Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019381

Physical Location & Seq

Genomic Coordinates Reverse (-)

88629061 .. 88630326

Gene Structure 1266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00151360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTCGAGGGGTGAACTAATTAAGTTTGCTAAGTACAAGGCTTCAGTCATAGACCCCGGCACTCTTGGACTTTTAACCATGACAGAAAATAAAATTGAGTTCTGTGCCGATCCCAAATATGCCACAAAGCTATTTGGAGTGGGGCTTGAACATATTAAAGGACATCAACACACCAAAGAAGGATCAAATAAACCAGCCTGGCTAAATCTCAACACAGATAAGGATGGGACTAGTACTAGGTACATCTTTGAGCTCGAGAGTTATCCGGATCTTCATGAATCCGTTGAATTTTTATGCAAGTTGCTTCTTGAGTTTAGCTGTAGAAAAGTTGGTTACAAAAGTTCGATGATATTTGACACCAAGCCTAGTAAAAAGGTTACATTTACAGATTTTACTGAAGAGATTAAGCACCGGATCTTTGCTCTGAGGCCAGCTGTGTACCAGGCATATCTTAACAGCGTAGTTCCCGGTAAGACCAAAGAGCATGACTTCTGGAGAAAGTATTTCAATGCTGAACAGGTCCGAATGTATAGTGCAAAGAATGTTGTTGCAGCTGAAGCAGAAGCTACTGAGGATGAGGAAAAGGCAGTTTTTTTGAAGGATGATGAACTAGTTGCAAGGGAAGCTCGTAGGAAGATTCGACGTGTTGATCCAACTTTGGATATGGTAGCTGATCAAAGGGATGATCATACACATCTTCCTTTGCATGGGATCTTTCACCACGACATAAATGATGAAGAAGTGCAGAATAATAATCAAAAGAGGTGGAGGACTTTGCGGCAAGATGTTAACAGACAAGGGGCTGTTCTTCTTCATGGAATAAGCGCTGTGGAAGAGGAATTTACACTGCGTAGGTCAAAACAGGAATATTCTGATGATGAGAGTAGTGATGTGCAGCAGGAGAAGAGACTTGATAGGATTAGTTGGATAACTGAGATAGAGGACCTGGAAGAACCTCATTCTGTTGCTCCATTATGTTTAGATATGGATCTTTGGGACTACTCGGAACTAGCTAGCGCTAATGCAGGGCTTAAAACTTTGGAGGATTCAAGTACTGGAAGTGAACAAAATAAAAAGGTGGTTTCTGCTCAGGAAGCATACGGCTCTTTGAGGGAGTCTATATCTGAAATTCAGAGCATTGGGCTGAGCAATGCCACAGTTGGACTGGAATTCAATGTTGAGGACTTTCTCAAGGAAGTAGGAAAAACTTCAGTTATCAAGGATCGACCTGCGACAGATATGGACATGTTGCCCAAAACTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0000439 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005675 GO:0006139 GO:0006259 GO:0006281 GO:0006351 GO:0006355 GO:0006357 GO:0006360 GO:0006366 GO:0006464 GO:0006468 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0016070 GO:0016310 GO:0016591 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032774 GO:0032806 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070816 GO:0071704 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1902494 GO:1902554 GO:1902911 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03022 ko03420 ko05203 map03022 map03420 map05203

Pfam Domains

Protein Families

BSD PH_TFIIH

Protein Analysis

421

Amino Acids

48.15

Weight (kDa)

