Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0022668

Physical Location & Seq

Genomic Coordinates Forward (+)

14237520 .. 14245367

Gene Structure 7848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG154300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGCGAATGGGGGAAGACCCTGCCGTAGATGTCTGGATGGCAGATGTTTGCTGGTTGTATAATATTCGCAGGACTGATGTTGATTACAGTCCAGTTGTTCATGCCTTTGCCATAGTTACTCTGAACTCAGCTTTCTTCTATGTAGACAAAAGGAAGGTAAAGTCATACTTGGAAACGAACGGGATTAAAGTTTGGGACTATAAAGCAGTGAGCGCAGATGTCAGCTTGCTTGCATCTAATCAGCTTAAACCTTCTATTCAAGGCAAGGGAACGGAAACTGCATTAGCAAGAAATGGTACAATCAAAGCAGAAGAAAGTAATAATGACCTCATATGGGCTGACCCGGGTTATTGCTATTATGCTTTGTATTCAAAGCTAAATCCTGACAAGGTTCTCTTCCAGCAGTCATCTTTGGCCCTTGCAAAAGCTCTAAAGAACCCAATTGAGTTGGAAGGGTTAAAGAATGCTCACATTCGAGATGGTACGCTTGTTGTGCAATATCATGTCTGGTTGGATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006508 GO:0006807 GO:0006810 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008270 GO:0009914 GO:0009926 GO:0010013 GO:0010817 GO:0016020 GO:0016787 GO:0019538 GO:0030145 GO:0031406 GO:0033218 GO:0033293 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051179 GO:0051234 GO:0060918 GO:0065007 GO:0065008 GO:0070011 GO:0071704 GO:0071944 GO:0097159 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Creatinase_N Creatinase_N_2 Peptidase_M24 Peptidase_M24_C

Protein Analysis

173

Amino Acids

19.54

Weight (kDa)

6.82

Isoelectric Point (pI)

27.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Creatinase_N_2	PF16189	13 - 149	1.2e-23	Creatinase/Prolidase N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022668)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0102301
rosa_samantha	Rh2AG154300 Rh2BG160400 Rh2DG159900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	298, 484
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	260, 372
AluBI	AGCT	5 cut(s)	131, 225, 244, 376, 428
AluI	AGCT	5 cut(s)	131, 225, 244, 376, 428
Ama87I	CYCGRG	1 cut(s)	343
AoxI	GGCC	1 cut(s)	414
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	415
AsuC2I	CCSGG	2 cut(s)	344, 345
AvaI	CYCGRG	1 cut(s)	343
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BbsI	GAAGAC	1 cut(s)	21
BccI	CCATC	2 cut(s)	31, 473
BceAI	ACGGC	1 cut(s)	8
BcnI	CCSGG	2 cut(s)	344, 345
Bme1390I	CCNGG	2 cut(s)	344, 345
BmeT110I	CYCGRG	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	415
BmrFI	CCNGG	2 cut(s)	344, 345
BmsI	GCATC	1 cut(s)	242
BpiI	GAAGAC	1 cut(s)	21
BpuMI	CCSGG	2 cut(s)	344, 345
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	92
BshFI	GGCC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	416
BsoBI	CYCGRG	1 cut(s)	343
BspANI	GGCC	1 cut(s)	416
BspCNI	CTCAG	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	343
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	227, 231
BstDEI	CTNAG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	215
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 493
BstSCI	CCNGG	2 cut(s)	342, 343
BstV2I	GAAGAC	1 cut(s)	21
BsuRI	GGCC	1 cut(s)	416
BtsCI	GGATG	1 cut(s)	42
BtsI	GCAGTG	1 cut(s)	213
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	227, 231
CfoI	GCGC	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	415
Cfr9I	CCCGGG	1 cut(s)	343
Csp6I	GTAC	2 cut(s)	297, 483
CviAII	CATG	2 cut(s)	101, 503
CviJI	RGCY	7 cut(s)	131, 225, 244, 338, 376, 416, 428
CviKI_1	RGCY	7 cut(s)	131, 225, 244, 338, 376, 416, 428
CviQI	GTAC	2 cut(s)	297, 483
DdeI	CTNAG	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Eco88I	CYCGRG	1 cut(s)	343
FaeI	CATG	2 cut(s)	104, 506
FalI	AAGNNNNNCTT	4 cut(s)	152, 184, 380, 412
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	2 cut(s)	100, 502
FauNDI	CATATG	1 cut(s)	332
FblI	GTMKAC	1 cut(s)	144
FokI	GGATG	1 cut(s)	49
GlaI	GCGC	1 cut(s)	214
HaeIII	GGCC	1 cut(s)	416
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	104, 506
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HpaII	CCGG	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	123
Hpy188III	TCNNGA	3 cut(s)	34, 383, 476
Hpy8I	GTNNAC	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	148, 261, 446
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4V	TGCA	4 cut(s)	233, 281, 422, 496
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 493
HpyF3I	CTNAG	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	104, 506
HspAI	GCGC	1 cut(s)	213
LpnPI	CCDG	9 cut(s)	19, 33, 37, 55, 105, 357, 396, 413, 493
LweI	GCATC	1 cut(s)	242
MaeIII	GTNAC	1 cut(s)	115
MboII	GAAGA	4 cut(s)	26, 127, 323, 388
MfeI	CAATTG	1 cut(s)	441
MluCI	AATT	1 cut(s)	441
MmeI	TCCRAC	2 cut(s)	429, 492
MnlI	CCTC	1 cut(s)	338
MseI	TTAA	3 cut(s)	186, 246, 458
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	2 cut(s)	344, 345
MunI	CAATTG	1 cut(s)	441
Mva1269I	GAATGC	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	212, 493
NciI	CCSGG	2 cut(s)	344, 345
NdeI	CATATG	1 cut(s)	332
NlaIII	CATG	2 cut(s)	104, 506
PctI	GAATGC	1 cut(s)	469
PspPI	GGNCC	1 cut(s)	415
RsaI	GTAC	2 cut(s)	298, 484
RsaNI	GTAC	2 cut(s)	297, 483
SaqAI	TTAA	3 cut(s)	186, 246, 458
Sau96I	GGNCC	1 cut(s)	415
ScrFI	CCNGG	2 cut(s)	344, 345
SetI	ASST	9 cut(s)	133, 159, 227, 246, 253, 330, 378, 393, 430
SfaNI	GCATC	1 cut(s)	242
SmaI	CCCGGG	1 cut(s)	345
Sse9I	AATT	1 cut(s)	441
SspI	AATATT	1 cut(s)	64
StyD4I	CCNGG	2 cut(s)	342, 343
TaaI	ACNGT	1 cut(s)	89
TaqI	TCGA	1 cut(s)	475
TasI	AATT	1 cut(s)	441
Tru1I	TTAA	3 cut(s)	186, 246, 458
Tru9I	TTAA	3 cut(s)	186, 246, 458
TscAI	CASTG	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	89
TspGWI	ACGGA	1 cut(s)	287
TspMI	CCCGGG	1 cut(s)	343
TspRI	CASTG	1 cut(s)	213
XmaI	CCCGGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.