Rh6DG031500

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0007184
Physical Location & Seq
Reverse (-)
3061930 .. 3066522
4593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG031500.1

Sequence Viewer

Length: 1137 bp
ATGTTTTTGTGTGTATTTTTGTTGCTGATTGCAGCAAAGATATTGCCAGTTGTGAAAAAGCAGCACCTGTTGCTTTGCACCCTACTAATTTGCAATGCTGCTGCAATGGAGGCACTTCCCATTTTCCTGGATGGTCTAGTGCCAGCTTGGGGTGCAATCCTAATTTCGGTGACACTAATTCTTCTGTTTGGTGAGATTATACCACAATCTGTTTGTTCCCGTTATGGTTTGGCGATAGGTGCAGCAGTGACTCCATTTGTCCGTGTCCTTCTGTGGGTCTGCTTTCCTCTTGCATATCCAATTAGCAAGTTATTAGACTATCTTCTCGGCCATGGACATGTAGCTCTGTTTCGCAGAGCGGAGTTGAAAACGCTTGTAGATATGCATGGCAATGAGGCTGGAAAAGGTGGAGAATTGACACATGATGAGACAACAATTATTGCTGGAGCCCTTGAACTCAGTGAGAAAACCGCCCGTGATGCCATGACTCCTATAGCTGAAACTTTTGCAATTGATATCAATGCCAAGCTTGACAGGAATTTGATGAATCTGATAATGGAGAAAGGGCATAGTAGAGTGCCAGTTTACTATGAAGAGCCTACAAACATAATTGGACTTGTCCTGGTCAAAAACTTGTTGACAGTTCATCCAGAAGAAGAAACACCTGTAAAGAATGTCACTATACGCAAGATCCCCAGGGTTCAAGAAACATTGCCGTTGTATGACATACTGAATGAATTTCAGAAAGGTCACAGTCACATGGCTATTGTTATAAGACGGTGCAATACTGTGGAGGAGCAGCCCAATGGCAATGCAGCTGACAGTTCAGTAAAAGAAGTGAAAGTGGACATTGATAGTGAAAAGCCTCCTCAGGAGAAGATTTTGAAGAGCAAAAGATCACTGAACAAATGGAAGAGCTTTCCTAACAGTGGGAATATTTCACAGAGGAGTGGGTCCAGAAGCAAGAAATGGTTCAAGGACATGTATTCAGACATCCTTGAGATAGATAGTGAAGCACTCCCAAAGCTCCCAGAAGAGGAAGTGGCTGTTGGCATTATAACAATGGAAGACGTTATCGAAGAGCTTTTACAGGAGGAGATATTTGATGAAACTGATCATCAGTATGAGGACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

378

Amino Acids

42.26

Weight (kDa)

5.33

Isoelectric Point (pI)

