Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004577.1

Orthogroup ID

OG0007184

Physical Location & Seq

Genomic Coordinates Reverse (-)

78818 .. 82016

Gene Structure 3199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004577.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

atgtctgggctcaccttgggcctcatgtccctgagcctcgtcgatcttgaagtcttggccaagtcagggaagcccagcagtcgaaagcatgctgcaaagatattgccagttgtgaaaaagcagcacctgttgctttgcaccctactaatttgcaatgctgctgcgatggaggcacttcccattttcctggatggtttagtgccagcttggggtgcaattctaatttcggtgacactaattcttctgtttggtgagattataccacaatctgtttgttcccgttatggtttggcgataggtgcagcagtgactccatttgtccgtgtccttctgtgggtctgctttcctcttgcatatccaattagcaagttattagactatcttctcggccatggacatgtagctctgtttcgcagagcggagttgaaaacgcttgtagatatgcatggcaatgaggccggaaaaggtggagaattgacacatgatgagacaacaattattgctggagcactcgaactcagtgagaaaactgcccgtgacgccatgactcctatagctgaaacttttgcaattgatatcaatgccaagcttgacaggaatttgatgaatctgataatggagaaagggcatagtagagtgccagtttactatgaagagcctacaaacataattggacttgtcctggtcaaaaacttgttgacagttcatccagaagaggaaacacctgtaaagaatgtcactatacgcaagatcccaagggttcgagaaacattgccgttgtatgacattctgaatgaatttcagaaaggtcacagtcacatggctattgttataagacggtgcaatactgaggagcagcccaatggcaatacagctgacagtccagtgaaagaagtgaaagtggacattgatggtgaaaagcctcctcaggagaagattttgaagagcaaaagatcactgaacaaatggaagagctttccgaacagtgggaatatttcacagaggagtgggtccagaagcaagaaatggtccaaggacatgtattcagacatccttgagatagatagtgaagcactcccaaagctcccagaagaggaagtggctgttggcattataacaatggaagacgttatcgaagagcttttacaggaggagatatttgatgaaactgatcatcagtatgaggactcatactcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF21

Protein Analysis

399

Amino Acids

44.33

Weight (kDa)

5.65

Isoelectric Point (pI)

