Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0022668

Physical Location & Seq

Genomic Coordinates Forward (+)

13559693 .. 13560904

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG159900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGGAGAGCGCTTTTGTCAAGAATCAACAGAAGTTGGTTCAAACTTCCACAAATTTGGTCGTTCTGTAGTAGATAAGTTAAAGGATGTGAGAAAAAATCTCTTCCAAGTGAAAGCTCATGGTATAATCATTTTAGCACTTGATGAGGTTTGCTGGTTGTATAATATTCGCAGGACTGATGTTGATTACAGTCCAGTTGTTCATGCCTTTGCCATAGTTACTCTGAACTCAGCTTTCTTCTATGTAGACAAAAGGAAGGTAAAGTCATACTTGGAAACGAACGGGATTAAAGTTTGGGACTATAAAGCAGTGAGCGCAGATGTCAGCTTGCTTGCATCTAATCAGCTTAAACCTTCTATTCAAGGCAAGGGAACGGAAACTGCATTAGCAAGAAATGGTACAATCAAAGCAGAAGAAAGTAATAATGACCTCATATGGGCTGACCCGGGTTATTGCTATTATGCTTTGTATTCAAAGCTAAATCCTGACAAGGTTCTCTTCCAGCAGTCATCTTTGGCCCTTGCAAAAGCTCTAAAGAACCCAATTGAGTTGGAAGGGTTAAAGAATGCTCACATTCGAGATGGTACGCTTGTTGTGCAATATCATGTCTGGTTGGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006807 GO:0006810 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008270 GO:0009914 GO:0009926 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0030145 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

207

Amino Acids

23.4

Weight (kDa)

8.82

Isoelectric Point (pI)

