Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0022668

Physical Location & Seq

Genomic Coordinates Forward (+)

13836863 .. 13845464

Gene Structure 8602 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG160400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGCCGGGCATCTGAGGTTCAGAACTCATCTTTGACTTGGATCCTCTTCTTCGTGAAGGTAGCTGTGGGAAAGGGAGATAGAAATGGCCTTAGCTATTGTGTCACGCGGTTTTGTTTTGTTCCAGCAACACAGCAACTTAGTGACCAGTGGCAGCTTATGCGAATGGGGGAAGACCCTGCCGTAGATGTCTGGATGGCAGATGTAAAGTCATACTTGGAAACGAACGGGATTAAAGTTTGGGACTATAAAGCAGTGAGCGCAGATGTCAGCTTGCTTGCATCTAATCAGCTTAAACCTTCTATTCAAGGCAAGGGAACGGAAACTGCATTAGCAAGAAATGGTACAATCAAAGCAGAAGAAAGTAATAATGACCTCATATGGGCTGACCCGGGTTATTGCTATTATGCTTTGTATTCAAAGCTAAATCCTGACAAGGTTCTCTTCCAGCAGTCATCTTTGGCCCTTGCAAAAGCTCTAAAGAACCCAATTGAGTTGGAAGGGTTAAAGAATGCTCACATTCGAGATGGTACGCTTGTTGTGCAATATCATGTCTGGTTGGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006807 GO:0006810 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008270 GO:0009914 GO:0009926 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0030145 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

189

Amino Acids

21.11

Weight (kDa)

6.72

Isoelectric Point (pI)