50.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007184)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14520 AT2G14520 AT2G14520 AT2G14520 AT4G33700
fragaria_vesca	FvH4_2g02720
malus_domestica	MD05G1110800.v1.1 MD10G1114300.v1.1
prunus_persica	Prupe.8G155800_v2.0.a1 Prupe.8G155800_v2.0.a1 Prupe.8G155800_v2.0.a1
pyrus_communis	pycom05g10680 pycom10g09870
rosa_chinensis	RchiOBHm_Chr6g0247171
rosa_laevigata	RLG00000015216
rosa_multiflora	Rmu_sc0004577.1_g000021
rosa_roxburghii	Rroxscaffold_2G00111840 Rroxscaffold_7G00214260 Rroxscaffold_7G00214290
rosa_rugosa	Rorug05G0523900
rosa_samantha	Rh6AG038200 Rh6BG033100 Rh6CG033800 Rh6DG031500
rosa_wichuraiana	Rw6G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	833, 1115
AccBSI	CCGCTC	1 cut(s)	419
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	1 cut(s)	745
AcoI	YGGCCR	2 cut(s)	57, 388
AcsI	RAATTY	2 cut(s)	598, 797
AcyI	GRCGYC	1 cut(s)	540
AfiI	CCNNNNNNNGG	5 cut(s)	66, 209, 334, 986, 1093
AflIII	ACRYGT	2 cut(s)	397, 1038
AgsI	TTSAA	3 cut(s)	50, 427, 943
AjnI	CCWGG	2 cut(s)	186, 681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1089, 1121
AluBI	AGCT	8 cut(s)	206, 404, 557, 589, 875, 975, 1084, 1141
AluI	AGCT	8 cut(s)	206, 404, 557, 589, 875, 975, 1084, 1141
Alw21I	GWGCWC	1 cut(s)	511
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	1 cut(s)	745
AlwNI	CAGNNNCTG	1 cut(s)	127
AoxI	GGCC	4 cut(s)	19, 57, 388, 456
ApeKI	GCWGC	6 cut(s)	92, 121, 158, 161, 302, 856
ApoI	RAATTY	2 cut(s)	598, 797
AspS9I	GGNCC	3 cut(s)	19, 1011, 1029
AsuHPI	GGTGA	4 cut(s)	4, 241, 263, 926
AvaII	GGWCC	2 cut(s)	1011, 1029
AxyI	CCTNAGG	1 cut(s)	927
BalI	TGGCCA	1 cut(s)	59
BanII	GRGCYC	1 cut(s)	12
BarI	GAAGNNNNNNTAC	2 cut(s)	1128, 1160
BbsI	GAAGAC	1 cut(s)	1131
Bbv12I	GWGCWC	1 cut(s)	511
BbvI	GCAGC	6 cut(s)	79, 133, 145, 148, 314, 868
BccI	CCATC	3 cut(s)	160, 185, 905
BceAI	ACGGC	1 cut(s)	760
BciT130I	CCWGG	2 cut(s)	188, 683
BclI	TGATCA	1 cut(s)	1171
BcoDI	GTCTC	1 cut(s)	482
BfmI	CTRYAG	1 cut(s)	552
BisI	GCNGC	6 cut(s)	93, 122, 159, 162, 303, 857
BlsI	GCNGC	6 cut(s)	94, 123, 160, 163, 304, 858
Bme1390I	CCNGG	2 cut(s)	188, 683
Bme18I	GGWCC	2 cut(s)	1011, 1029
BmgT120I	GGNCC	3 cut(s)	19, 1011, 1029
BmiI	GGNNCC	1 cut(s)	1012
BmrFI	CCNGG	2 cut(s)	188, 683
BpiI	GAAGAC	1 cut(s)	1131
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	1076
BsaHI	GRCGYC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	15, 391, 755, 1032
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 209, 334, 986, 1093
Bse1I	ACTGG	3 cut(s)	107, 641, 884
Bse21I	CCTNAGG	1 cut(s)	927
Bse3DI	GCAATG	3 cut(s)	160, 457, 770
BseBI	CCWGG	2 cut(s)	188, 683
BseDI	CCNNGG	4 cut(s)	15, 391, 755, 1032
BseGI	GGATG	3 cut(s)	196, 706, 1050
BseLI	CCNNNNNNNGG	5 cut(s)	66, 209, 334, 986, 1093
BseMI	GCAATG	3 cut(s)	160, 457, 770
BseMII	CTCAG	4 cut(s)	23, 532, 840, 941
BseNI	ACTGG	3 cut(s)	107, 641, 884
BseRI	GAGGAG	4 cut(s)	866, 915, 1018, 1166
BseXI	GCAGC	6 cut(s)	79, 133, 145, 148, 314, 868
BseYI	CCCAGC	1 cut(s)	74
BsgI	GTGCAG	1 cut(s)	321
BshFI	GGCC	4 cut(s)	21, 59, 390, 458
BsiHKAI	GWGCWC	1 cut(s)	511
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	13
BslI	CCNNNNNNNGG	5 cut(s)	66, 209, 334, 986, 1093
BsmAI	GTCTC	1 cut(s)	482
BsmFI	GGGAC	1 cut(s)	13
BsnI	GGCC	4 cut(s)	21, 59, 390, 458
Bsp1286I	GDGCHC	2 cut(s)	12, 511
Bsp143I	GATC	4 cut(s)	43, 750, 953, 1171
Bsp19I	CCATGG	1 cut(s)	391
