Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012828.1

Orthogroup ID

OG0019381

Physical Location & Seq

Genomic Coordinates Reverse (-)

2727 .. 3984

Gene Structure 1258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012828.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

atgtcgaagggtgaactaattaaatttgcaaggtacaaggcttcagtcatagaccccggcactcttggacttttaaccattacagaaaataaaattgagttctgtgccgatcccaaatatgccacaaagctatttgaagtggggcttgaacatattaaaggacatcaacacaccaaagaaggatcaaataaaccagcctggctaaatctcaacacagataaggatgggactaggactaggtacatctttgagctcgatagttatccagatcttcatgaatgcgttgaatttttacgcaagttgcttcttgagtttagctgtagaaaagttggttacaaaagttcgatgatatttgacaccaagcctagtagaaaggttacatttactgaagagattaagcaccggatatttgctctgaggccagctgagcaccaggcatatcttaacagtgtagttcccggaaagaccaaagagcatgacttctggagaaagtatttcaatgctgaacaggatgatgaactagttgcaagggaagctcgtaggaagattcgacgtgttgatccaactttggatatggtagctgatcaaagggatgatcatacacatcttcctttgcatgggatctttcaccacgacataaatgatgaagaagtgcagaataataatcaaaagaggtggaggactttgcggcaagatgttaacagacaaggagctgttgttcttcaaggaataagagctgtggaagaggaatttacacggcgtaggtcaaaacaggaatattctgatgatgagagtagtgacgtgcagcaggagaagagacttgataggattagttggatgactgagatagaggacctggaagaacctcattctgttgctccattatgttttgatacggatctttgggactactcggaactagctagcgctaatgcagggcttaaaactttggacgattcaagtactggaagtgaacaaaataaaaaggtggttactgctcaggaagcatacggctctttgagggagtctatatctgaaattaagagcattgggctgagcaatgccacagttgcactggaattcaatgttgaggattttctcaaggaagtaggaaaaacttcaggtatcaaggatcgacctgcgacagacatggacatgttgcccaaaaccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006357 GO:0006360 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

BSD PH_TFIIH

Protein Analysis

391

Amino Acids

45.1

Weight (kDa)

5.79

Isoelectric Point (pI)