49.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 11 - 141 2e-24 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 773, 1058
AccBSI CCGCTC 1 cut(s) 359
AciI CCGC 2 cut(s) 359, 471
AclWI GGATC 1 cut(s) 685
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 2 cut(s) 538, 737
AfiI CCNNNNNNNGG 5 cut(s) 149, 166, 274, 929, 1036
AflIII ACRYGT 2 cut(s) 337, 981
AgsI TTSAA 5 cut(s) 367, 455, 704, 886, 976
AjnI CCWGG 3 cut(s) 126, 621, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 1032, 1064
AluBI AGCT 8 cut(s) 146, 344, 497, 529, 818, 918, 1027, 1084
AluI AGCT 8 cut(s) 146, 344, 497, 529, 818, 918, 1027, 1084
Alw26I GTCTC 1 cut(s) 422
AlwI GGATC 1 cut(s) 685
AlwNI CAGNNNCTG 1 cut(s) 67
AoxI GGCC 1 cut(s) 328
ApeKI GCWGC 7 cut(s) 32, 61, 98, 101, 242, 799, 815
ApoI RAATTY 2 cut(s) 538, 737
Asp700I GAANNNNTTC 1 cut(s) 971
AspS9I GGNCC 1 cut(s) 954
AsuHPI GGTGA 2 cut(s) 181, 203
AvaII GGWCC 1 cut(s) 954
AxyI CCTNAGG 1 cut(s) 870
BanII GRGCYC 1 cut(s) 451
BarI GAAGNNNNNNTAC 2 cut(s) 1071, 1103
BbsI GAAGAC 1 cut(s) 1074
BbvI GCAGC 7 cut(s) 44, 73, 85, 88, 254, 811, 827
BccI CCATC 1 cut(s) 125
BceAI ACGGC 1 cut(s) 700
BciT130I CCWGG 3 cut(s) 128, 623, 697
BclI TGATCA 1 cut(s) 1114
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 1 cut(s) 137
BfmI CTRYAG 1 cut(s) 492
BisI GCNGC 7 cut(s) 33, 62, 99, 102, 243, 800, 816
BlsI GCNGC 7 cut(s) 34, 63, 100, 103, 244, 801, 817
Bme1390I CCNGG 3 cut(s) 128, 623, 697
Bme18I GGWCC 1 cut(s) 954
BmgT120I GGNCC 1 cut(s) 954
BmiI GGNNCC 2 cut(s) 448, 955
BmrFI CCNGG 3 cut(s) 128, 623, 697
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 1 cut(s) 1074
BpmI CTGGAG 1 cut(s) 465
BpuEI CTTGAG 1 cut(s) 1019
BsaJI CCNNGG 3 cut(s) 331, 695, 696
Bsc4I CCNNNNNNNGG 5 cut(s) 149, 166, 274, 929, 1036
Bse1I ACTGG 2 cut(s) 47, 581
Bse21I CCTNAGG 1 cut(s) 870
Bse3DI GCAATG 5 cut(s) 100, 111, 397, 710, 817
BseBI CCWGG 3 cut(s) 128, 623, 697
BseDI CCNNGG 3 cut(s) 331, 695, 696
BseGI GGATG 3 cut(s) 136, 646, 993
BseLI CCNNNNNNNGG 5 cut(s) 149, 166, 274, 929, 1036
BseMI GCAATG 5 cut(s) 100, 111, 397, 710, 817
BseMII CTCAG 2 cut(s) 472, 884
BseNI ACTGG 2 cut(s) 47, 581
BseRI GAGGAG 4 cut(s) 809, 858, 961, 1109
BseXI GCAGC 7 cut(s) 44, 73, 85, 88, 254, 811, 827
BsgI GTGCAG 1 cut(s) 261
BshFI GGCC 1 cut(s) 330
BslI CCNNNNNNNGG 5 cut(s) 149, 166, 274, 929, 1036
BsmAI GTCTC 1 cut(s) 422
BsnI GGCC 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 451
Bsp143I GATC 3 cut(s) 690, 896, 1114
Bsp19I CCATGG 1 cut(s) 331
BspACI CCGC 2 cut(s) 359, 471
BspANI GGCC 1 cut(s) 330
BspCNI CTCAG 2 cut(s) 471, 883
BspLI GGNNCC 2 cut(s) 448, 955
BspPI GGATC 1 cut(s) 685
BspQI GCTCTTC 4 cut(s) 588, 881, 908, 1074
BsrBI CCGCTC 1 cut(s) 359
BsrDI GCAATG 5 cut(s) 100, 111, 397, 710, 817
BsrI ACTGG 2 cut(s) 47, 581
BssECI CCNNGG 3 cut(s) 331, 695, 696
