Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022668

Physical Location & Seq

Genomic Coordinates Forward (+)

13721971 .. 13725194

Gene Structure 3224 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGTTAAATTCTGGTTCAGCCATTGGTATCAGCCCTTGGTGTATATTGGTAGACACCGCACAGAATTGGGAGCGCGCTTTTGTCAAGAATCAACAGAAGTTGGTTCAAACTTCCACAAATTTGGTAGATGAAGTTTGGAAAAGTCTGCCCCCTCAGGAAATTAGTCCTGTATTTATTCATCCTTTGGAATTTGCTGGTCGTTTTGTAGCAGATAAGTTAAAGGATGTGAGAAAAAAGCTCTTCCAAGTGAAAGCTCATAGTATAATCATTTTAGCACTTGATGAGGTTTGCTGGTTGTATAATATTCGCAGGACTGATGTTGATTACAGTCTAGTTGTTCATGCCTTTGCCATAGTTACTCTGAACTCAGCTTTCTTCTATGTAGACAAAAGGAAGGTTTCATCTGAGGTAAACTCATACTTGGAAACGAACGGGATTGAAGTTTGGGACTATAAAGCAGTGAGCGCAGATGTCAGCTTGCTTGCATCTAATCAGCTTAAACCTTCTATTCAAGGCAAGGGAACGGAAACTGCATTAGCAGGAAATGGTACAATCAAAGCAGAAGAAAGTAACAATGACCTCATATGGGCTAACCTGGGTTATTGCTATTATGCTTTGTATTCAAAGCTAAATCCTGACAAGGTTCTCTTCCAGCAGTCATCTTTGGCCCTTGCAAAAGCTCTAAAGAACCCAATTGAGTTGGAAGGGTTAAAGAATGCTCACATTCGAGATGGTACTGTTGTTGTGCAATATCATGTCTGGTTGGATAAACAGGAGATGTATGGAGCTTCTGGTTTCTTTTTGGAGGAGGAAACAGATAAGAAAAAACAGTCGCAAGTTTGTTTTCTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006807 GO:0006810 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008270 GO:0009914 GO:0009926 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0030145 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

284

Amino Acids

32.02

Weight (kDa)

6.0

Isoelectric Point (pI)

