RchiOBHm_Chr2g0090241

RNA polymerase II transcription factor B subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
4135755 .. 4137011
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1257 bp
ATGTCGAAGGGTGAACTAATTAAGTTTGCAAGGTACAAGGCTTCAGTCATAGACCCCGGCACTCTTGGACTTTTAACCATTACAGAAAATAAAATTGAGTTCTGTGCCGATCCCAAATATGCCACAAAGCTATTTGAAGTGGGGCTTGAACATATTAAAGGACATCAACACACCAAAGAAGGATCACATAAACCAGCCTGGCTAAATCTCAACACAGATAAGGATGTGACTAGGACTAGGTACATCTTTGAGCTCTATAGTTATCCAGATCTTCATGAATGCGTTGAATTTTTACGCAAGTTGCTTCTTGAGTTTAGCTGTAGAAAAGTTGGTTACAAAAGTTCGATGATATTTGACACCAAGCCTAGTAGAAAGGTTACATTTACTGAAGAGATTAAGCACCGGATATTTGCTCTGAGGCCAGCTGTGCACCAGGCATATCTTAACAGTGTAGTTCCCGGAAAGACCAAAGAGCATGACTTCTGGAGAAAGTATTTCAATGCTGAACAGGTCCGAATGTATAGTGCAAAGAATGTTGTTGCGGCTGAAGCAGAAGCTACTGAGGATGAGGAAAAGGCAGTTTTTTTGAAGGATGATGAACTAGTTGCAAGGGAAGCTCGTAGGAAGATTCGACGTGTTGATCCAACTTTGGATATGGTAGCTGATCAAAGGGATGATCATACACATCTTCCTTTGCATGGGATCTTTCACCACGACATAAATGATGAAGAAGTGCAGAATAATAATCAAAAGAGGTGGAGGACTTTGCGGCAAGATGTTAACAGACAAGGAGCTGTTGTTCTTCAAGGAATAAGAGCTGTGGAAGAGGAATTTACACGGCGTAGGTCAAAACAGGAATATTCTGATGATGAGAGTAGTGACGTGCAGCAGGAGAAGAGACTTGATAGGATTAGTTGGATAACTGAGATAGAGGACCTGGAAGAACCTCATTCTGTTGCTCCATTATGTTTTGATACGGATCTTTGGGACTACTCGGAACTAGCTAGCGCTAATGCAGGGCTTAAAACTTTGGACGATTCAAGTACTGGAAGTGAACAAAATAAAAAGGTGGTTACTGCTCAGGAAGCATACGGCTCTTTGAGGGAGTCTATATCTGAAATTAAGAGCATTGGGCTGAGCAATGCCACAGTTGGACTGAAATTCAATGTTGAGGATTTTCTCAAGGAAGTAGGAAAAACTTCAGGTATCAAGGATCGACCTGCGACAGACATGGACATGTTGCCCAAAACCAAGTAA

Protein Analysis

418

Amino Acids

48.13

Weight (kDa)

6.02

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 129 - 168 1.7e-06 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019381)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0090241
rosa_laevigata RLG00000016090
rosa_multiflora Rmu_sc0000436.1_g000001 Rmu_sc0012828.1_g000002
rosa_roxburghii Rroxscaffold_2G00151360
rosa_rugosa Rorug02G0005600
rosa_samantha Rh2DG051600
rosa_wichuraiana Rw2G004520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1228
AciI CCGC 2 cut(s) 542, 769
AclWI GGATC 6 cut(s) 104, 190, 635, 710, 987, 1221
AcsI RAATTY 3 cut(s) 287, 830, 1160
AcuI CTGAAG 4 cut(s) 27, 408, 567, 1185
AfaI GTAC 3 cut(s) 35, 242, 1045
AfeI AGCGCT 1 cut(s) 1009
AfiI CCNNNNNNNGG 1 cut(s) 698
AflIII ACRYGT 2 cut(s) 634, 1236
AgsI TTSAA 8 cut(s) 137, 149, 287, 499, 589, 806, 1041, 1165
AhlI ACTAGT 1 cut(s) 601