5.39

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSD	PF03909	130 - 171	4.5e-06	BSD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019381)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0090241
rosa_laevigata	RLG00000016090
rosa_multiflora	Rmu_sc0000436.1_g000001 Rmu_sc0012828.1_g000002
rosa_roxburghii	Rroxscaffold_2G00151360
rosa_rugosa	Rorug02G0005600
rosa_samantha	Rh2DG051600
rosa_wichuraiana	Rw2G004520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1237
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	1 cut(s)	778
AclWI	GGATC	8 cut(s)	104, 190, 276, 422, 644, 719, 996, 1230
AcsI	RAATTY	4 cut(s)	287, 839, 1128, 1169
AcuI	CTGAAG	4 cut(s)	27, 417, 576, 1194
AfaI	GTAC	5 cut(s)	35, 235, 242, 440, 1054
AfeI	AGCGCT	2 cut(s)	826, 1018
AfiI	CCNNNNNNNGG	1 cut(s)	707
AflIII	ACRYGT	2 cut(s)	643, 1245
AgsI	TTSAA	6 cut(s)	149, 287, 508, 598, 1050, 1174
AhlI	ACTAGT	2 cut(s)	230, 610
AjiI	CACGTC	1 cut(s)	644
AjnI	CCWGG	3 cut(s)	197, 441, 945
AluBI	AGCT	9 cut(s)	130, 253, 318, 434, 554, 566, 626, 671, 1013
AluI	AGCT	9 cut(s)	130, 253, 318, 434, 554, 566, 626, 671, 1013
Alw21I	GWGCWC	1 cut(s)	255
Alw26I	GTCTC	1 cut(s)	901
AlwI	GGATC	8 cut(s)	104, 190, 276, 422, 644, 719, 996, 1230
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	265
Aor51HI	AGCGCT	2 cut(s)	826, 1018
AoxI	GGCC	1 cut(s)	428
ApeKI	GCWGC	2 cut(s)	551, 895
ApoI	RAATTY	4 cut(s)	287, 839, 1128, 1169
Asp700I	GAANNNNTTC	1 cut(s)	1207
AspLEI	GCGC	2 cut(s)	827, 1019
AspS9I	GGNCC	2 cut(s)	520, 943
AsuC2I	CCSGG	2 cut(s)	57, 468
AsuHPI	GGTGA	2 cut(s)	23, 710
AsuNHI	GCTAGC	1 cut(s)	1013
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	520, 943
BanII	GRGCYC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	563, 907
BccI	CCATC	1 cut(s)	218
BceAI	ACGGC	1 cut(s)	1117
BciT130I	CCWGG	3 cut(s)	199, 443, 947
BclI	TGATCA	2 cut(s)	673, 685
BcnI	CCSGG	2 cut(s)	57, 468
BcoDI	GTCTC	1 cut(s)	901
BcuI	ACTAGT	2 cut(s)	230, 610
BfaI	CTAG	6 cut(s)	231, 237, 366, 611, 1010, 1014
BfmI	CTRYAG	1 cut(s)	319
BfoI	RGCGCY	2 cut(s)	828, 1020
BfuAI	ACCTGC	1 cut(s)	1237
BisI	GCNGC	3 cut(s)	552, 779, 896
BlpI	GCTNAGC	1 cut(s)	1145
BlsI	GCNGC	3 cut(s)	553, 780, 897
BmcAI	AGTACT	2 cut(s)	235, 1054
Bme1390I	CCNGG	5 cut(s)	57, 199, 443, 468, 947
Bme18I	GGWCC	2 cut(s)	520, 943
BmeT110I	CYCGRG	1 cut(s)	254
BmgBI	CACGTC	1 cut(s)	644
BmgT120I	GGNCC	2 cut(s)	520, 943
BmrFI	CCNGG	5 cut(s)	57, 199, 443, 468, 947
BmtI	GCTAGC	1 cut(s)	1017
BpmI	CTGGAG	1 cut(s)	514
Bpu10I	CCTNAGC	1 cut(s)	1089