46.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019381)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0090241
rosa_laevigata	RLG00000016090
rosa_multiflora	Rmu_sc0000436.1_g000001 Rmu_sc0012828.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151360
rosa_rugosa	Rorug02G0005600
rosa_samantha	Rh2DG051600
rosa_wichuraiana	Rw2G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1147
AciI	CCGC	1 cut(s)	688
AclWI	GGATC	6 cut(s)	104, 190, 554, 629, 906, 1140
AcsI	RAATTY	4 cut(s)	23, 287, 749, 1079
AcuI	CTGAAG	3 cut(s)	27, 408, 1104
AfaI	GTAC	3 cut(s)	35, 242, 964
AfeI	AGCGCT	1 cut(s)	928
AfiI	CCNNNNNNNGG	1 cut(s)	617
AflIII	ACRYGT	2 cut(s)	553, 1155
AgsI	TTSAA	7 cut(s)	137, 149, 287, 499, 725, 960, 1084
AhlI	ACTAGT	1 cut(s)	520
AjiI	CACGTC	2 cut(s)	554, 802
AjnI	CCWGG	3 cut(s)	197, 432, 855
AloI	GAACNNNNNNTCC	2 cut(s)	702, 734
AluBI	AGCT	9 cut(s)	130, 253, 318, 425, 536, 581, 713, 737, 923
AluI	AGCT	9 cut(s)	130, 253, 318, 425, 536, 581, 713, 737, 923
Alw21I	GWGCWC	2 cut(s)	255, 432
Alw26I	GTCTC	1 cut(s)	811
AlwI	GGATC	6 cut(s)	104, 190, 554, 629, 906, 1140
Aor51HI	AGCGCT	1 cut(s)	928
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	1 cut(s)	805
ApoI	RAATTY	4 cut(s)	23, 287, 749, 1079
Asp700I	GAANNNNTTC	1 cut(s)	1117
AspLEI	GCGC	1 cut(s)	929
AspS9I	GGNCC	1 cut(s)	853
AsuC2I	CCSGG	2 cut(s)	57, 459
AsuHPI	GGTGA	2 cut(s)	23, 620
AsuNHI	GCTAGC	1 cut(s)	923
AvaII	GGWCC	1 cut(s)	853
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	2 cut(s)	255, 432
BbvI	GCAGC	1 cut(s)	817
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	2 cut(s)	773, 1027
BciT130I	CCWGG	3 cut(s)	199, 434, 857
BclI	TGATCA	2 cut(s)	583, 595
BcnI	CCSGG	2 cut(s)	57, 459
BcoDI	GTCTC	1 cut(s)	811
BcuI	ACTAGT	1 cut(s)	520
BfaI	CTAG	6 cut(s)	231, 237, 366, 521, 920, 924
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	930
BfuAI	ACCTGC	1 cut(s)	1147
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	2 cut(s)	689, 806
BlpI	GCTNAGC	2 cut(s)	426, 1055
BlsI	GCNGC	2 cut(s)	690, 807
BmcAI	AGTACT	1 cut(s)	964
Bme1390I	CCNGG	5 cut(s)	57, 199, 434, 459, 857
Bme18I	GGWCC	1 cut(s)	853
BmgBI	CACGTC	2 cut(s)	554, 802
BmgT120I	GGNCC	1 cut(s)	853
BmrFI	CCNGG	5 cut(s)	57, 199, 434, 459, 857
BmtI	GCTAGC	1 cut(s)	927
BpmI	CTGGAG	1 cut(s)	505
Bpu10I	CCTNAGC	1 cut(s)	999
Bpu1102I	GCTNAGC	2 cut(s)	426, 1055
BpuEI	CTTGAG	2 cut(s)	329, 1085
BpuMI	CCSGG	2 cut(s)	57, 459
BsaBI	GATNNNNATC	2 cut(s)	261, 897
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	2 cut(s)	970, 1080
Bse3DI	GCAATG	1 cut(s)	1066
Bse8I	GATNNNNATC	2 cut(s)	261, 897
BseBI	CCWGG	3 cut(s)	199, 434, 857
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	4 cut(s)	229, 517, 598, 843
BseJI	GATNNNNATC	2 cut(s)	261, 897
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseMI	GCAATG	1 cut(s)	1066
BseMII	CTCAG	5 cut(s)	407, 417, 834, 1013, 1046
BseNI	ACTGG	2 cut(s)	970, 1080
BseXI	GCAGC	1 cut(s)	817
BsgI	GTGCAG	2 cut(s)	674, 824
BshFI	GGCC	1 cut(s)	421
BsiHKAI	GWGCWC	2 cut(s)	255, 432
BsiSI	CCGG	3 cut(s)	57, 403, 459
BslFI	GGGAC	2 cut(s)	241, 920
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	1 cut(s)	811
BsmFI	GGGAC	2 cut(s)	241, 920
BsmI	GAATGC	1 cut(s)	284
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	2 cut(s)	255, 432
Bsp143I	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
Bsp1720I	GCTNAGC	2 cut(s)	426, 1055
BspACI	CCGC	1 cut(s)	688
BspANI	GGCC	1 cut(s)	421
BspCNI	CTCAG	5 cut(s)	408, 418, 835, 1012, 1047