BspACI	CCGC	1 cut(s)	419
BspANI	GGCC	4 cut(s)	21, 59, 390, 458
BspCNI	CTCAG	4 cut(s)	24, 531, 841, 940
BspLI	GGNNCC	1 cut(s)	1012
BspPI	GGATC	1 cut(s)	745
BspQI	GCTCTTC	4 cut(s)	648, 938, 965, 1131
BsrBI	CCGCTC	1 cut(s)	419
BsrDI	GCAATG	3 cut(s)	160, 457, 770
BsrI	ACTGG	3 cut(s)	107, 641, 884
BssECI	CCNNGG	4 cut(s)	15, 391, 755, 1032
BssMI	GATC	4 cut(s)	43, 750, 953, 1171
BssNI	GRCGYC	1 cut(s)	540
BssT1I	CCWWGG	4 cut(s)	15, 391, 755, 1032
Bst2UI	CCWGG	2 cut(s)	188, 683
Bst4CI	ACNGT	5 cut(s)	703, 815, 840, 881, 986
Bst6I	CTCTTC	6 cut(s)	648, 708, 938, 965, 1086, 1131
BstACI	GRCGYC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	90, 204
BstDEI	CTNAG	4 cut(s)	32, 518, 849, 927
BstDSI	CCRYGG	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	196, 706, 1050
BstKTI	GATC	4 cut(s)	46, 753, 956, 1174
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	43, 750, 953, 1171
BstMWI	GCNNNNNNNGC	5 cut(s)	130, 170, 212, 299, 539
BstNI	CCWGG	2 cut(s)	188, 683
BstNSI	RCATGY	3 cut(s)	92, 401, 1042
BstSCI	CCNGG	2 cut(s)	186, 681
BstSFI	CTRYAG	1 cut(s)	552
BstV1I	GCAGC	6 cut(s)	79, 133, 145, 148, 314, 868
BstV2I	GAAGAC	1 cut(s)	1131
BstX2I	RGATCY	1 cut(s)	750
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	750
Bsu36I	CCTNAGG	1 cut(s)	927
BsuRI	GGCC	4 cut(s)	21, 59, 390, 458
BtgI	CCRYGG	1 cut(s)	391
BtgZI	GCGATG	1 cut(s)	179
BtsCI	GGATG	3 cut(s)	196, 706, 1050
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	5 cut(s)	312, 526, 891, 956, 991
Cac8I	GCNNGC	2 cut(s)	90, 204
CaiI	CAGNNNCTG	1 cut(s)	127
Cfr13I	GGNCC	3 cut(s)	19, 1011, 1029
CseI	GACGC	1 cut(s)	548
CviAII	CATG	9 cut(s)	25, 89, 392, 398, 446, 482, 544, 820, 1039
DdeI	CTNAG	4 cut(s)	32, 518, 849, 927
DpnI	GATC	4 cut(s)	45, 752, 955, 1173
DpnII	GATC	4 cut(s)	43, 750, 953, 1171
EaeI	YGGCCR	2 cut(s)	57, 388
Eam1104I	CTCTTC	6 cut(s)	648, 708, 938, 965, 1086, 1131
EarI	CTCTTC	6 cut(s)	648, 708, 938, 965, 1086, 1131
Eco130I	CCWWGG	4 cut(s)	15, 391, 755, 1032
Eco24I	GRGCYC	1 cut(s)	12
Eco32I	GATATC	1 cut(s)	577
Eco47I	GGWCC	2 cut(s)	1011, 1029
Eco81I	CCTNAGG	1 cut(s)	927
EcoRII	CCWGG	2 cut(s)	186, 681
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	4 cut(s)	15, 391, 755, 1032
EcoT22I	ATGCAT	1 cut(s)	447
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	4 cut(s)	15, 391, 755, 1032
FaeI	CATG	9 cut(s)	28, 92, 395, 401, 449, 485, 547, 823, 1042
FaqI	GGGAC	1 cut(s)	13
FatI	CATG	9 cut(s)	24, 88, 391, 397, 445, 481, 543, 819, 1038
FbaI	TGATCA	1 cut(s)	1171
Fnu4HI	GCNGC	6 cut(s)	93, 122, 159, 162, 303, 857
FokI	GGATG	3 cut(s)	203, 693, 1037
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	6 cut(s)	93, 122, 159, 162, 303, 857
GluI	GCNGC	6 cut(s)	93, 122, 159, 162, 303, 857
GsaI	CCCAGC	1 cut(s)	78
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	21, 59, 390, 458
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	1 cut(s)	548
Hin1I	GRCGYC	1 cut(s)	540
Hin1II	CATG	9 cut(s)	28, 92, 395, 401, 449, 485, 547, 823, 1042
HincII	GTYRAC	1 cut(s)	699
HindII	GTYRAC	1 cut(s)	699
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	4 cut(s)	310, 547, 607, 1187
HpaII	CCGG	1 cut(s)	459
HphI	GGTGA	4 cut(s)	4, 241, 263, 926
Hpy166II	GTNNAC	3 cut(s)	646, 699, 904
Hpy188I	TCNGA	5 cut(s)	612, 792, 804, 981, 1048
Hpy188III	TCNNGA	5 cut(s)	47, 710, 764, 929, 1014
Hpy8I	GTNNAC	3 cut(s)	646, 699, 904
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	338