Bpu1102I	GCTNAGC	1 cut(s)	1145
BpuEI	CTTGAG	2 cut(s)	329, 1175
BpuMI	CCSGG	2 cut(s)	57, 468
BsaBI	GATNNNNATC	1 cut(s)	987
BsaJI	CCNNGG	1 cut(s)	55
BsaWI	WCCGGW	2 cut(s)	265, 411
Bsc4I	CCNNNNNNNGG	1 cut(s)	707
Bse1I	ACTGG	2 cut(s)	1060, 1170
Bse3DI	GCAATG	1 cut(s)	1156
Bse8I	GATNNNNATC	1 cut(s)	987
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	3 cut(s)	199, 443, 947
BseDI	CCNNGG	1 cut(s)	55
BseGI	GGATG	4 cut(s)	229, 580, 607, 688
BseJI	GATNNNNATC	1 cut(s)	987
BseLI	CCNNNNNNNGG	1 cut(s)	707
BseMI	GCAATG	1 cut(s)	1156
BseMII	CTCAG	5 cut(s)	416, 561, 924, 1103, 1136
BseNI	ACTGG	2 cut(s)	1060, 1170
BseXI	GCAGC	2 cut(s)	563, 907
BsgI	GTGCAG	2 cut(s)	764, 914
BshFI	GGCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	4 cut(s)	57, 266, 412, 468
BslFI	GGGAC	2 cut(s)	241, 1010
BslI	CCNNNNNNNGG	1 cut(s)	707
BsmAI	GTCTC	1 cut(s)	901
BsmFI	GGGAC	2 cut(s)	241, 1010
BsnI	GGCC	1 cut(s)	430
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	265
Bsp1720I	GCTNAGC	1 cut(s)	1145
BspACI	CCGC	1 cut(s)	778
BspANI	GGCC	1 cut(s)	430
BspCNI	CTCAG	5 cut(s)	417, 562, 925, 1102, 1137
BspEI	TCCGGA	1 cut(s)	265
BspHI	TCATGA	1 cut(s)	274
BspMI	ACCTGC	1 cut(s)	1237
BspOI	GCTAGC	1 cut(s)	1017
BspPI	GGATC	8 cut(s)	104, 190, 276, 422, 644, 719, 996, 1230
BsrDI	GCAATG	1 cut(s)	1156
BsrI	ACTGG	2 cut(s)	1060, 1170
BssECI	CCNNGG	1 cut(s)	55
Bst2UI	CCWGG	3 cut(s)	199, 443, 947
Bst4CI	ACNGT	1 cut(s)	1159
Bst6I	CTCTTC	3 cut(s)	393, 828, 899
BstC8I	GCNNGC	2 cut(s)	432, 1015
BstDEI	CTNAG	7 cut(s)	30, 425, 570, 933, 1089, 1145, 1260
BstF5I	GGATG	4 cut(s)	229, 580, 607, 688
BstH2I	RGCGCY	2 cut(s)	828, 1020
BstHHI	GCGC	2 cut(s)	827, 1019
BstMAI	GTCTC	1 cut(s)	901
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 623, 1094
BstNI	CCWGG	3 cut(s)	199, 443, 947
BstNSI	RCATGY	1 cut(s)	1249
BstSCI	CCNGG	5 cut(s)	55, 197, 441, 466, 945
BstSFI	CTRYAG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	563, 907
BstX2I	RGATCY	4 cut(s)	268, 414, 711, 988
BstYI	RGATCY	4 cut(s)	268, 414, 711, 988
BsuRI	GGCC	1 cut(s)	430
BtrI	CACGTC	1 cut(s)	644
BtsCI	GGATG	4 cut(s)	229, 580, 607, 688
BtsI	GCAGTG	1 cut(s)	845
BtsIMutI	CAGTG	1 cut(s)	845
BveI	ACCTGC	1 cut(s)	1237
Cac8I	GCNNGC	2 cut(s)	432, 1015
CciI	TCATGA	1 cut(s)	274
CfoI	GCGC	2 cut(s)	827, 1019
Cfr13I	GGNCC	2 cut(s)	520, 943
Csp6I	GTAC	5 cut(s)	34, 234, 241, 439, 1053
CspCI	CAANNNNNGTGG	2 cut(s)	746, 781
CviAII	CATG	6 cut(s)	79, 275, 485, 707, 815, 1246
CviQI	GTAC	5 cut(s)	34, 234, 241, 439, 1053
DdeI	CTNAG	7 cut(s)	30, 425, 570, 933, 1089, 1145, 1260