16.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	67 - 165	1.1e-06	Creatinase/Prolidase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0022668)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102301
rosa_samantha	Rh2AG154300 Rh2BG160400 Rh2DG159900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	109
AciI	CCGC	1 cut(s)	109
AclWI	GGATC	2 cut(s)	37, 50
AfaI	GTAC	2 cut(s)	346, 532
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	308, 420
AluBI	AGCT	7 cut(s)	65, 96, 157, 273, 292, 424, 476
AluI	AGCT	7 cut(s)	65, 96, 157, 273, 292, 424, 476
AlwI	GGATC	2 cut(s)	37, 50
Ama87I	CYCGRG	1 cut(s)	391
AoxI	GGCC	3 cut(s)	4, 88, 462
ApeKI	GCWGC	1 cut(s)	154
AspLEI	GCGC	1 cut(s)	263
AspS9I	GGNCC	2 cut(s)	4, 463
AsuC2I	CCSGG	3 cut(s)	8, 392, 393
AvaI	CYCGRG	1 cut(s)	391
BaeI	ACNNNNGTAYC	2 cut(s)	522, 555
BamHI	GGATCC	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	180
BbvI	GCAGC	1 cut(s)	166
BccI	CCATC	2 cut(s)	190, 521
BceAI	ACGGC	1 cut(s)	167
BcnI	CCSGG	3 cut(s)	8, 392, 393
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	3 cut(s)	8, 392, 393
BmeT110I	CYCGRG	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	4, 463
BmiI	GGNNCC	1 cut(s)	44
BmrFI	CCNGG	3 cut(s)	8, 392, 393
BmsI	GCATC	2 cut(s)	20, 290
BpiI	GAAGAC	1 cut(s)	180
Bpu10I	CCTNAGC	1 cut(s)	92
BpuMI	CCSGG	3 cut(s)	8, 392, 393
BsaJI	CCNNGG	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse1I	ACTGG	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	391
BseGI	GGATG	1 cut(s)	201
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	6
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	1 cut(s)	166
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	3 cut(s)	6, 90, 464
BsiHKCI	CYCGRG	1 cut(s)	391
BsiSI	CCGG	2 cut(s)	7, 392
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	3 cut(s)	6, 90, 464
BsoBI	CYCGRG	1 cut(s)	391
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	109
BspANI	GGCC	3 cut(s)	6, 90, 464
BspCNI	CTCAG	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	37, 50
BsrI	ACTGG	1 cut(s)	148
BssECI	CCNNGG	1 cut(s)	391
BssMI	GATC	1 cut(s)	42
Bst6I	CTCTTC	2 cut(s)	53, 449
BstAPI	GCANNNNNTGC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	275, 279
BstDEI	CTNAG	3 cut(s)	15, 92, 140
BstF5I	GGATG	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	1 cut(s)	263
BstKTI	GATC	1 cut(s)	45
BstMBI	GATC	1 cut(s)	42
BstMWI	GCNNNNNNNGC	3 cut(s)	160, 260, 541
BstSCI	CCNGG	3 cut(s)	6, 390, 391
BstUI	CGCG	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	180
BstX2I	RGATCY	1 cut(s)	42
BstYI	RGATCY	1 cut(s)	42
BsuRI	GGCC	3 cut(s)	6, 90, 464
BtsCI	GGATG	1 cut(s)	201
BtsI	GCAGTG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	155, 261
Cac8I	GCNNGC	2 cut(s)	275, 279
CfoI	GCGC	1 cut(s)	263
Cfr13I	GGNCC	2 cut(s)	4, 463
Cfr9I	CCCGGG	1 cut(s)	391
Csp6I	GTAC	2 cut(s)	345, 531
CviAII	CATG	1 cut(s)	551
CviQI	GTAC	2 cut(s)	345, 531
DdeI	CTNAG	3 cut(s)	15, 92, 140
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eam1104I	CTCTTC	2 cut(s)	53, 449
EarI	CTCTTC	2 cut(s)	53, 449
Eco88I	CYCGRG	1 cut(s)	391
FaeI	CATG	1 cut(s)	554
FaiI	YATR	7 cut(s)	161, 214, 249, 380, 382, 408, 552
FalI	AAGNNNNNCTT	4 cut(s)	200, 232, 428, 460
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	1 cut(s)	550
FauNDI	CATATG	1 cut(s)	380
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	208
Fsp4HI	GCNGC	1 cut(s)	155
GlaI	GCGC	1 cut(s)	262
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	3 cut(s)	6, 90, 464
HapII	CCGG	2 cut(s)	7, 392
HhaI	GCGC	1 cut(s)	263
Hin1II	CATG	1 cut(s)	554
Hin6I	GCGC	1 cut(s)	261
HinP1I	GCGC	1 cut(s)	261
HpaII	CCGG	2 cut(s)	7, 392
Hpy188I	TCNGA	2 cut(s)	16, 24
Hpy188III	TCNNGA	4 cut(s)	55, 193, 431, 524
HpyAV	CCTTC	3 cut(s)	52, 309, 494
HpyCH4V	TGCA	4 cut(s)	281, 329, 470, 544
HpyF10VI	GCNNNNNNNGC	3 cut(s)	160, 260, 541
HpyF3I	CTNAG	3 cut(s)	15, 92, 140
Hsp92II	CATG	1 cut(s)	554
HspAI	GCGC	1 cut(s)	261
Kzo9I	GATC	1 cut(s)	42
LpnPI	CCDG	9 cut(s)	20, 138, 161, 178, 192, 405, 444, 461, 541
Lsp1109I	GCAGC	1 cut(s)	166
LweI	GCATC	2 cut(s)	20, 290
MaeIII	GTNAC	2 cut(s)	103, 143
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MboII	GAAGA	5 cut(s)	40, 43, 185, 371, 436
MfeI	CAATTG	1 cut(s)	489
MflI	RGATCY	1 cut(s)	42
MluCI	AATT	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	477, 540
MnlI	CCTC	3 cut(s)	10, 56, 386
MseI	TTAA	3 cut(s)	234, 294, 506
MspI	CCGG	2 cut(s)	7, 392
MspR9I	CCNGG	3 cut(s)	8, 392, 393
MunI	CAATTG	1 cut(s)	489
Mva1269I	GAATGC	1 cut(s)	517
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	160, 260, 541
NciI	CCSGG	3 cut(s)	8, 392, 393
NdeI	CATATG	1 cut(s)	380
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	1 cut(s)	554
NlaIV	GGNNCC	1 cut(s)	44
NmuCI	GTSAC	2 cut(s)	103, 143
PctI	GAATGC	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	44
PspPI	GGNCC	2 cut(s)	4, 463
PsuI	RGATCY	1 cut(s)	42
RsaI	GTAC	2 cut(s)	346, 532
RsaNI	GTAC	2 cut(s)	345, 531
SaqAI	TTAA	3 cut(s)	234, 294, 506
SatI	GCNGC	1 cut(s)	155
Sau3AI	GATC	1 cut(s)	42
Sau96I	GGNCC	2 cut(s)	4, 463
ScrFI	CCNGG	3 cut(s)	8, 392, 393
SfaNI	GCATC	2 cut(s)	20, 290
SmaI	CCCGGG	1 cut(s)	393
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	1 cut(s)	109
StyD4I	CCNGG	3 cut(s)	6, 390, 391
TaqI	TCGA	1 cut(s)	523
TasI	AATT	1 cut(s)	489
Tru1I	TTAA	3 cut(s)	234, 294, 506
Tru9I	TTAA	3 cut(s)	234, 294, 506
TscAI	CASTG	2 cut(s)	155, 261
TseFI	GTSAC	2 cut(s)	103, 143
TseI	GCWGC	1 cut(s)	154
Tsp45I	GTSAC	2 cut(s)	103, 143
TspGWI	ACGGA	1 cut(s)	335
TspMI	CCCGGG	1 cut(s)	391
TspRI	CASTG	2 cut(s)	155, 261
XmaI	CCCGGG	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.