AT4G33700

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007184
Physical Location & Seq
Reverse (-)
16176232 .. 16179481
3250 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33700.1

Sequence Viewer

Length: 1275 bp
ATGGCGGTGGAGTATGTATGTTGCAGCCCAAACTTCTTTATACATATAGCTGTGATTGTGTTTCTTGTCTTGTTCGCTGGACTCATGTCTGGCTTAACATTGGGTCTTATGTCTTTGAGTCTCGTTGATCTTGAAGTTCTCGCTAAATCCGGTACACCTGAACATCGTAAATATGCAGCAAAGATATTGCCAGTGGTAAAGAATCAGCACTTGTTGCTTGTCACTTTACTTATATGCAATGCAGCTGCTATGGAGACGCTTCCTATTTTTCTTGATGGCCTTGTGACGGCATGGGGTGCCATTTTGATTTCAGTTACATTGATTCTTCTCTTTGGTGAGATTATACCTCAGTCGATTTGTTCACGTTATGGTTTAGCGATTGGTGCAACAGTGGCTCCGTTTGTCCGTGTCCTAGTCTTTATCTGCTTACCTGTTGCATGGCCAATAAGCAAGTTGCTGGACTTTCTATTGGGTCATCGTCGTGCAGCGCTTTTTCGAAGAGCTGAGCTGAAAACACTTGTGGATTTTCATGGAAATGAGGCTGGAAAGGGTGGGGAGTTGACTCATGACGAAACGACAATCATTGCAGGAGCTCTTGAACTCTCTGAGAAAATGGTCAAAGATGCAATGACACCAATATCGGATATCTTTGTGATTGATATCAATGCCAAACTAGACAGAGACTTGATGAACTTGATTCTTGAGAAAGGGCATAGCAGAGTTCCAGTATACTATGAGCAGCCAACTAACATAATCGGCCTTGTTCTGGTGAAGAACTTATTAACTATCAACCCAGATGAAGAAATACCTGTCAAGAATGTCACGATAAGAAGGATTCCAAGAGTTCCAGAAATCTTGCCTTTATATGACATATTGAACGAATTCCAGAAAGGACTCAGCCACATGGCTGTTGTTGTAAGACAGTGTGACAAAATCCACCCATTACCTTCTAAAAATGGGAGTGTTAAGGAAGCCCGAGTGGATGTGGATAGTGAGGGAACTCCTACTCCTCAGGAGAGAATGTTAAGGACAAAAAGATCGCTTCAAAAGTGGAAGAGCTTTCCGAATCGAGCAAGTTCGTTTAAAGGAGGGTCAAAGAGCAAGAAGTGGTCAAAAGACAATGATGCAGACATCCTGCAATTGAATGGCAATCCGCTGCCTAAACTTGCTGAGGAAGAAGAAGCAGTCGGAATCATTACGATGGAGGATGTCATTGAAGAACTTCTGCAGGAGGAGATCTTTGACGAAACTGATCACCATTTTGAAGACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF21

Protein Analysis

424

Amino Acids

47.11

Weight (kDa)

5.73

Isoelectric Point (pI)

