RchiOBHm_Chr2g0091061

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0020143
Physical Location & Seq
Forward (+)
4770484 .. 4771246
763 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGTCGTCAGTTTCTTATTTATCTCAAGTACGGTCACACCAGAGCCGCCCCAAAAGCCACCGGAAAATTGGGTTCCGAAAGCGATGTGTGATGATGGCAAAGCACCAGAAAACAAGGTTCTACATCCTCGGACGCTGCGTTTCGATGCTCCTCTGCTGGCACGATCACTCCATATCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

60

Amino Acids

7.14

Weight (kDa)

10.66

Isoelectric Point (pI)

63.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 34 - 52 2.1e-10 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020143)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G23635 AT4G13395
malus_domestica MD02G1062300.v1.1
prunus_persica Prupe.7G227100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0091061
rosa_wichuraiana Rw2G005090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 46
AfaI GTAC 1 cut(s) 30
ApeKI GCWGC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 88
BisI GCNGC 2 cut(s) 46, 136
BlsI GCNGC 2 cut(s) 47, 137
BmiI GGNNCC 1 cut(s) 74
BmsI GCATC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 127
BsaWI WCCGGW 1 cut(s) 60
BsaXI ACNNNNNCTCC 2 cut(s) 152, 182
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 123
BseRI GAGGAG 1 cut(s) 140
BseXI GCAGC 1 cut(s) 122
BsiSI CCGG 1 cut(s) 61
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 127
BssMI GATC 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 123
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 1 cut(s) 54
BstV1I GCAGC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 123
Cac8I GCNNGC 1 cut(s) 158
CseI GACGC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 29
CviJI RGCY 2 cut(s) 45, 57
CviKI_1 RGCY 2 cut(s) 45, 57
CviQI GTAC 1 cut(s) 29
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
FaiI YATR 1 cut(s) 173
Fnu4HI GCNGC 2 cut(s) 46, 136
FokI GGATG 1 cut(s) 110
Fsp4HI GCNGC 2 cut(s) 46, 136
GluI GCNGC 2 cut(s) 46, 136
HapII CCGG 1 cut(s) 61
HgaI GACGC 1 cut(s) 141
HpaII CCGG 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 77, 131, 178
HpyCH4III ACNGT 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 54
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 153
LpnPI CCDG 4 cut(s) 53, 74, 119, 142
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 33
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MluCI AATT 1 cut(s) 66
MnlI CCTC 2 cut(s) 137, 161
MspI CCGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 54
NdeII GATC 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 74
NmuCI GTSAC 1 cut(s) 33
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PkrI GCNGC 2 cut(s) 47, 137
PspN4I GGNNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 30
RsaNI GTAC 1 cut(s) 29
SatI GCNGC 2 cut(s) 46, 136
Sau3AI GATC 1 cut(s) 163
SetI ASST 1 cut(s) 119
SfaNI GCATC 1 cut(s) 135
SgeI CNNG 8 cut(s) 38, 52, 73, 118, 126, 140, 169, 173
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
Sse9I AATT 1 cut(s) 66
SsiI CCGC 1 cut(s) 46
TaaI ACNGT 1 cut(s) 33
TaqI TCGA 1 cut(s) 143
TasI AATT 1 cut(s) 66
TauI GCSGC 1 cut(s) 48
TseFI GTSAC 1 cut(s) 33
TseI GCWGC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 33
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.