BspHI	TCATGA	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	1147
BspOI	GCTAGC	1 cut(s)	927
BspPI	GGATC	6 cut(s)	104, 190, 554, 629, 906, 1140
BsrDI	GCAATG	1 cut(s)	1066
BsrI	ACTGG	2 cut(s)	970, 1080
BssECI	CCNNGG	1 cut(s)	55
BssMI	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
Bst2UI	CCWGG	3 cut(s)	199, 434, 857
Bst4CI	ACNGT	2 cut(s)	449, 1069
Bst6I	CTCTTC	3 cut(s)	384, 738, 809
BstC8I	GCNNGC	2 cut(s)	423, 925
BstDEI	CTNAG	5 cut(s)	416, 426, 843, 999, 1055
BstF5I	GGATG	4 cut(s)	229, 517, 598, 843
BstH2I	RGCGCY	1 cut(s)	930
BstHHI	GCGC	1 cut(s)	929
BstKTI	GATC	9 cut(s)	112, 185, 271, 562, 586, 598, 624, 901, 1135
BstMAI	GTCTC	1 cut(s)	811
BstMBI	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
BstMWI	GCNNNNNNNGC	4 cut(s)	427, 533, 1004, 1070
BstNI	CCWGG	3 cut(s)	199, 434, 857
BstNSI	RCATGY	1 cut(s)	1159
BstSCI	CCNGG	5 cut(s)	55, 197, 432, 457, 855
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	817
BstX2I	RGATCY	3 cut(s)	268, 621, 898
BstYI	RGATCY	3 cut(s)	268, 621, 898
BsuRI	GGCC	1 cut(s)	421
BtrI	CACGTC	2 cut(s)	554, 802
BtsCI	GGATG	4 cut(s)	229, 517, 598, 843
BtsIMutI	CAGTG	2 cut(s)	454, 1073
BveI	ACCTGC	1 cut(s)	1147
Cac8I	GCNNGC	2 cut(s)	423, 925
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	1 cut(s)	929
Cfr13I	GGNCC	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	34, 241, 963
CspCI	CAANNNNNGTGG	2 cut(s)	656, 691
CviAII	CATG	5 cut(s)	275, 476, 617, 1150, 1156
CviQI	GTAC	3 cut(s)	34, 241, 963
DdeI	CTNAG	5 cut(s)	416, 426, 843, 999, 1055
DpnI	GATC	9 cut(s)	111, 184, 270, 561, 585, 597, 623, 900, 1134
DpnII	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
Eam1104I	CTCTTC	3 cut(s)	384, 738, 809
EarI	CTCTTC	3 cut(s)	384, 738, 809
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	853
Eco47III	AGCGCT	1 cut(s)	928
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	3 cut(s)	27, 408, 1104
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRI	GAATTC	1 cut(s)	1079
EcoRII	CCWGG	3 cut(s)	197, 432, 855
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	5 cut(s)	278, 479, 620, 1153, 1159
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	2 cut(s)	241, 920
FatI	CATG	5 cut(s)	274, 475, 616, 1149, 1155
FbaI	TGATCA	2 cut(s)	583, 595
Fnu4HI	GCNGC	2 cut(s)	689, 806
FokI	GGATG	4 cut(s)	236, 524, 605, 850
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	2 cut(s)	689, 806
FspBI	CTAG	6 cut(s)	231, 237, 366, 521, 920, 924
GlaI	GCGC	1 cut(s)	928
GluI	GCNGC	2 cut(s)	689, 806
GsuI	CTGGAG	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	930
HaeIII	GGCC	1 cut(s)	421
HapII	CCGG	3 cut(s)	57, 403, 459
HhaI	GCGC	1 cut(s)	929
Hin1II	CATG	5 cut(s)	278, 479, 620, 1153, 1159
Hin6I	GCGC	1 cut(s)	927
HinP1I	GCGC	1 cut(s)	927
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	547, 956, 1025
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	3 cut(s)	57, 403, 459
HphI	GGTGA	2 cut(s)	23, 620
Hpy166II	GTNNAC	3 cut(s)	14, 700, 974
Hpy188I	TCNGA	4 cut(s)	417, 784, 916, 1036
Hpy188III	TCNNGA	5 cut(s)	266, 275, 308, 484, 1001
Hpy8I	GTNNAC	3 cut(s)	14, 700, 974
Hpy99I	CGWCG	1 cut(s)	555
HpyAV	CCTTC	1 cut(s)	173
HpyCH4III	ACNGT	2 cut(s)	449, 1069
HpyCH4IV	ACGT	2 cut(s)	553, 801
HpyCH4V	TGCA	7 cut(s)	29, 527, 616, 655, 805, 935, 1073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	427, 533, 1004, 1070
HpyF3I	CTNAG	5 cut(s)	416, 426, 843, 999, 1055
HpySE526I	ACGT	2 cut(s)	553, 801
Hsp92II	CATG	5 cut(s)	278, 479, 620, 1153, 1159
HspAI	GCGC	1 cut(s)	927
Ksp22I	TGATCA	2 cut(s)	583, 595