AjiI CACGTC 2 cut(s) 635, 883
AjnI CCWGG 3 cut(s) 197, 432, 936
AloI GAACNNNNNNTCC 2 cut(s) 783, 815
Alw21I GWGCWC 2 cut(s) 255, 432
Alw26I GTCTC 1 cut(s) 892
Alw44I GTGCAC 1 cut(s) 428
AlwI GGATC 6 cut(s) 104, 190, 635, 710, 987, 1221
Aor51HI AGCGCT 1 cut(s) 1009
AoxI GGCC 1 cut(s) 419
ApaLI GTGCAC 1 cut(s) 428
ApeKI GCWGC 1 cut(s) 886
ApoI RAATTY 3 cut(s) 287, 830, 1160
Asp700I GAANNNNTTC 1 cut(s) 1198
AspLEI GCGC 1 cut(s) 1010
AspS9I GGNCC 2 cut(s) 511, 934
AsuC2I CCSGG 2 cut(s) 57, 459
AsuHPI GGTGA 2 cut(s) 23, 701
AsuNHI GCTAGC 1 cut(s) 1004
AvaII GGWCC 2 cut(s) 511, 934
BaeGI GKGCMC 1 cut(s) 432
BanII GRGCYC 1 cut(s) 255
Bbv12I GWGCWC 2 cut(s) 255, 432
BbvI GCAGC 1 cut(s) 898
BceAI ACGGC 2 cut(s) 854, 1108
BciT130I CCWGG 3 cut(s) 199, 434, 938
BclI TGATCA 2 cut(s) 664, 676
BcnI CCSGG 2 cut(s) 57, 459
BcoDI GTCTC 1 cut(s) 892
BcuI ACTAGT 1 cut(s) 601
BfaI CTAG 6 cut(s) 231, 237, 366, 602, 1001, 1005
BfmI CTRYAG 2 cut(s) 256, 319
BfoI RGCGCY 1 cut(s) 1011
BfuAI ACCTGC 1 cut(s) 1228
BglII AGATCT 1 cut(s) 268
BisI GCNGC 3 cut(s) 543, 770, 887
BlpI GCTNAGC 1 cut(s) 1136
BlsI GCNGC 3 cut(s) 544, 771, 888
BmcAI AGTACT 1 cut(s) 1045
Bme1390I CCNGG 5 cut(s) 57, 199, 434, 459, 938
Bme18I GGWCC 2 cut(s) 511, 934
BmgBI CACGTC 2 cut(s) 635, 883
BmgT120I GGNCC 2 cut(s) 511, 934
BmrFI CCNGG 5 cut(s) 57, 199, 434, 459, 938
BmtI GCTAGC 1 cut(s) 1008
BpmI CTGGAG 1 cut(s) 505
Bpu10I CCTNAGC 1 cut(s) 1080
Bpu1102I GCTNAGC 1 cut(s) 1136
BpuEI CTTGAG 2 cut(s) 329, 1166
BpuMI CCSGG 2 cut(s) 57, 459
BsaBI GATNNNNATC 1 cut(s) 978
BsaJI CCNNGG 1 cut(s) 55
BsaWI WCCGGW 1 cut(s) 402
BsaXI ACNNNNNCTCC 2 cut(s) 783, 813
Bsc4I CCNNNNNNNGG 1 cut(s) 698
Bse1I ACTGG 1 cut(s) 1051
Bse3DI GCAATG 1 cut(s) 1147
Bse8I GATNNNNATC 1 cut(s) 978
BseBI CCWGG 3 cut(s) 199, 434, 938
BseDI CCNNGG 1 cut(s) 55
BseGI GGATG 4 cut(s) 229, 571, 598, 679
BseJI GATNNNNATC 1 cut(s) 978
BseLI CCNNNNNNNGG 1 cut(s) 698
BseMI GCAATG 1 cut(s) 1147
BseMII CTCAG 5 cut(s) 407, 552, 915, 1094, 1127
BseNI ACTGG 1 cut(s) 1051
BseSI GKGCMC 1 cut(s) 432
BseXI GCAGC 1 cut(s) 898
BsgI GTGCAG 2 cut(s) 755, 905
BshFI GGCC 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 255, 432
BsiSI CCGG 3 cut(s) 57, 403, 459
BslFI GGGAC 1 cut(s) 1001
BslI CCNNNNNNNGG 1 cut(s) 698
BsmAI GTCTC 1 cut(s) 892
BsmFI GGGAC 1 cut(s) 1001
BsmI GAATGC 1 cut(s) 284
BsnI GGCC 1 cut(s) 421
Bsp1286I GDGCHC 2 cut(s) 255, 432