43.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CNNM PF01595 18 - 188 5.7e-36 Cyclin M transmembrane N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 729
AciI CCGC 2 cut(s) 5, 1154
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 1 cut(s) 881
AfaI GTAC 1 cut(s) 154
AfeI AGCGCT 1 cut(s) 489
AfiI CCNNNNNNNGG 2 cut(s) 286, 766
AgsI TTSAA 7 cut(s) 134, 599, 877, 1046, 1144, 1217, 1265
AloI GAACNNNNNNTCC 2 cut(s) 991, 1023
AluBI AGCT 6 cut(s) 50, 245, 503, 508, 593, 1059
AluI AGCT 6 cut(s) 50, 245, 503, 508, 593, 1059
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 3 cut(s) 125, 248, 675
Ama87I CYCGRG 1 cut(s) 975
Aor51HI AGCGCT 1 cut(s) 489
AoxI GGCC 3 cut(s) 277, 440, 757
ApeKI GCWGC 7 cut(s) 24, 176, 242, 245, 485, 739, 1156
ApoI RAATTY 1 cut(s) 881
Asp700I GAANNNNTTC 2 cut(s) 881, 1221
AspLEI GCGC 1 cut(s) 490
AsuHPI GGTGA 3 cut(s) 347, 781, 1247
AsuII TTCGAA 1 cut(s) 496
AvaI CYCGRG 1 cut(s) 975
AxyI CCTNAGG 1 cut(s) 1011
BalI TGGCCA 1 cut(s) 442
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 595
BbvCI CCTCAGC 1 cut(s) 1170
BbvI GCAGC 7 cut(s) 36, 188, 232, 254, 497, 751, 1143
BccI CCATC 2 cut(s) 269, 1195
BceAI ACGGC 1 cut(s) 303
BclI TGATCA 1 cut(s) 1252
BcoDI GTCTC 3 cut(s) 125, 248, 675
BfaI CTAG 2 cut(s) 413, 674
BfmI CTRYAG 1 cut(s) 1226
BfoI RGCGCY 1 cut(s) 491
BglII AGATCT 1 cut(s) 1236
BisI GCNGC 7 cut(s) 25, 177, 243, 246, 486, 740, 1157
BlpI GCTNAGC 1 cut(s) 504
BlsI GCNGC 7 cut(s) 26, 178, 244, 247, 487, 741, 1158
BmeT110I CYCGRG 1 cut(s) 975
BmiI GGNNCC 2 cut(s) 298, 396
BmsI GCATC 2 cut(s) 613, 1114
BoxI GACNNNNGTC 1 cut(s) 85
Bpu10I CCTNAGC 1 cut(s) 1170
Bpu1102I GCTNAGC 1 cut(s) 504
Bpu14I TTCGAA 1 cut(s) 496
BpuEI CTTGAG 1 cut(s) 722
BsaBI GATNNNNATC 1 cut(s) 659
BsaWI WCCGGW 1 cut(s) 149
BsaXI ACNNNNNCTCC 6 cut(s) 379, 409, 991, 1007, 1021, 1037
Bsc4I CCNNNNNNNGG 2 cut(s) 286, 766
Bse1I ACTGG 2 cut(s) 191, 725
Bse21I CCTNAGG 1 cut(s) 1011
Bse3DI GCAATG 3 cut(s) 244, 582, 633
Bse8I GATNNNNATC 1 cut(s) 659
BseGI GGATG 3 cut(s) 988, 1131, 1213
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 2 cut(s) 286, 766
BseMI GCAATG 3 cut(s) 244, 582, 633
BseMII CTCAG 6 cut(s) 362, 495, 597, 910, 1025, 1161
BseNI ACTGG 2 cut(s) 191, 725
BseRI GAGGAG 2 cut(s) 999, 1247
BseXI GCAGC 7 cut(s) 36, 188, 232, 254, 497, 751, 1143
BsgI GTGCAG 1 cut(s) 504
BshFI GGCC 3 cut(s) 279, 442, 759
BshNI GGYRCC 1 cut(s) 296
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 1 cut(s) 975
BsiSI CCGG 1 cut(s) 150
BslI CCNNNNNNNGG 2 cut(s) 286, 766
BsmAI GTCTC 3 cut(s) 125, 248, 675
BsmBI CGTCTC 1 cut(s) 248
BsnI GGCC 3 cut(s) 279, 442, 759
BsoBI CYCGRG 1 cut(s) 975
Bsp119I TTCGAA 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 595
Bsp143I GATC 4 cut(s) 127, 1037, 1236, 1252
Bsp1720I GCTNAGC 1 cut(s) 504
BspACI CCGC 2 cut(s) 5, 1154
BspANI GGCC 3 cut(s) 279, 442, 759
BspCNI CTCAG 6 cut(s) 361, 496, 598, 909, 1024, 1162
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 298, 396
BspMAI CTGCAG 1 cut(s) 1230
BspQI GCTCTTC 2 cut(s) 493, 1049
BspT104I TTCGAA 1 cut(s) 496
BspT107I GGYRCC 1 cut(s) 296