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
LmnI	GCTCC	2 cut(s)	710, 883
Lsp1109I	GCAGC	1 cut(s)	817
MaeI	CTAG	6 cut(s)	231, 237, 366, 521, 920, 924
MaeII	ACGT	2 cut(s)	553, 801
MaeIII	GTNAC	4 cut(s)	332, 376, 797, 991
MalI	GATC	9 cut(s)	111, 184, 270, 561, 585, 597, 623, 900, 1134
MboI	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
MboII	GAAGA	9 cut(s)	263, 401, 556, 599, 659, 713, 755, 826, 872
MflI	RGATCY	3 cut(s)	268, 621, 898
MhlI	GDGCHC	2 cut(s)	255, 432
MluCI	AATT	7 cut(s)	18, 23, 93, 287, 749, 1038, 1079
MlyI	GAGTC	1 cut(s)	1034
MmeI	TCCRAC	2 cut(s)	587, 815
MnlI	CCTC	8 cut(s)	411, 666, 672, 739, 844, 876, 1014, 1084
MroXI	GAANNNNTTC	1 cut(s)	1117
MseI	TTAA	8 cut(s)	21, 74, 156, 396, 444, 699, 942, 1041
MslI	CAYNNNNRTG	1 cut(s)	1154
MspA1I	CMGCKG	1 cut(s)	425
MspI	CCGG	3 cut(s)	57, 403, 459
MspR9I	CCNGG	5 cut(s)	57, 199, 434, 459, 857
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	3 cut(s)	199, 434, 857
MwoI	GCNNNNNNNGC	4 cut(s)	427, 533, 1004, 1070
NciI	CCSGG	2 cut(s)	57, 459
NdeII	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
NheI	GCTAGC	1 cut(s)	923
NlaIII	CATG	5 cut(s)	278, 479, 620, 1153, 1159
NmuCI	GTSAC	1 cut(s)	797
NspI	RCATGY	1 cut(s)	1159
PagI	TCATGA	1 cut(s)	274
PciI	ACATGT	1 cut(s)	1155
PctI	GAATGC	1 cut(s)	284
PdmI	GAANNNNTTC	1 cut(s)	1117
PfeI	GAWTC	2 cut(s)	547, 956
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	2 cut(s)	690, 807
PleI	GAGTC	1 cut(s)	1033
PpsI	GAGTC	1 cut(s)	1033
PpuMI	RGGWCCY	1 cut(s)	853
PscI	ACATGT	1 cut(s)	1155
Psp124BI	GAGCTC	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	853
Psp6I	CCWGG	3 cut(s)	197, 432, 855
PspGI	CCWGG	3 cut(s)	197, 432, 855
PspPI	GGNCC	1 cut(s)	853
PspPPI	RGGWCCY	1 cut(s)	853
PsuI	RGATCY	3 cut(s)	268, 621, 898
PvuII	CAGCTG	1 cut(s)	425
RsaI	GTAC	3 cut(s)	35, 242, 964
RsaNI	GTAC	3 cut(s)	34, 241, 963
RseI	CAYNNNNRTG	1 cut(s)	1154
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	8 cut(s)	21, 74, 156, 396, 444, 699, 942, 1041
SatI	GCNGC	2 cut(s)	689, 806
Sau3AI	GATC	9 cut(s)	109, 182, 268, 559, 583, 595, 621, 898, 1132
Sau96I	GGNCC	1 cut(s)	853
ScaI	AGTACT	1 cut(s)	964
SchI	GAGTC	1 cut(s)	1034
ScrFI	CCNGG	5 cut(s)	57, 199, 434, 459, 857
SduI	GDGCHC	2 cut(s)	255, 432
SfcI	CTRYAG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	1154
SmlI	CTYRAG	2 cut(s)	308, 1100
SmoI	CTYRAG	2 cut(s)	308, 1100
SpeI	ACTAGT	1 cut(s)	520
Sse9I	AATT	7 cut(s)	18, 23, 93, 287, 749, 1038, 1079
SsiI	CCGC	1 cut(s)	688
SspI	AATATT	1 cut(s)	779
SspMI	CTAG	6 cut(s)	231, 237, 366, 521, 920, 924
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	5 cut(s)	55, 197, 432, 457, 855
TaaI	ACNGT	2 cut(s)	449, 1069
TaiI	ACGT	2 cut(s)	556, 804
TaqI	TCGA	5 cut(s)	5, 255, 344, 550, 1135
TasI	AATT	7 cut(s)	18, 23, 93, 287, 749, 1038, 1079
TatI	WGTACW	1 cut(s)	962
TauI	GCSGC	1 cut(s)	691
TfiI	GAWTC	2 cut(s)	547, 956
Tru1I	TTAA	8 cut(s)	21, 74, 156, 396, 444, 699, 942, 1041
Tru9I	TTAA	8 cut(s)	21, 74, 156, 396, 444, 699, 942, 1041
TscAI	CASTG	2 cut(s)	454, 1080
TseFI	GTSAC	1 cut(s)	797
TseI	GCWGC	1 cut(s)	805
Tsp45I	GTSAC	1 cut(s)	797
TspDTI	ATGAA	4 cut(s)	263, 291, 531, 660
TspGWI	ACGGA	1 cut(s)	911
TspRI	CASTG	2 cut(s)	454, 1080
VpaK11BI	GGWCC	1 cut(s)	853
XapI	RAATTY	4 cut(s)	23, 287, 749, 1079
XceI	RCATGY	1 cut(s)	1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1072
XmnI	GAANNNNTTC	1 cut(s)	1117
XspI	CTAG	6 cut(s)	231, 237, 366, 521, 920, 924
ZrmI	AGTACT	1 cut(s)	964

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.