Bsp143I GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
Bsp1720I GCTNAGC 1 cut(s) 1136
BspACI CCGC 2 cut(s) 542, 769
BspANI GGCC 1 cut(s) 421
BspCNI CTCAG 5 cut(s) 408, 553, 916, 1093, 1128
BspHI TCATGA 1 cut(s) 274
BspMI ACCTGC 1 cut(s) 1228
BspOI GCTAGC 1 cut(s) 1008
BspPI GGATC 6 cut(s) 104, 190, 635, 710, 987, 1221
BsrDI GCAATG 1 cut(s) 1147
BsrI ACTGG 1 cut(s) 1051
BssECI CCNNGG 1 cut(s) 55
BssMI GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
Bst2UI CCWGG 3 cut(s) 199, 434, 938
Bst4CI ACNGT 2 cut(s) 449, 1150
Bst6I CTCTTC 3 cut(s) 384, 819, 890
BstC8I GCNNGC 2 cut(s) 423, 1006
BstDEI CTNAG 5 cut(s) 416, 561, 924, 1080, 1136
BstF5I GGATG 4 cut(s) 229, 571, 598, 679
BstH2I RGCGCY 1 cut(s) 1011
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 9 cut(s) 112, 185, 271, 643, 667, 679, 705, 982, 1216
BstMAI GTCTC 1 cut(s) 892
BstMBI GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 427, 548, 614, 1085
BstNI CCWGG 3 cut(s) 199, 434, 938
BstNSI RCATGY 1 cut(s) 1240
BstSCI CCNGG 5 cut(s) 55, 197, 432, 457, 936
BstSFI CTRYAG 2 cut(s) 256, 319
BstSLI GKGCMC 1 cut(s) 432
BstV1I GCAGC 1 cut(s) 898
BstX2I RGATCY 3 cut(s) 268, 702, 979
BstYI RGATCY 3 cut(s) 268, 702, 979
BsuRI GGCC 1 cut(s) 421
BtrI CACGTC 2 cut(s) 635, 883
BtsCI GGATG 4 cut(s) 229, 571, 598, 679
BtsIMutI CAGTG 1 cut(s) 454
BveI ACCTGC 1 cut(s) 1228
Cac8I GCNNGC 2 cut(s) 423, 1006
CciI TCATGA 1 cut(s) 274
CfoI GCGC 1 cut(s) 1010
Cfr13I GGNCC 2 cut(s) 511, 934
Csp6I GTAC 3 cut(s) 34, 241, 1044
CspCI CAANNNNNGTGG 2 cut(s) 737, 772
CviAII CATG 5 cut(s) 275, 476, 698, 1231, 1237
CviQI GTAC 3 cut(s) 34, 241, 1044
DdeI CTNAG 5 cut(s) 416, 561, 924, 1080, 1136
DpnI GATC 9 cut(s) 111, 184, 270, 642, 666, 678, 704, 981, 1215
DpnII GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
Eam1104I CTCTTC 3 cut(s) 384, 819, 890
EarI CTCTTC 3 cut(s) 384, 819, 890
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 2 cut(s) 511, 934
Eco47III AGCGCT 1 cut(s) 1009
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 4 cut(s) 27, 408, 567, 1185
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 934
EcoRII CCWGG 3 cut(s) 197, 432, 936
EcoT38I GRGCYC 1 cut(s) 255
FaeI CATG 5 cut(s) 278, 479, 701, 1234, 1240
FalI AAGNNNNNCTT 2 cut(s) 129, 161
FaqI GGGAC 1 cut(s) 1001
FatI CATG 5 cut(s) 274, 475, 697, 1230, 1236
FbaI TGATCA 2 cut(s) 664, 676
