Rroxscaffold_7G00214260

DUF21 domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007184
Physical Location & Seq
Forward (+)
64891036 .. 64892415
1380 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00214260.1

Sequence Viewer

Length: 252 bp
ATGTCTGGGCTCACCTTGGGCCTCATGTCCCTGAGTCTCGTCGATCTTGAAGTCTTGGCCAAGTCAGGGAAGCCCAGCAGTCGCAAGCATGCTGCAAAGATATTGCCAGTTGTGAAAAAGCAGCACCTGTTGCTTTGCACCCTACTAATTTGCAATGCTGCTGCAATGAGAGTAAATGATATTGATGCACTTCCCATTTTCCTGGATGGTTTAGTGCCAGCTTGGGGTGCAATTCTAATTTCGGTGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

83

Amino Acids

8.78

Weight (kDa)

9.18

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 1 - 56 3.8e-07 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 57
AfiI CCNNNNNNNGG 2 cut(s) 66, 224
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 41
AlwNI CAGNNNCTG 1 cut(s) 127
AoxI GGCC 2 cut(s) 19, 57
ApeKI GCWGC 4 cut(s) 92, 121, 158, 161
AspS9I GGNCC 1 cut(s) 19
AsuHPI GGTGA 1 cut(s) 4
BalI TGGCCA 1 cut(s) 59
BanII GRGCYC 1 cut(s) 12
BbvI GCAGC 4 cut(s) 79, 133, 145, 148
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 41
BisI GCNGC 4 cut(s) 93, 122, 159, 162
BlsI GCNGC 4 cut(s) 94, 123, 160, 163
Bme1390I CCNGG 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 19
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 175
BsaJI CCNNGG 1 cut(s) 15
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 224
Bse1I ACTGG 1 cut(s) 107
Bse3DI GCAATG 2 cut(s) 160, 171
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 15
BseGI GGATG 1 cut(s) 211
BseLI CCNNNNNNNGG 2 cut(s) 66, 224
BseMI GCAATG 2 cut(s) 160, 171
BseMII CTCAG 1 cut(s) 23
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 4 cut(s) 79, 133, 145, 148
BseYI CCCAGC 1 cut(s) 74
BshFI GGCC 2 cut(s) 21, 59
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 2 cut(s) 66, 224
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 2 cut(s) 21, 59
Bsp1286I GDGCHC 1 cut(s) 12
Bsp143I GATC 1 cut(s) 43
BspANI GGCC 2 cut(s) 21, 59
BspCNI CTCAG 1 cut(s) 24
BsrDI GCAATG 2 cut(s) 160, 171
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 1 cut(s) 15
BssMI GATC 1 cut(s) 43
BssT1I CCWWGG 1 cut(s) 15
Bst2UI CCWGG 1 cut(s) 203
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 3 cut(s) 86, 90, 219
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 211
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 1 cut(s) 43
BstMWI GCNNNNNNNGC 2 cut(s) 130, 227
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 92
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 79, 133, 145, 148
BstXI CCANNNNNNTGG 1 cut(s) 202
BsuRI GGCC 2 cut(s) 21, 59
BtsCI GGATG 1 cut(s) 211
Cac8I GCNNGC 3 cut(s) 86, 90, 219
CaiI CAGNNNCTG 1 cut(s) 127
Cfr13I GGNCC 1 cut(s) 19
CviAII CATG 2 cut(s) 25, 89
CviJI RGCY 5 cut(s) 10, 21, 59, 73, 221
CviKI_1 RGCY 5 cut(s) 10, 21, 59, 73, 221
DdeI CTNAG 1 cut(s) 32
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
EaeI YGGCCR 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 15
EcoT38I GRGCYC 1 cut(s) 12
ErhI CCWWGG 1 cut(s) 15
FaeI CATG 2 cut(s) 28, 92
FaiI YATR 3 cut(s) 26, 90, 250
FaqI GGGAC 1 cut(s) 13
FatI CATG 2 cut(s) 24, 88
Fnu4HI GCNGC 4 cut(s) 93, 122, 159, 162
FokI GGATG 1 cut(s) 218
FriOI GRGCYC 1 cut(s) 12
Fsp4HI GCNGC 4 cut(s) 93, 122, 159, 162
GluI GCNGC 4 cut(s) 93, 122, 159, 162
GsaI CCCAGC 1 cut(s) 78
HaeIII GGCC 2 cut(s) 21, 59
Hin1II CATG 2 cut(s) 28, 92
HinfI GANTC 1 cut(s) 34
HphI GGTGA 1 cut(s) 4
Hpy188III TCNNGA 1 cut(s) 47
Hpy99I CGWCG 1 cut(s) 44
HpyCH4V TGCA 6 cut(s) 95, 138, 153, 164, 188, 230
HpyF10VI GCNNNNNNNGC 2 cut(s) 130, 227
HpyF3I CTNAG 1 cut(s) 32
Hsp92II CATG 2 cut(s) 28, 92
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 8 cut(s) 44, 51, 88, 120, 140, 188, 215, 231
Lsp1109I GCAGC 4 cut(s) 79, 133, 145, 148
LweI GCATC 1 cut(s) 175
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 12
MlsI TGGCCA 1 cut(s) 59
MluCI AATT 3 cut(s) 147, 231, 237
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 43
MnlI CCTC 1 cut(s) 32
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 203
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 130, 227
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 28, 92
NmuCI GTSAC 1 cut(s) 244
NspI RCATGY 1 cut(s) 92
PaeI GCATGC 1 cut(s) 92
PfoI TCCNGGA 1 cut(s) 201
PkrI GCNGC 4 cut(s) 94, 123, 160, 163
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 1 cut(s) 74
PspGI CCWGG 1 cut(s) 201
PspPI GGNCC 1 cut(s) 19
PstNI CAGNNNCTG 1 cut(s) 127
SatI GCNGC 4 cut(s) 93, 122, 159, 162
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 19
SchI GAGTC 1 cut(s) 43
ScrFI CCNGG 1 cut(s) 203
SduI GDGCHC 1 cut(s) 12
SetI ASST 3 cut(s) 17, 129, 223
SfaNI GCATC 1 cut(s) 175
SphI GCATGC 1 cut(s) 92
Sse9I AATT 3 cut(s) 147, 231, 237
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 1 cut(s) 15
TaqI TCGA 1 cut(s) 42
TasI AATT 3 cut(s) 147, 231, 237
TseFI GTSAC 1 cut(s) 244
TseI GCWGC 4 cut(s) 92, 121, 158, 161
Tsp45I GTSAC 1 cut(s) 244
XceI RCATGY 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.