNGG 4 cut(s) 99, 475, 839, 840
BseGI GGATG 3 cut(s) 280, 790, 1137
BseLI CCNNNNNNNGG 6 cut(s) 150, 293, 310, 418, 1073, 1180
BseMI GCAATG 5 cut(s) 244, 255, 541, 854, 961
BseMII CTCAG 3 cut(s) 107, 616, 1028
BseNI ACTGG 3 cut(s) 54, 191, 725
BseRI GAGGAG 4 cut(s) 953, 1002, 1105, 1253
BseXI GCAGC 7 cut(s) 163, 217, 229, 232, 398, 955, 971
BseYI CCCAGC 1 cut(s) 77
BsgI GTGCAG 1 cut(s) 405
BshFI GGCC 3 cut(s) 105, 143, 474
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 6 cut(s) 150, 293, 310, 418, 1073, 1180
BsmAI GTCTC 1 cut(s) 566
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 3 cut(s) 105, 143, 474
Bsp1286I GDGCHC 2 cut(s) 96, 595
Bsp143I GATC 4 cut(s) 127, 834, 1040, 1258
Bsp19I CCATGG 1 cut(s) 475
BspACI CCGC 4 cut(s) 5, 30, 503, 615
BspANI GGCC 3 cut(s) 105, 143, 474
BspCNI CTCAG 3 cut(s) 108, 615, 1027
BspLI GGNNCC 2 cut(s) 592, 1099
BspPI GGATC 1 cut(s) 829
BspQI GCTCTTC 4 cut(s) 732, 1025, 1052, 1218
BsrBI CCGCTC 1 cut(s) 503
BsrDI GCAATG 5 cut(s) 244, 255, 541, 854, 961
BsrI ACTGG 3 cut(s) 54, 191, 725
BssECI CCNNGG 4 cut(s) 99, 475, 839, 840
BssMI GATC 4 cut(s) 127, 834, 1040, 1258
BssT1I CCWWGG 2 cut(s) 99, 475
Bst2UI CCWGG 3 cut(s) 272, 767, 841
Bst4CI ACNGT 6 cut(s) 787, 899, 924, 934, 968, 1073
Bst6I CTCTTC 5 cut(s) 732, 1025, 1052, 1173, 1218
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 170, 174, 288
BstDEI CTNAG 3 cut(s) 116, 602, 1014
BstDSI CCRYGG 1 cut(s) 475
BstF5I GGATG 3 cut(s) 280, 790, 1137
BstKTI GATC 4 cut(s) 130, 837, 1043, 1261
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 4 cut(s) 127, 834, 1040, 1258
BstMWI GCNNNNNNNGC 6 cut(s) 30, 214, 254, 296, 383, 623
BstNI CCWGG 3 cut(s) 272, 767, 841
BstNSI RCATGY 3 cut(s) 176, 485, 1129
BstSCI CCNGG 3 cut(s) 270, 765, 839
BstSFI CTRYAG 1 cut(s) 636
BstV1I GCAGC 7 cut(s) 163, 217, 229, 232, 398, 955, 971
BstV2I GAAGAC 1 cut(s) 1218
BstX2I RGATCY 1 cut(s) 834
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 834
Bsu36I CCTNAGG 1 cut(s) 1014
BsuRI GGCC 3 cut(s) 105, 143, 474
BtgI CCRYGG 1 cut(s) 475
BtsCI GGATG 3 cut(s) 280, 790, 1137
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 4 cut(s) 396, 610, 1043, 1078
Cac8I GCNNGC 3 cut(s) 170, 174, 288
CaiI CAGNNNCTG 1 cut(s) 211
Cfr13I GGNCC 2 cut(s) 103, 1098
CviAII CATG 9 cut(s) 109, 173, 476, 482, 530, 566, 628, 904, 1126
DdeI CTNAG 3 cut(s) 116, 602, 1014
DpnI GATC 4 cut(s) 129, 836, 1042, 1260
DpnII GATC 4 cut(s) 127, 834, 1040, 1258
EaeI YGGCCR 2 cut(s) 141, 472