Fnu4HI GCNGC 3 cut(s) 543, 770, 887
FokI GGATG 4 cut(s) 236, 578, 605, 686
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 3 cut(s) 543, 770, 887
FspBI CTAG 6 cut(s) 231, 237, 366, 602, 1001, 1005
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 3 cut(s) 543, 770, 887
GsuI CTGGAG 1 cut(s) 505
HaeII RGCGCY 1 cut(s) 1011
HaeIII GGCC 1 cut(s) 421
HapII CCGG 3 cut(s) 57, 403, 459
HhaI GCGC 1 cut(s) 1010
Hin1II CATG 5 cut(s) 278, 479, 701, 1234, 1240
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HincII GTYRAC 1 cut(s) 781
HindII GTYRAC 1 cut(s) 781
HinfI GANTC 3 cut(s) 628, 1037, 1106
HpaI GTTAAC 1 cut(s) 781
HpaII CCGG 3 cut(s) 57, 403, 459
HphI GGTGA 2 cut(s) 23, 701
Hpy166II GTNNAC 4 cut(s) 14, 430, 781, 1055
Hpy188I TCNGA 5 cut(s) 417, 515, 865, 997, 1117
Hpy188III TCNNGA 5 cut(s) 266, 275, 308, 484, 1082
Hpy8I GTNNAC 4 cut(s) 14, 430, 781, 1055
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 2 cut(s) 173, 583
HpyCH4III ACNGT 2 cut(s) 449, 1150
HpyCH4IV ACGT 2 cut(s) 634, 882
HpyCH4V TGCA 8 cut(s) 29, 430, 527, 608, 697, 736, 886, 1016
HpyF10VI GCNNNNNNNGC 4 cut(s) 427, 548, 614, 1085
HpyF3I CTNAG 5 cut(s) 416, 561, 924, 1080, 1136
HpySE526I ACGT 2 cut(s) 634, 882
Hsp92II CATG 5 cut(s) 278, 479, 701, 1234, 1240
HspAI GCGC 1 cut(s) 1008
Ksp22I TGATCA 2 cut(s) 664, 676
KspAI GTTAAC 1 cut(s) 781
Kzo9I GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
LmnI GCTCC 2 cut(s) 791, 964
Lsp1109I GCAGC 1 cut(s) 898
MaeI CTAG 6 cut(s) 231, 237, 366, 602, 1001, 1005
MaeII ACGT 2 cut(s) 634, 882
MaeIII GTNAC 5 cut(s) 226, 332, 376, 878, 1072
MalI GATC 9 cut(s) 111, 184, 270, 642, 666, 678, 704, 981, 1215
MboI GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
MboII GAAGA 9 cut(s) 263, 401, 637, 680, 740, 794, 836, 907, 953
MflI RGATCY 3 cut(s) 268, 702, 979
MhlI GDGCHC 2 cut(s) 255, 432
MluCI AATT 6 cut(s) 18, 93, 287, 830, 1119, 1160
MlyI GAGTC 1 cut(s) 1115
MmeI TCCRAC 3 cut(s) 668, 896, 1132
MroXI GAANNNNTTC 1 cut(s) 1198
MseI TTAA 8 cut(s) 21, 74, 156, 396, 444, 780, 1023, 1122
MslI CAYNNNNRTG 1 cut(s) 1235
MspA1I CMGCKG 1 cut(s) 425
MspI CCGG 3 cut(s) 57, 403, 459
MspR9I CCNGG 5 cut(s) 57, 199, 434, 459, 938
Mva1269I GAATGC 1 cut(s) 284
MvaI CCWGG 3 cut(s) 199, 434, 938
MwoI GCNNNNNNNGC 4 cut(s) 427, 548, 614, 1085
NciI CCSGG 2 cut(s) 57, 459
NdeII GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