BsrDI GCAATG 3 cut(s) 244, 582, 633
BsrI ACTGG 2 cut(s) 191, 725
BssMI GATC 4 cut(s) 127, 1037, 1236, 1252
BssNAI GTATAC 1 cut(s) 730
Bst1107I GTATAC 1 cut(s) 730
Bst4CI ACNGT 2 cut(s) 391, 924
Bst6I CTCTTC 2 cut(s) 493, 1049
BstAPI GCANNNNNTGC 2 cut(s) 214, 296
BstBI TTCGAA 1 cut(s) 496
BstDEI CTNAG 6 cut(s) 348, 504, 606, 896, 1011, 1170
BstF5I GGATG 3 cut(s) 988, 1131, 1213
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 130, 1040, 1239, 1255
BstMAI GTCTC 3 cut(s) 125, 248, 675
BstMBI GATC 4 cut(s) 127, 1037, 1236, 1252
BstMWI GCNNNNNNNGC 4 cut(s) 214, 296, 383, 392
BstPAI GACNNNNGTC 1 cut(s) 85
BstSFI CTRYAG 1 cut(s) 1226
BstV1I GCAGC 7 cut(s) 36, 188, 232, 254, 497, 751, 1143
BstX2I RGATCY 1 cut(s) 1236
BstYI RGATCY 1 cut(s) 1236
BstZ17I GTATAC 1 cut(s) 730
Bsu36I CCTNAGG 1 cut(s) 1011
BsuRI GGCC 3 cut(s) 279, 442, 759
BtsCI GGATG 3 cut(s) 988, 1131, 1213
BtsIMutI CAGTG 3 cut(s) 198, 396, 929
CciI TCATGA 1 cut(s) 565
CfoI GCGC 1 cut(s) 490
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 153
CviAII CATG 6 cut(s) 85, 291, 438, 530, 566, 904
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 6 cut(s) 348, 504, 606, 896, 1011, 1170
DpnI GATC 4 cut(s) 129, 1039, 1238, 1254
DpnII GATC 4 cut(s) 127, 1037, 1236, 1252
DraI TTTAAA 1 cut(s) 1084
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 493, 1049
EarI CTCTTC 2 cut(s) 493, 1049
Ecl136II GAGCTC 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 595
Eco32I GATATC 2 cut(s) 646, 661
Eco47III AGCGCT 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 593
Eco81I CCTNAGG 1 cut(s) 1011
Eco88I CYCGRG 1 cut(s) 975
EcoICRI GAGCTC 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 881
EcoRV GATATC 2 cut(s) 646, 661
EcoT38I GRGCYC 1 cut(s) 595
Esp3I CGTCTC 1 cut(s) 248
FaeI CATG 6 cut(s) 88, 294, 441, 533, 569, 907
FatI CATG 6 cut(s) 84, 290, 437, 529, 565, 903
FbaI TGATCA 1 cut(s) 1252
FblI GTMKAC 1 cut(s) 729
Fnu4HI GCNGC 7 cut(s) 25, 177, 243, 246, 486, 740, 1157
FokI GGATG 3 cut(s) 995, 1118, 1220
FriOI GRGCYC 1 cut(s) 595
Fsp4HI GCNGC 7 cut(s) 25, 177, 243, 246, 486, 740, 1157
FspBI CTAG 2 cut(s) 413, 674
GlaI GCGC 1 cut(s) 489
GluI GCNGC 7 cut(s) 25, 177, 243, 246, 486, 740, 1157
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 3 cut(s) 279, 442, 759
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 265
HhaI GCGC 1 cut(s) 490
Hin1II CATG 6 cut(s) 88, 294, 441, 533, 569, 907
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HincII GTYRAC 1 cut(s) 561
HindII GTYRAC 1 cut(s) 561
HpaII CCGG 1 cut(s) 150
HphI GGTGA 3 cut(s) 347, 781, 1247
Hpy166II GTNNAC 4 cut(s) 155, 362, 561, 730
Hpy188I TCNGA 4 cut(s) 607, 643, 1065, 1190
Hpy8I GTNNAC 4 cut(s) 155, 362, 561, 730
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 2 cut(s) 825, 957
HpyCH4III ACNGT 2 cut(s) 391, 924
HpyCH4IV ACGT 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 296, 383, 392
HpyF3I CTNAG 6 cut(s) 348, 504, 606, 896, 1011, 1170
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 6 cut(s) 88, 294, 441, 533, 569, 907
HspAI GCGC 1 cut(s) 488