HpyCH4III	ACNGT	5 cut(s)	703, 815, 840, 881, 986
HpyCH4IV	ACGT	1 cut(s)	1128
HpyCH4V	TGCA	9 cut(s)	95, 138, 153, 215, 302, 353, 445, 569, 843
HpyF10VI	GCNNNNNNNGC	5 cut(s)	130, 170, 212, 299, 539
HpyF3I	CTNAG	4 cut(s)	32, 518, 849, 927
HpySE526I	ACGT	1 cut(s)	1128
Hsp92I	GRCGYC	1 cut(s)	540
Hsp92II	CATG	9 cut(s)	28, 92, 395, 401, 449, 485, 547, 823, 1042
Ksp22I	TGATCA	1 cut(s)	1171
Kzo9I	GATC	4 cut(s)	43, 750, 953, 1171
LguI	GCTCTTC	4 cut(s)	648, 938, 965, 1131
LmnI	GCTCC	3 cut(s)	506, 853, 1089
Lsp1109I	GCAGC	6 cut(s)	79, 133, 145, 148, 314, 868
MaeII	ACGT	1 cut(s)	1128
MaeIII	GTNAC	6 cut(s)	229, 307, 536, 736, 809, 815
MalI	GATC	4 cut(s)	45, 752, 955, 1173
MbiI	CCGCTC	1 cut(s)	419
MboI	GATC	4 cut(s)	43, 750, 953, 1171
MfeI	CAATTG	1 cut(s)	570
MflI	RGATCY	1 cut(s)	750
MhlI	GDGCHC	2 cut(s)	12, 511
MlsI	TGGCCA	1 cut(s)	59
MluNI	TGGCCA	1 cut(s)	59
MlyI	GAGTC	3 cut(s)	304, 541, 1181
Mox20I	TGGCCA	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	447
MscI	TGGCCA	1 cut(s)	59
MslI	CAYNNNNRTG	3 cut(s)	396, 450, 1179
Msp20I	TGGCCA	1 cut(s)	59
MspA1I	CMGCKG	1 cut(s)	875
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	2 cut(s)	188, 683
MunI	CAATTG	1 cut(s)	570
MvaI	CCWGG	2 cut(s)	188, 683
MwoI	GCNNNNNNNGC	5 cut(s)	130, 170, 212, 299, 539
NcoI	CCATGG	1 cut(s)	391
NdeII	GATC	4 cut(s)	43, 750, 953, 1171
NlaIII	CATG	9 cut(s)	28, 92, 395, 401, 449, 485, 547, 823, 1042
NlaIV	GGNNCC	1 cut(s)	1012
NmeAIII	GCCGAG	1 cut(s)	366
NmuCI	GTSAC	6 cut(s)	229, 307, 536, 736, 809, 815
NsiI	ATGCAT	1 cut(s)	447
NspI	RCATGY	3 cut(s)	92, 401, 1042
PaeI	GCATGC	1 cut(s)	92
PciI	ACATGT	2 cut(s)	397, 1038
PciSI	GCTCTTC	4 cut(s)	648, 938, 965, 1131
PfeI	GAWTC	1 cut(s)	607
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	6 cut(s)	94, 123, 160, 163, 304, 858
PleI	GAGTC	3 cut(s)	304, 541, 1181
PpsI	GAGTC	3 cut(s)	304, 541, 1181
PscI	ACATGT	2 cut(s)	397, 1038
PsiI	TTATAA	2 cut(s)	833, 1115
Psp6I	CCWGG	2 cut(s)	186, 681
PspFI	CCCAGC	1 cut(s)	74
PspGI	CCWGG	2 cut(s)	186, 681
PspN4I	GGNNCC	1 cut(s)	1012
PspPI	GGNCC	3 cut(s)	19, 1011, 1029
PstNI	CAGNNNCTG	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	750
PvuII	CAGCTG	1 cut(s)	875
RseI	CAYNNNNRTG	3 cut(s)	396, 450, 1179
SapI	GCTCTTC	4 cut(s)	648, 938, 965, 1131
SatI	GCNGC	6 cut(s)	93, 122, 159, 162, 303, 857
Sau3AI	GATC	4 cut(s)	43, 750, 953, 1171
Sau96I	GGNCC	3 cut(s)	19, 1011, 1029
SchI	GAGTC	3 cut(s)	304, 541, 1181
ScrFI	CCNGG	2 cut(s)	188, 683
SduI	GDGCHC	2 cut(s)	12, 511
SfcI	CTRYAG	1 cut(s)	552
SinI	GGWCC	2 cut(s)	1011, 1029
SmiMI	CAYNNNNRTG	3 cut(s)	396, 450, 1179
SmlI	CTYRAG	1 cut(s)	1055
SmoI	CTYRAG	1 cut(s)	1055
SphI	GCATGC	1 cut(s)	92
SsiI	CCGC	1 cut(s)	419
SspI	AATATT	1 cut(s)	994
StyD4I	CCNGG	2 cut(s)	186, 681
StyI	CCWWGG	4 cut(s)	15, 391, 755, 1032
TaaI	ACNGT	5 cut(s)	703, 815, 840, 881, 986
TaiI	ACGT	1 cut(s)	1131
TaqI	TCGA	5 cut(s)	42, 82, 513, 763, 1134
TfiI	GAWTC	1 cut(s)	607
TscAI	CASTG	5 cut(s)	312, 526, 891, 963, 991
TseFI	GTSAC	6 cut(s)	229, 307, 536, 736, 809, 815
TseI	GCWGC	6 cut(s)	92, 121, 158, 161, 302, 856
Tsp45I	GTSAC	6 cut(s)	229, 307, 536, 736, 809, 815
TspDTI	ATGAA	5 cut(s)	620, 666, 695, 810, 1179
TspGWI	ACGGA	1 cut(s)	311
TspRI	CASTG	5 cut(s)	312, 526, 891, 963, 991
VpaK11BI	GGWCC	2 cut(s)	1011, 1029
XapI	RAATTY	2 cut(s)	598, 797
XceI	RCATGY	3 cut(s)	92, 401, 1042
Zsp2I	ATGCAT	1 cut(s)	447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.