Eam1104I CTCTTC 5 cut(s) 732, 1025, 1052, 1173, 1218
EarI CTCTTC 5 cut(s) 732, 1025, 1052, 1173, 1218
Eco130I CCWWGG 2 cut(s) 99, 475
Eco24I GRGCYC 2 cut(s) 96, 595
Eco32I GATATC 1 cut(s) 661
Eco47I GGWCC 1 cut(s) 1098
Eco81I CCTNAGG 1 cut(s) 1014
EcoRII CCWGG 3 cut(s) 270, 765, 839
EcoRV GATATC 1 cut(s) 661
EcoT14I CCWWGG 2 cut(s) 99, 475
EcoT22I ATGCAT 1 cut(s) 531
EcoT38I GRGCYC 2 cut(s) 96, 595
ErhI CCWWGG 2 cut(s) 99, 475
FaeI CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1129
FaqI GGGAC 1 cut(s) 97
FatI CATG 9 cut(s) 108, 172, 475, 481, 529, 565, 627, 903, 1125
FbaI TGATCA 1 cut(s) 1258
Fnu4HI GCNGC 8 cut(s) 31, 177, 206, 243, 246, 387, 944, 960
FokI GGATG 3 cut(s) 287, 777, 1124
FriOI GRGCYC 2 cut(s) 96, 595
Fsp4HI GCNGC 8 cut(s) 31, 177, 206, 243, 246, 387, 944, 960
FspBI CTAG 1 cut(s) 281
GluI GCNGC 8 cut(s) 31, 177, 206, 243, 246, 387, 944, 960
GsaI CCCAGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 609
HaeIII GGCC 3 cut(s) 105, 143, 474
Hin1II CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1129
HincII GTYRAC 1 cut(s) 783
HindII GTYRAC 1 cut(s) 783
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 5 cut(s) 118, 394, 631, 691, 1274
HphI GGTGA 3 cut(s) 88, 325, 347
Hpy166II GTNNAC 3 cut(s) 730, 783, 991
Hpy188I TCNGA 3 cut(s) 696, 888, 1135
Hpy188III TCNNGA 5 cut(s) 131, 794, 848, 1016, 1101
Hpy8I GTNNAC 3 cut(s) 730, 783, 991
HpyAV CCTTC 1 cut(s) 422
HpyCH4III ACNGT 6 cut(s) 787, 899, 924, 934, 968, 1073
HpyCH4IV ACGT 1 cut(s) 1215
HpyF10VI GCNNNNNNNGC 6 cut(s) 30, 214, 254, 296, 383, 623
HpyF3I CTNAG 3 cut(s) 116, 602, 1014
HpySE526I ACGT 1 cut(s) 1215
Hsp92II CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1129
Ksp22I TGATCA 1 cut(s) 1258
Kzo9I GATC 4 cut(s) 127, 834, 1040, 1258
LguI GCTCTTC 4 cut(s) 732, 1025, 1052, 1218
LmnI GCTCC 3 cut(s) 590, 940, 1176
Lsp1109I GCAGC 7 cut(s) 163, 217, 229, 232, 398, 955, 971
LweI GCATC 1 cut(s) 613
MaeI CTAG 1 cut(s) 281
MaeII ACGT 1 cut(s) 1215
MaeIII GTNAC 5 cut(s) 313, 391, 820, 893, 899
MalI GATC 4 cut(s) 129, 836, 1042, 1260
MbiI CCGCTC 1 cut(s) 503
MboI GATC 4 cut(s) 127, 834, 1040, 1258
MfeI CAATTG 1 cut(s) 654
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 2 cut(s) 96, 595
MlsI TGGCCA 1 cut(s) 143
MluNI TGGCCA 1 cut(s) 143
MlyI GAGTC 4 cut(s) 127, 388, 625, 1268
Mox20I TGGCCA 1 cut(s) 143
Mph1103I ATGCAT 1 cut(s) 531
MroXI GAANNNNTTC 1 cut(s) 1115
MscI TGGCCA 1 cut(s) 143
MslI CAYNNNNRTG 3 cut(s) 480, 534, 1266
Msp20I TGGCCA 1 cut(s) 143