Ksp22I TGATCA 1 cut(s) 1252
Kzo9I GATC 4 cut(s) 127, 1037, 1236, 1252
LguI GCTCTTC 2 cut(s) 493, 1049
LmnI GCTCC 2 cut(s) 400, 590
Lsp1109I GCAGC 7 cut(s) 36, 188, 232, 254, 497, 751, 1143
LweI GCATC 2 cut(s) 613, 1114
MaeI CTAG 2 cut(s) 413, 674
MaeII ACGT 1 cut(s) 364
MaeIII GTNAC 5 cut(s) 220, 283, 313, 820, 926
MalI GATC 4 cut(s) 129, 1039, 1238, 1254
MboI GATC 4 cut(s) 127, 1037, 1236, 1252
MboII GAAGA 8 cut(s) 317, 510, 784, 812, 1066, 1187, 1190, 1229
MfeI CAATTG 1 cut(s) 1139
MflI RGATCY 1 cut(s) 1236
MhlI GDGCHC 1 cut(s) 595
MlsI TGGCCA 1 cut(s) 442
MluCI AATT 2 cut(s) 881, 1139
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 5 cut(s) 75, 127, 556, 888, 1262
MmeI TCCRAC 1 cut(s) 1168
MnlI CCTC 8 cut(s) 357, 532, 988, 1020, 1082, 1165, 1198, 1225
Mox20I TGGCCA 1 cut(s) 442
MroXI GAANNNNTTC 2 cut(s) 881, 1221
MscI TGGCCA 1 cut(s) 442
MseI TTAA 5 cut(s) 95, 782, 966, 1025, 1083
MslI CAYNNNNRTG 3 cut(s) 480, 534, 1199
Msp20I TGGCCA 1 cut(s) 442
MspA1I CMGCKG 2 cut(s) 245, 1156
MspI CCGG 1 cut(s) 150
MunI CAATTG 1 cut(s) 1139
MwoI GCNNNNNNNGC 4 cut(s) 214, 296, 383, 392
NdeII GATC 4 cut(s) 127, 1037, 1236, 1252
NlaIII CATG 6 cut(s) 88, 294, 441, 533, 569, 907
NlaIV GGNNCC 2 cut(s) 298, 396
NmuCI GTSAC 4 cut(s) 220, 283, 820, 926
NspV TTCGAA 1 cut(s) 496
PagI TCATGA 1 cut(s) 565
PciSI GCTCTTC 2 cut(s) 493, 1049
PdmI GAANNNNTTC 2 cut(s) 881, 1221
PfeI GAWTC 6 cut(s) 202, 322, 697, 835, 1066, 1191
PkrI GCNGC 7 cut(s) 26, 178, 244, 247, 487, 741, 1158
PleI GAGTC 5 cut(s) 75, 126, 556, 888, 1262
PpsI GAGTC 5 cut(s) 75, 126, 556, 888, 1262
PshAI GACNNNNGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 595
PspN4I GGNNCC 2 cut(s) 298, 396
PstI CTGCAG 1 cut(s) 1230
PsuI RGATCY 1 cut(s) 1236
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
RseI CAYNNNNRTG 3 cut(s) 480, 534, 1199
SacI GAGCTC 1 cut(s) 595
SapI GCTCTTC 2 cut(s) 493, 1049
SaqAI TTAA 5 cut(s) 95, 782, 966, 1025, 1083
SatI GCNGC 7 cut(s) 25, 177, 243, 246, 486, 740, 1157
Sau3AI GATC 4 cut(s) 127, 1037, 1236, 1252
SchI GAGTC 5 cut(s) 75, 127, 556, 888, 1262
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 2 cut(s) 613, 1114
SfcI CTRYAG 1 cut(s) 1226
SfuI TTCGAA 1 cut(s) 496
SmiMI CAYNNNNRTG 3 cut(s) 480, 534, 1199
SmlI CTYRAG 1 cut(s) 701
SmoI CTYRAG 1 cut(s) 701
Sse9I AATT 2 cut(s) 881, 1139
SsiI CCGC 2 cut(s) 5, 1154
SspMI CTAG 2 cut(s) 413, 674
SstI GAGCTC 1 cut(s) 595
TaaI ACNGT 2 cut(s) 391, 924
TaiI ACGT 1 cut(s) 367
TaqI TCGA 3 cut(s) 353, 496, 1069
TasI AATT 2 cut(s) 881, 1139
TfiI GAWTC 6 cut(s) 202, 322, 697, 835, 1066, 1191
Tru1I TTAA 5 cut(s) 95, 782, 966, 1025, 1083
Tru9I TTAA 5 cut(s) 95, 782, 966, 1025, 1083
TscAI CASTG 3 cut(s) 198, 396, 929
TseFI GTSAC 4 cut(s) 220, 283, 820, 926
TseI GCWGC 7 cut(s) 24, 176, 242, 245, 485, 739, 1156
Tsp45I GTSAC 4 cut(s) 220, 283, 820, 926
TspDTI ATGAA 3 cut(s) 518, 704, 813
TspGWI ACGGA 2 cut(s) 387, 395
TspRI CASTG 3 cut(s) 198, 396, 929
XapI RAATTY 1 cut(s) 881
XmiI GTMKAC 1 cut(s) 729
XmnI GAANNNNTTC 2 cut(s) 881, 1221
XspI CTAG 2 cut(s) 413, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.