NheI GCTAGC 1 cut(s) 1004
NlaIII CATG 5 cut(s) 278, 479, 701, 1234, 1240
NmuCI GTSAC 2 cut(s) 226, 878
NspI RCATGY 1 cut(s) 1240
PagI TCATGA 1 cut(s) 274
PciI ACATGT 1 cut(s) 1236
PctI GAATGC 1 cut(s) 284
PdmI GAANNNNTTC 1 cut(s) 1198
PfeI GAWTC 2 cut(s) 628, 1037
PfoI TCCNGGA 1 cut(s) 457
PkrI GCNGC 3 cut(s) 544, 771, 888
PleI GAGTC 1 cut(s) 1114
PpsI GAGTC 1 cut(s) 1114
PpuMI RGGWCCY 1 cut(s) 934
PscI ACATGT 1 cut(s) 1236
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 934
Psp6I CCWGG 3 cut(s) 197, 432, 936
PspGI CCWGG 3 cut(s) 197, 432, 936
PspPI GGNCC 2 cut(s) 511, 934
PspPPI RGGWCCY 1 cut(s) 934
PsuI RGATCY 3 cut(s) 268, 702, 979
PvuII CAGCTG 1 cut(s) 425
RsaI GTAC 3 cut(s) 35, 242, 1045
RsaNI GTAC 3 cut(s) 34, 241, 1044
RseI CAYNNNNRTG 1 cut(s) 1235
SacI GAGCTC 1 cut(s) 255
SaqAI TTAA 8 cut(s) 21, 74, 156, 396, 444, 780, 1023, 1122
SatI GCNGC 3 cut(s) 543, 770, 887
Sau3AI GATC 9 cut(s) 109, 182, 268, 640, 664, 676, 702, 979, 1213
Sau96I GGNCC 2 cut(s) 511, 934
ScaI AGTACT 1 cut(s) 1045
SchI GAGTC 1 cut(s) 1115
ScrFI CCNGG 5 cut(s) 57, 199, 434, 459, 938
SduI GDGCHC 2 cut(s) 255, 432
SfcI CTRYAG 2 cut(s) 256, 319
SinI GGWCC 2 cut(s) 511, 934
SmiMI CAYNNNNRTG 1 cut(s) 1235
SmlI CTYRAG 2 cut(s) 308, 1181
SmoI CTYRAG 2 cut(s) 308, 1181
SpeI ACTAGT 1 cut(s) 601
Sse9I AATT 6 cut(s) 18, 93, 287, 830, 1119, 1160
SsiI CCGC 2 cut(s) 542, 769
SspI AATATT 1 cut(s) 860
SspMI CTAG 6 cut(s) 231, 237, 366, 602, 1001, 1005
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 5 cut(s) 55, 197, 432, 457, 936
TaaI ACNGT 2 cut(s) 449, 1150
TaiI ACGT 2 cut(s) 637, 885
TaqI TCGA 4 cut(s) 5, 344, 631, 1216
TasI AATT 6 cut(s) 18, 93, 287, 830, 1119, 1160
TatI WGTACW 1 cut(s) 1043
TauI GCSGC 2 cut(s) 545, 772
TfiI GAWTC 2 cut(s) 628, 1037
Tru1I TTAA 8 cut(s) 21, 74, 156, 396, 444, 780, 1023, 1122
Tru9I TTAA 8 cut(s) 21, 74, 156, 396, 444, 780, 1023, 1122
TscAI CASTG 1 cut(s) 454
TseFI GTSAC 2 cut(s) 226, 878
TseI GCWGC 1 cut(s) 886
Tsp45I GTSAC 2 cut(s) 226, 878
TspDTI ATGAA 4 cut(s) 263, 291, 612, 741
TspGWI ACGGA 1 cut(s) 992
TspRI CASTG 1 cut(s) 454
VneI GTGCAC 1 cut(s) 428
VpaK11BI GGWCC 2 cut(s) 511, 934
XapI RAATTY 3 cut(s) 287, 830, 1160
XceI RCATGY 1 cut(s) 1240
XmnI GAANNNNTTC 1 cut(s) 1198
XspI CTAG 6 cut(s) 231, 237, 366, 602, 1001, 1005
ZrmI AGTACT 1 cut(s) 1045
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.