MspA1I CMGCKG 1 cut(s) 962
MspR9I CCNGG 3 cut(s) 272, 767, 841
MunI CAATTG 1 cut(s) 654
MvaI CCWGG 3 cut(s) 272, 767, 841
MwoI GCNNNNNNNGC 6 cut(s) 30, 214, 254, 296, 383, 623
NcoI CCATGG 1 cut(s) 475
NdeII GATC 4 cut(s) 127, 834, 1040, 1258
NlaIII CATG 9 cut(s) 112, 176, 479, 485, 533, 569, 631, 907, 1129
NlaIV GGNNCC 2 cut(s) 592, 1099
NmeAIII GCCGAG 1 cut(s) 450
NmuCI GTSAC 5 cut(s) 313, 391, 820, 893, 899
NsiI ATGCAT 1 cut(s) 531
NspI RCATGY 3 cut(s) 176, 485, 1129
PaeI GCATGC 1 cut(s) 176
PasI CCCWGGG 1 cut(s) 840
PciI ACATGT 2 cut(s) 481, 1125
PciSI GCTCTTC 4 cut(s) 732, 1025, 1052, 1218
PdmI GAANNNNTTC 1 cut(s) 1115
PfeI GAWTC 1 cut(s) 691
PfoI TCCNGGA 1 cut(s) 270
PkrI GCNGC 8 cut(s) 32, 178, 207, 244, 247, 388, 945, 961
PleI GAGTC 4 cut(s) 126, 388, 625, 1268
PpsI GAGTC 4 cut(s) 126, 388, 625, 1268
PscI ACATGT 2 cut(s) 481, 1125
PsiI TTATAA 2 cut(s) 917, 1202
Psp6I CCWGG 3 cut(s) 270, 765, 839
PspFI CCCAGC 1 cut(s) 77
PspGI CCWGG 3 cut(s) 270, 765, 839
PspN4I GGNNCC 2 cut(s) 592, 1099
PspPI GGNCC 2 cut(s) 103, 1098
PstNI CAGNNNCTG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 834
PvuII CAGCTG 1 cut(s) 962
RseI CAYNNNNRTG 3 cut(s) 480, 534, 1266
SapI GCTCTTC 4 cut(s) 732, 1025, 1052, 1218
SatI GCNGC 8 cut(s) 31, 177, 206, 243, 246, 387, 944, 960
Sau3AI GATC 4 cut(s) 127, 834, 1040, 1258
Sau96I GGNCC 2 cut(s) 103, 1098
SchI GAGTC 4 cut(s) 127, 388, 625, 1268
ScrFI CCNGG 3 cut(s) 272, 767, 841
SduI GDGCHC 2 cut(s) 96, 595
SfaNI GCATC 1 cut(s) 613
SfcI CTRYAG 1 cut(s) 636
SinI GGWCC 1 cut(s) 1098
SmiMI CAYNNNNRTG 3 cut(s) 480, 534, 1266
SmlI CTYRAG 1 cut(s) 1142
SmoI CTYRAG 1 cut(s) 1142
SphI GCATGC 1 cut(s) 176
SsiI CCGC 4 cut(s) 5, 30, 503, 615
SspI AATATT 1 cut(s) 1081
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 3 cut(s) 270, 765, 839
StyI CCWWGG 2 cut(s) 99, 475
TaaI ACNGT 6 cut(s) 787, 899, 924, 934, 968, 1073
TaiI ACGT 1 cut(s) 1218
TaqI TCGA 1 cut(s) 1221
TauI GCSGC 1 cut(s) 33
TfiI GAWTC 1 cut(s) 691
TscAI CASTG 4 cut(s) 396, 610, 1050, 1078
TseFI GTSAC 5 cut(s) 313, 391, 820, 893, 899
TseI GCWGC 7 cut(s) 176, 205, 242, 245, 386, 943, 959
Tsp45I GTSAC 5 cut(s) 313, 391, 820, 893, 899
TspDTI ATGAA 6 cut(s) 28, 704, 750, 779, 894, 1266
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 4 cut(s) 396, 610, 1050, 1078
VpaK11BI GGWCC 1 cut(s) 1098
XapI RAATTY 2 cut(s) 682, 881
XceI RCATGY 3 cut(s) 176, 485, 1129
XmnI GAANNNNTTC 1 cut(s) 1115
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.