BssMI GATC 3 cut(s) 690, 896, 1114
BssT1I CCWWGG 1 cut(s) 331
Bst2UI CCWGG 3 cut(s) 128, 623, 697
Bst4CI ACNGT 6 cut(s) 643, 755, 780, 790, 824, 929
Bst6I CTCTTC 5 cut(s) 588, 881, 908, 1029, 1074
BstAPI GCANNNNNTGC 1 cut(s) 70
BstC8I GCNNGC 1 cut(s) 144
BstDEI CTNAG 2 cut(s) 458, 870
BstDSI CCRYGG 1 cut(s) 331
BstF5I GGATG 3 cut(s) 136, 646, 993
BstKTI GATC 3 cut(s) 693, 899, 1117
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 3 cut(s) 690, 896, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 70, 110, 152, 239, 479
BstNI CCWGG 3 cut(s) 128, 623, 697
BstNSI RCATGY 2 cut(s) 341, 985
BstSCI CCNGG 3 cut(s) 126, 621, 695
BstSFI CTRYAG 1 cut(s) 492
BstV1I GCAGC 7 cut(s) 44, 73, 85, 88, 254, 811, 827
BstV2I GAAGAC 1 cut(s) 1074
BstX2I RGATCY 1 cut(s) 690
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 690
Bsu36I CCTNAGG 1 cut(s) 870
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 331
BtsCI GGATG 3 cut(s) 136, 646, 993
BtsI GCAGTG 1 cut(s) 252
BtsIMutI CAGTG 4 cut(s) 252, 466, 899, 934
Cac8I GCNNGC 1 cut(s) 144
CaiI CAGNNNCTG 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 954
CviAII CATG 7 cut(s) 332, 338, 386, 422, 484, 760, 982
DdeI CTNAG 2 cut(s) 458, 870
DpnI GATC 3 cut(s) 692, 898, 1116
DpnII GATC 3 cut(s) 690, 896, 1114
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 5 cut(s) 588, 881, 908, 1029, 1074
EarI CTCTTC 5 cut(s) 588, 881, 908, 1029, 1074
Eco130I CCWWGG 1 cut(s) 331
Eco24I GRGCYC 1 cut(s) 451
Eco32I GATATC 1 cut(s) 517
Eco47I GGWCC 1 cut(s) 954
Eco81I CCTNAGG 1 cut(s) 870
EcoRII CCWGG 3 cut(s) 126, 621, 695
EcoRV GATATC 1 cut(s) 517
EcoT14I CCWWGG 1 cut(s) 331
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 331
FaeI CATG 7 cut(s) 335, 341, 389, 425, 487, 763, 985
FatI CATG 7 cut(s) 331, 337, 385, 421, 483, 759, 981
FbaI TGATCA 1 cut(s) 1114
Fnu4HI GCNGC 7 cut(s) 33, 62, 99, 102, 243, 800, 816
FokI GGATG 3 cut(s) 143, 633, 980
FriOI GRGCYC 1 cut(s) 451
Fsp4HI GCNGC 7 cut(s) 33, 62, 99, 102, 243, 800, 816
FspBI CTAG 1 cut(s) 137
GluI GCNGC 7 cut(s) 33, 62, 99, 102, 243, 800, 816
GsuI CTGGAG 1 cut(s) 465
HaeIII GGCC 1 cut(s) 330
Hin1II CATG 7 cut(s) 335, 341, 389, 425, 487, 763, 985
HincII GTYRAC 1 cut(s) 639
HindII GTYRAC 1 cut(s) 639
HindIII AAGCTT 1 cut(s) 527
HinfI GANTC 4 cut(s) 250, 487, 547, 1130
HphI GGTGA 2 cut(s) 181, 203
Hpy166II GTNNAC 3 cut(s) 586, 639, 847
Hpy188I TCNGA 3 cut(s) 552, 744, 991
Hpy188III TCNNGA 4 cut(s) 650, 704, 872, 957
Hpy8I GTNNAC 3 cut(s) 586, 639, 847
HpyAV CCTTC 1 cut(s) 278
HpyCH4III ACNGT 6 cut(s) 643, 755, 780, 790, 824, 929
HpyCH4IV ACGT 1 cut(s) 1071
HpyF10VI GCNNNNNNNGC 5 cut(s) 70, 110, 152, 239, 479
HpyF3I CTNAG 2 cut(s) 458, 870
HpySE526I ACGT 1 cut(s) 1071
Hsp92II CATG 7 cut(s) 335, 341, 389, 425, 487, 763, 985
Ksp22I TGATCA 1 cut(s) 1114