24.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	20 - 183	6.3e-33	Creatinase/Prolidase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0022668)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102301
rosa_samantha	Rh2AG154300 Rh2BG160400 Rh2DG159900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	53
AfaI	GTAC	2 cut(s)	400, 586
AfeI	AGCGCT	1 cut(s)	11
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	3 cut(s)	42, 362, 474
AluBI	AGCT	6 cut(s)	116, 233, 327, 346, 478, 530
AluI	AGCT	6 cut(s)	116, 233, 327, 346, 478, 530
Ama87I	CYCGRG	1 cut(s)	445
Aor51HI	AGCGCT	1 cut(s)	11
AoxI	GGCC	1 cut(s)	516
ApoI	RAATTY	1 cut(s)	53
AspLEI	GCGC	2 cut(s)	12, 317
AspS9I	GGNCC	1 cut(s)	517
AsuC2I	CCSGG	2 cut(s)	446, 447
AvaI	CYCGRG	1 cut(s)	445
BaeI	ACNNNNGTAYC	2 cut(s)	576, 609
BccI	CCATC	1 cut(s)	575
BcnI	CCSGG	2 cut(s)	446, 447
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	13
Bme1390I	CCNGG	2 cut(s)	446, 447
BmeT110I	CYCGRG	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	517
BmrFI	CCNGG	2 cut(s)	446, 447
BmsI	GCATC	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	446, 447
BsaJI	CCNNGG	1 cut(s)	445
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMII	CTCAG	1 cut(s)	243
BseNI	ACTGG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	518
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmFI	GGGAC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	571
BsnI	GGCC	1 cut(s)	518
BsoBI	CYCGRG	1 cut(s)	445
BspANI	GGCC	1 cut(s)	518
BspCNI	CTCAG	1 cut(s)	242
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	1 cut(s)	445
Bst4CI	ACNGT	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	107, 503
BstC8I	GCNNGC	2 cut(s)	329, 333
BstDEI	CTNAG	1 cut(s)	229
BstF5I	GGATG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	13
BstHHI	GCGC	2 cut(s)	12, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 595
BstSCI	CCNGG	2 cut(s)	444, 445
BstSFI	CTRYAG	1 cut(s)	66
BstXI	CCANNNNNNTGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	518
BtsCI	GGATG	1 cut(s)	91
BtsI	GCAGTG	1 cut(s)	315
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	2 cut(s)	329, 333
CfoI	GCGC	2 cut(s)	12, 317
Cfr13I	GGNCC	1 cut(s)	517
Cfr9I	CCCGGG	1 cut(s)	445
Csp6I	GTAC	2 cut(s)	399, 585
CviAII	CATG	3 cut(s)	119, 203, 605
CviJI	RGCY	8 cut(s)	116, 233, 327, 346, 440, 478, 518, 530
CviKI_1	RGCY	8 cut(s)	116, 233, 327, 346, 440, 478, 518, 530
CviQI	GTAC	2 cut(s)	399, 585
DdeI	CTNAG	1 cut(s)	229
Eam1104I	CTCTTC	2 cut(s)	107, 503
EarI	CTCTTC	2 cut(s)	107, 503
Eco47III	AGCGCT	1 cut(s)	11
Eco88I	CYCGRG	1 cut(s)	445
FaeI	CATG	3 cut(s)	122, 206, 608
FalI	AAGNNNNNCTT	4 cut(s)	254, 286, 482, 514
FaqI	GGGAC	1 cut(s)	311
FatI	CATG	3 cut(s)	118, 202, 604
FauNDI	CATATG	1 cut(s)	434
FblI	GTMKAC	1 cut(s)	246
FokI	GGATG	1 cut(s)	98
GlaI	GCGC	2 cut(s)	11, 316
HaeII	RGCGCY	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	518
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	2 cut(s)	12, 317
Hin1II	CATG	3 cut(s)	122, 206, 608
Hin6I	GCGC	2 cut(s)	10, 315
HinP1I	GCGC	2 cut(s)	10, 315
HinfI	GANTC	1 cut(s)	23
HpaII	CCGG	1 cut(s)	446
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	225
Hpy188III	TCNNGA	3 cut(s)	20, 485, 578
Hpy8I	GTNNAC	1 cut(s)	247
HpyAV	CCTTC	3 cut(s)	250, 363, 548
HpyCH4III	ACNGT	1 cut(s)	191
HpyCH4V	TGCA	4 cut(s)	335, 383, 524, 598
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 595
HpyF3I	CTNAG	1 cut(s)	229
Hsp92II	CATG	3 cut(s)	122, 206, 608
HspAI	GCGC	2 cut(s)	10, 315
LpnPI	CCDG	7 cut(s)	139, 157, 207, 459, 498, 515, 595
LweI	GCATC	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	4 cut(s)	94, 229, 425, 490
MfeI	CAATTG	1 cut(s)	543
MluCI	AATT	2 cut(s)	53, 543
MmeI	TCCRAC	2 cut(s)	531, 594
MnlI	CCTC	2 cut(s)	139, 440
MseI	TTAA	4 cut(s)	80, 288, 348, 560
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	446, 447
MunI	CAATTG	1 cut(s)	543
Mva1269I	GAATGC	1 cut(s)	571
MwoI	GCNNNNNNNGC	2 cut(s)	314, 595
NciI	CCSGG	2 cut(s)	446, 447
NdeI	CATATG	1 cut(s)	434
NlaIII	CATG	3 cut(s)	122, 206, 608
PctI	GAATGC	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	517
RsaI	GTAC	2 cut(s)	400, 586
RsaNI	GTAC	2 cut(s)	399, 585
SaqAI	TTAA	4 cut(s)	80, 288, 348, 560
Sau96I	GGNCC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	446, 447
SfaNI	GCATC	1 cut(s)	344
SfcI	CTRYAG	1 cut(s)	66
SmaI	CCCGGG	1 cut(s)	447
Sse9I	AATT	2 cut(s)	53, 543
SspI	AATATT	1 cut(s)	166
StyD4I	CCNGG	2 cut(s)	444, 445
TaaI	ACNGT	1 cut(s)	191
TaqI	TCGA	1 cut(s)	577
TasI	AATT	2 cut(s)	53, 543
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	4 cut(s)	80, 288, 348, 560
Tru9I	TTAA	4 cut(s)	80, 288, 348, 560
TscAI	CASTG	1 cut(s)	315
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	389
TspMI	CCCGGG	1 cut(s)	445
TspRI	CASTG	1 cut(s)	315
XapI	RAATTY	1 cut(s)	53
XmaI	CCCGGG	1 cut(s)	445
XmiI	GTMKAC	1 cut(s)	246

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.