Eam1104I	CTCTTC	3 cut(s)	393, 828, 899
EarI	CTCTTC	3 cut(s)	393, 828, 899
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	520, 943
Eco47III	AGCGCT	2 cut(s)	826, 1018
Eco53kI	GAGCTC	1 cut(s)	253
Eco57I	CTGAAG	4 cut(s)	27, 417, 576, 1194
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	943
EcoRI	GAATTC	1 cut(s)	1169
EcoRII	CCWGG	3 cut(s)	197, 441, 945
EcoT38I	GRGCYC	1 cut(s)	255
FaeI	CATG	6 cut(s)	82, 278, 488, 710, 818, 1249
FaqI	GGGAC	2 cut(s)	241, 1010
FatI	CATG	6 cut(s)	78, 274, 484, 706, 814, 1245
FbaI	TGATCA	2 cut(s)	673, 685
Fnu4HI	GCNGC	3 cut(s)	552, 779, 896
FokI	GGATG	4 cut(s)	236, 587, 614, 695
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	3 cut(s)	552, 779, 896
FspBI	CTAG	6 cut(s)	231, 237, 366, 611, 1010, 1014
GlaI	GCGC	2 cut(s)	826, 1018
GluI	GCNGC	3 cut(s)	552, 779, 896
GsuI	CTGGAG	1 cut(s)	514
HaeII	RGCGCY	2 cut(s)	828, 1020
HaeIII	GGCC	1 cut(s)	430
HapII	CCGG	4 cut(s)	57, 266, 412, 468
HhaI	GCGC	2 cut(s)	827, 1019
Hin1II	CATG	6 cut(s)	82, 278, 488, 710, 818, 1249
Hin6I	GCGC	2 cut(s)	825, 1017
HinP1I	GCGC	2 cut(s)	825, 1017
HincII	GTYRAC	1 cut(s)	790
HindII	GTYRAC	1 cut(s)	790
HinfI	GANTC	4 cut(s)	278, 637, 1046, 1115
HpaI	GTTAAC	1 cut(s)	790
HpaII	CCGG	4 cut(s)	57, 266, 412, 468
HphI	GGTGA	2 cut(s)	23, 710
Hpy166II	GTNNAC	4 cut(s)	14, 439, 790, 1064
Hpy188I	TCNGA	6 cut(s)	426, 524, 874, 1006, 1126, 1134
Hpy188III	TCNNGA	6 cut(s)	256, 266, 275, 308, 493, 1091
Hpy8I	GTNNAC	4 cut(s)	14, 439, 790, 1064
Hpy99I	CGWCG	1 cut(s)	645
HpyAV	CCTTC	2 cut(s)	173, 592
HpyCH4III	ACNGT	1 cut(s)	1159
HpyCH4IV	ACGT	1 cut(s)	643
HpyCH4V	TGCA	8 cut(s)	297, 536, 551, 617, 706, 745, 895, 1025
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 623, 1094
HpyF3I	CTNAG	7 cut(s)	30, 425, 570, 933, 1089, 1145, 1260
HpySE526I	ACGT	1 cut(s)	643
Hsp92II	CATG	6 cut(s)	82, 278, 488, 710, 818, 1249
HspAI	GCGC	2 cut(s)	825, 1017
Kpn2I	TCCGGA	1 cut(s)	265
Ksp22I	TGATCA	2 cut(s)	673, 685
KspAI	GTTAAC	1 cut(s)	790
LmnI	GCTCC	1 cut(s)	973
Lsp1109I	GCAGC	2 cut(s)	563, 907
MaeI	CTAG	6 cut(s)	231, 237, 366, 611, 1010, 1014
MaeII	ACGT	1 cut(s)	643
MaeIII	GTNAC	2 cut(s)	332, 376
MflI	RGATCY	4 cut(s)	268, 414, 711, 988
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	6 cut(s)	18, 93, 287, 839, 1128, 1169
MlyI	GAGTC	1 cut(s)	1124
MmeI	TCCRAC	3 cut(s)	677, 905, 1141
MroI	TCCGGA	1 cut(s)	265
MroXI	GAANNNNTTC	1 cut(s)	1207
MseI	TTAA	7 cut(s)	21, 74, 156, 405, 453, 789, 1032
MspA1I	CMGCKG	2 cut(s)	434, 554
MspI	CCGG	4 cut(s)	57, 266, 412, 468