Kzo9I GATC 3 cut(s) 690, 896, 1114
LguI GCTCTTC 4 cut(s) 588, 881, 908, 1074
LmnI GCTCC 3 cut(s) 446, 796, 1032
Lsp1109I GCAGC 7 cut(s) 44, 73, 85, 88, 254, 811, 827
LweI GCATC 1 cut(s) 469
MaeI CTAG 1 cut(s) 137
MaeII ACGT 1 cut(s) 1071
MaeIII GTNAC 5 cut(s) 169, 247, 676, 749, 755
MalI GATC 3 cut(s) 692, 898, 1116
MbiI CCGCTC 1 cut(s) 359
MboI GATC 3 cut(s) 690, 896, 1114
MfeI CAATTG 1 cut(s) 510
MflI RGATCY 1 cut(s) 690
MhlI GDGCHC 1 cut(s) 451
MlyI GAGTC 3 cut(s) 244, 481, 1124
Mph1103I ATGCAT 1 cut(s) 387
MroXI GAANNNNTTC 1 cut(s) 971
MslI CAYNNNNRTG 3 cut(s) 336, 390, 1122
MspA1I CMGCKG 1 cut(s) 818
MspR9I CCNGG 3 cut(s) 128, 623, 697
MunI CAATTG 1 cut(s) 510
MvaI CCWGG 3 cut(s) 128, 623, 697
MwoI GCNNNNNNNGC 5 cut(s) 70, 110, 152, 239, 479
NcoI CCATGG 1 cut(s) 331
NdeII GATC 3 cut(s) 690, 896, 1114
NlaIII CATG 7 cut(s) 335, 341, 389, 425, 487, 763, 985
NlaIV GGNNCC 2 cut(s) 448, 955
NmeAIII GCCGAG 1 cut(s) 306
NmuCI GTSAC 5 cut(s) 169, 247, 676, 749, 755
NsiI ATGCAT 1 cut(s) 387
NspI RCATGY 2 cut(s) 341, 985
PasI CCCWGGG 1 cut(s) 696
PciI ACATGT 2 cut(s) 337, 981
PciSI GCTCTTC 4 cut(s) 588, 881, 908, 1074
PdmI GAANNNNTTC 1 cut(s) 971
PfeI GAWTC 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 126
PkrI GCNGC 7 cut(s) 34, 63, 100, 103, 244, 801, 817
PleI GAGTC 3 cut(s) 244, 481, 1124
PpsI GAGTC 3 cut(s) 244, 481, 1124
PscI ACATGT 2 cut(s) 337, 981
PsiI TTATAA 2 cut(s) 773, 1058
Psp6I CCWGG 3 cut(s) 126, 621, 695
PspGI CCWGG 3 cut(s) 126, 621, 695
PspN4I GGNNCC 2 cut(s) 448, 955
PspPI GGNCC 1 cut(s) 954
PstNI CAGNNNCTG 1 cut(s) 67
PsuI RGATCY 1 cut(s) 690
PvuII CAGCTG 1 cut(s) 818
RseI CAYNNNNRTG 3 cut(s) 336, 390, 1122
SapI GCTCTTC 4 cut(s) 588, 881, 908, 1074
SatI GCNGC 7 cut(s) 33, 62, 99, 102, 243, 800, 816
Sau3AI GATC 3 cut(s) 690, 896, 1114
Sau96I GGNCC 1 cut(s) 954
SchI GAGTC 3 cut(s) 244, 481, 1124
ScrFI CCNGG 3 cut(s) 128, 623, 697
SduI GDGCHC 1 cut(s) 451
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 492
SinI GGWCC 1 cut(s) 954
SmiMI CAYNNNNRTG 3 cut(s) 336, 390, 1122
SmlI CTYRAG 1 cut(s) 998
SmoI CTYRAG 1 cut(s) 998
SsiI CCGC 2 cut(s) 359, 471
SspI AATATT 1 cut(s) 937
SspMI CTAG 1 cut(s) 137
StyD4I CCNGG 3 cut(s) 126, 621, 695
StyI CCWWGG 1 cut(s) 331
TaaI ACNGT 6 cut(s) 643, 755, 780, 790, 824, 929
TaiI ACGT 1 cut(s) 1074
TaqI TCGA 1 cut(s) 1077
TfiI GAWTC 1 cut(s) 547
TscAI CASTG 4 cut(s) 252, 466, 906, 934
TseFI GTSAC 5 cut(s) 169, 247, 676, 749, 755
TseI GCWGC 7 cut(s) 32, 61, 98, 101, 242, 799, 815
Tsp45I GTSAC 5 cut(s) 169, 247, 676, 749, 755
TspDTI ATGAA 5 cut(s) 560, 606, 635, 750, 1122
TspGWI ACGGA 1 cut(s) 251
TspRI CASTG 4 cut(s) 252, 466, 906, 934
VpaK11BI GGWCC 1 cut(s) 954
XapI RAATTY 2 cut(s) 538, 737
XceI RCATGY 2 cut(s) 341, 985
XmnI GAANNNNTTC 1 cut(s) 971
XspI CTAG 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.