30.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	50 - 233	8e-37	Creatinase/Prolidase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0022668)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102301
rosa_samantha	Rh2AG154300 Rh2BG160400 Rh2DG159900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 384
AccII	CGCG	1 cut(s)	75
AciI	CCGC	1 cut(s)	57
AcsI	RAATTY	3 cut(s)	7, 118, 188
AfaI	GTAC	2 cut(s)	550, 736
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	107, 440, 512, 624
AjnI	CCWGG	1 cut(s)	594
AluBI	AGCT	8 cut(s)	238, 254, 371, 477, 496, 628, 680, 788
AluI	AGCT	8 cut(s)	238, 254, 371, 477, 496, 628, 680, 788
AoxI	GGCC	1 cut(s)	666
ApoI	RAATTY	3 cut(s)	7, 118, 188
AspLEI	GCGC	3 cut(s)	75, 77, 467
AspS9I	GGNCC	1 cut(s)	667
AxyI	CCTNAGG	1 cut(s)	153
BaeI	ACNNNNGTAYC	2 cut(s)	726, 759
BccI	CCATC	1 cut(s)	725
BciT130I	CCWGG	1 cut(s)	596
BfaI	CTAG	1 cut(s)	332
Bme1390I	CCNGG	1 cut(s)	596
BmgT120I	GGNCC	1 cut(s)	667
BmrFI	CCNGG	1 cut(s)	596
BmsI	GCATC	1 cut(s)	494
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
BsaJI	CCNNGG	2 cut(s)	35, 595
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse21I	CCTNAGG	1 cut(s)	153
BseBI	CCWGG	1 cut(s)	596
BseDI	CCNNGG	2 cut(s)	35, 595
BseGI	GGATG	2 cut(s)	178, 229
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	167, 381, 396
BsePI	GCGCGC	1 cut(s)	73
BseRI	GAGGAG	1 cut(s)	821
Bsh1236I	CGCG	1 cut(s)	75
BshFI	GGCC	1 cut(s)	668
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmFI	GGGAC	1 cut(s)	461
BsmI	GAATGC	1 cut(s)	721
BsnI	GGCC	1 cut(s)	668
BspACI	CCGC	1 cut(s)	57
BspANI	GGCC	1 cut(s)	668
BspCNI	CTCAG	3 cut(s)	166, 380, 397
BspFNI	CGCG	1 cut(s)	75
BspQI	GCTCTTC	1 cut(s)	245
BssECI	CCNNGG	2 cut(s)	35, 595
BssHII	GCGCGC	1 cut(s)	73
BssT1I	CCWWGG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	596
Bst4CI	ACNGT	3 cut(s)	329, 739, 831
Bst6I	CTCTTC	2 cut(s)	245, 653
BstC8I	GCNNGC	3 cut(s)	75, 479, 483
BstDEI	CTNAG	3 cut(s)	153, 367, 405
BstF5I	GGATG	2 cut(s)	178, 229
BstFNI	CGCG	1 cut(s)	75
BstHHI	GCGC	3 cut(s)	75, 77, 467
BstMWI	GCNNNNNNNGC	1 cut(s)	464
BstNI	CCWGG	1 cut(s)	596
BstSCI	CCNGG	1 cut(s)	594
BstUI	CGCG	1 cut(s)	75
BstXI	CCANNNNNNTGG	1 cut(s)	121
Bsu36I	CCTNAGG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	668
BtsCI	GGATG	2 cut(s)	178, 229
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	3 cut(s)	75, 479, 483
CfoI	GCGC	3 cut(s)	75, 77, 467
Cfr13I	GGNCC	1 cut(s)	667
Csp6I	GTAC	2 cut(s)	549, 735
CviAII	CATG	2 cut(s)	341, 755
CviQI	GTAC	2 cut(s)	549, 735
DdeI	CTNAG	3 cut(s)	153, 367, 405
Eam1104I	CTCTTC	2 cut(s)	245, 653
EarI	CTCTTC	2 cut(s)	245, 653
Eco130I	CCWWGG	1 cut(s)	35
Eco81I	CCTNAGG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	594
EcoT14I	CCWWGG	1 cut(s)	35
ErhI	CCWWGG	1 cut(s)	35
FaeI	CATG	2 cut(s)	344, 758
FalI	AAGNNNNNCTT	2 cut(s)	632, 664
FaqI	GGGAC	1 cut(s)	461
FatI	CATG	2 cut(s)	340, 754
FauNDI	CATATG	1 cut(s)	584
FblI	GTMKAC	2 cut(s)	51, 384
FokI	GGATG	2 cut(s)	165, 236
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	3 cut(s)	74, 76, 466
HaeIII	GGCC	1 cut(s)	668
HhaI	GCGC	3 cut(s)	75, 77, 467
Hin1II	CATG	2 cut(s)	344, 758
Hin6I	GCGC	3 cut(s)	73, 75, 465
HinP1I	GCGC	3 cut(s)	73, 75, 465
HinfI	GANTC	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	52, 385, 412
Hpy188I	TCNGA	2 cut(s)	363, 406
Hpy188III	TCNNGA	5 cut(s)	85, 155, 635, 728, 848
Hpy8I	GTNNAC	3 cut(s)	52, 385, 412
HpyAV	CCTTC	3 cut(s)	388, 513, 698
HpyCH4III	ACNGT	3 cut(s)	329, 739, 831
HpyCH4V	TGCA	4 cut(s)	485, 533, 674, 748
HpyF10VI	GCNNNNNNNGC	1 cut(s)	464
HpyF3I	CTNAG	3 cut(s)	153, 367, 405
Hsp92II	CATG	2 cut(s)	344, 758
HspAI	GCGC	3 cut(s)	73, 75, 465
LguI	GCTCTTC	1 cut(s)	245
LmnI	GCTCC	2 cut(s)	70, 785
LweI	GCATC	1 cut(s)	494
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	2 cut(s)	355, 569
MboII	GAAGA	4 cut(s)	232, 367, 575, 640
MfeI	CAATTG	1 cut(s)	693
MluCI	AATT	6 cut(s)	7, 64, 118, 159, 188, 693
MmeI	TCCRAC	2 cut(s)	681, 744
MnlI	CCTC	6 cut(s)	162, 277, 400, 590, 799, 802
MseI	TTAA	4 cut(s)	5, 218, 498, 710
MspR9I	CCNGG	1 cut(s)	596
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	1 cut(s)	721
MvaI	CCWGG	1 cut(s)	596
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	464
NdeI	CATATG	1 cut(s)	584
NlaIII	CATG	2 cut(s)	344, 758
PauI	GCGCGC	1 cut(s)	73
PciSI	GCTCTTC	1 cut(s)	245
PctI	GAATGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	594
PspGI	CCWGG	1 cut(s)	594
PspPI	GGNCC	1 cut(s)	667
PteI	GCGCGC	1 cut(s)	73
RsaI	GTAC	2 cut(s)	550, 736
RsaNI	GTAC	2 cut(s)	549, 735
SapI	GCTCTTC	1 cut(s)	245
SaqAI	TTAA	4 cut(s)	5, 218, 498, 710
Sau96I	GGNCC	1 cut(s)	667
ScrFI	CCNGG	1 cut(s)	596
SfaNI	GCATC	1 cut(s)	494
Sse9I	AATT	6 cut(s)	7, 64, 118, 159, 188, 693
SsiI	CCGC	1 cut(s)	57
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	1 cut(s)	594
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	329, 739, 831
TaqI	TCGA	1 cut(s)	727
TasI	AATT	6 cut(s)	7, 64, 118, 159, 188, 693
TfiI	GAWTC	1 cut(s)	88
Tru1I	TTAA	4 cut(s)	5, 218, 498, 710
Tru9I	TTAA	4 cut(s)	5, 218, 498, 710
TscAI	CASTG	1 cut(s)	465
TspDTI	ATGAA	4 cut(s)	144, 167, 329, 390
TspGWI	ACGGA	1 cut(s)	539
TspRI	CASTG	1 cut(s)	465
XapI	RAATTY	3 cut(s)	7, 118, 188
XmiI	GTMKAC	2 cut(s)	51, 384
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.