MspR9I	CCNGG	5 cut(s)	57, 199, 443, 468, 947
MvaI	CCWGG	3 cut(s)	199, 443, 947
MwoI	GCNNNNNNNGC	3 cut(s)	557, 623, 1094
NciI	CCSGG	2 cut(s)	57, 468
NheI	GCTAGC	1 cut(s)	1013
NlaIII	CATG	6 cut(s)	82, 278, 488, 710, 818, 1249
NspI	RCATGY	1 cut(s)	1249
PaeR7I	CTCGAG	1 cut(s)	254
PagI	TCATGA	1 cut(s)	274
PciI	ACATGT	1 cut(s)	1245
PdmI	GAANNNNTTC	1 cut(s)	1207
PfeI	GAWTC	3 cut(s)	278, 637, 1046
PkrI	GCNGC	3 cut(s)	553, 780, 897
PleI	GAGTC	1 cut(s)	1123
PpsI	GAGTC	1 cut(s)	1123
PpuMI	RGGWCCY	1 cut(s)	943
PscI	ACATGT	1 cut(s)	1245
Psp124BI	GAGCTC	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	943
Psp6I	CCWGG	3 cut(s)	197, 441, 945
PspGI	CCWGG	3 cut(s)	197, 441, 945
PspPI	GGNCC	2 cut(s)	520, 943
PspPPI	RGGWCCY	1 cut(s)	943
PsuI	RGATCY	4 cut(s)	268, 414, 711, 988
PvuII	CAGCTG	2 cut(s)	434, 554
RsaI	GTAC	5 cut(s)	35, 235, 242, 440, 1054
RsaNI	GTAC	5 cut(s)	34, 234, 241, 439, 1053
SacI	GAGCTC	1 cut(s)	255
SaqAI	TTAA	7 cut(s)	21, 74, 156, 405, 453, 789, 1032
SatI	GCNGC	3 cut(s)	552, 779, 896
Sau96I	GGNCC	2 cut(s)	520, 943
ScaI	AGTACT	2 cut(s)	235, 1054
SchI	GAGTC	1 cut(s)	1124
ScrFI	CCNGG	5 cut(s)	57, 199, 443, 468, 947
SduI	GDGCHC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	319
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	520, 943
SlaI	CTCGAG	1 cut(s)	254
SmlI	CTYRAG	3 cut(s)	254, 308, 1190
SmoI	CTYRAG	3 cut(s)	254, 308, 1190
SpeI	ACTAGT	2 cut(s)	230, 610
Sse9I	AATT	6 cut(s)	18, 93, 287, 839, 1128, 1169
SsiI	CCGC	1 cut(s)	778
SspI	AATATT	1 cut(s)	869
SspMI	CTAG	6 cut(s)	231, 237, 366, 611, 1010, 1014
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	5 cut(s)	55, 197, 441, 466, 945
TaaI	ACNGT	1 cut(s)	1159
TaiI	ACGT	1 cut(s)	646
TaqI	TCGA	5 cut(s)	5, 255, 344, 640, 1225
TasI	AATT	6 cut(s)	18, 93, 287, 839, 1128, 1169
TatI	WGTACW	3 cut(s)	33, 233, 1052
TauI	GCSGC	1 cut(s)	781
TfiI	GAWTC	3 cut(s)	278, 637, 1046
Tru1I	TTAA	7 cut(s)	21, 74, 156, 405, 453, 789, 1032
Tru9I	TTAA	7 cut(s)	21, 74, 156, 405, 453, 789, 1032
TscAI	CASTG	1 cut(s)	852
TseI	GCWGC	2 cut(s)	551, 895
TspDTI	ATGAA	5 cut(s)	263, 291, 621, 750, 803
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	1 cut(s)	852
VpaK11BI	GGWCC	2 cut(s)	520, 943
XapI	RAATTY	4 cut(s)	287, 839, 1128, 1169
XceI	RCATGY	1 cut(s)	1249
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1162
XhoI	CTCGAG	1 cut(s)	254
XmnI	GAANNNNTTC	1 cut(s)	1207
XspI	CTAG	6 cut(s)	231, 237, 366, 611, 1010, 1014
ZrmI	AGTACT	2 cut(s)	235, 1054

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.