Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0021354

Physical Location & Seq

Genomic Coordinates Reverse (-)

21804431 .. 21806176

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTTGATTGTGTTCCTTAGTTTGGATCTTGTACAAGCAAGGCTCAATCCTGAGGAGGCATATTCTGACACTTATGCTCATTGCAAAATTCACCCGTCACTTATATTGGGTGTTTGTGCTTCAATTATACCATTTCCTGATCATAATCAGGAAGATTTTGTCATTATGAATCAATCCTCTATAGATTGTGGATTTTTTTGGTCACTATTCTTCCACTCCTATAGGTTAGCTTGTTTCCAACACCTATTGCAAGGACATGTTGTTCATATTATTCTATTGTGTTGCATAAAAAAGATGGGGACCCATGTCAAAGAAGATTTCGGACATCTAGACAGAGTAAATACGATGGGTATGTGGCATGGTTCTTATGATAAATTGGATAATGATTTGCACATCCTGTTATATTACAAGACTACTGGGAGAAGCGGAGGATTTGGGTTTGCGACTATGTCTAGTGATCAGGAAGTAGAAGCAGCTGCTCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

161

Amino Acids

18.31

Weight (kDa)

5.94

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021354)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110311
rosa_samantha	Rh1AG296200 Rh2AG497900 Rh2CG484000 Rh6AG081300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	426
AclWI	GGATC	1 cut(s)	33
AcsI	RAATTY	1 cut(s)	87
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	1 cut(s)	22
AflIII	ACRYGT	1 cut(s)	256
AgsI	TTSAA	1 cut(s)	123
AloI	GAACNNNNNNTCC	2 cut(s)	246, 278
AluBI	AGCT	2 cut(s)	230, 476
AluI	AGCT	2 cut(s)	230, 476
AlwI	GGATC	1 cut(s)	33
ApeKI	GCWGC	2 cut(s)	473, 476
ApoI	RAATTY	1 cut(s)	87
AspS9I	GGNCC	1 cut(s)	300
AsuHPI	GGTGA	1 cut(s)	83
AvaII	GGWCC	1 cut(s)	300
AxyI	CCTNAGG	1 cut(s)	51
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	289, 340
BclI	TGATCA	2 cut(s)	139, 457
BfaI	CTAG	2 cut(s)	329, 453
BfmI	CTRYAG	2 cut(s)	180, 220
BisI	GCNGC	2 cut(s)	474, 477
BlsI	GCNGC	2 cut(s)	475, 478
Bme18I	GGWCC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	300
BmiI	GGNNCC	2 cut(s)	301, 302
BmrI	ACTGGG	1 cut(s)	426
BmuI	ACTGGG	1 cut(s)	426
BoxI	GACNNNNGTC	1 cut(s)	305
BsaBI	GATNNNNATC	1 cut(s)	144
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	1 cut(s)	421
Bse21I	CCTNAGG	1 cut(s)	51
Bse3DI	GCAATG	1 cut(s)	79
Bse8I	GATNNNNATC	1 cut(s)	144
BseGI	GGATG	1 cut(s)	393
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseMI	GCAATG	1 cut(s)	79
BseMII	CTCAG	1 cut(s)	42
BseNI	ACTGG	1 cut(s)	421
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	1 cut(s)	463
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	313
Bsp1407I	TGTACA	1 cut(s)	31
Bsp143I	GATC	3 cut(s)	25, 139, 457
BspACI	CCGC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	301, 302
BspPI	GGATC	1 cut(s)	33
BsrDI	GCAATG	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	31
BsrI	ACTGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	25, 139, 457
BstAUI	TGTACA	1 cut(s)	31
BstDEI	CTNAG	2 cut(s)	17, 51
BstF5I	GGATG	1 cut(s)	393
BstKTI	GATC	3 cut(s)	28, 142, 460
BstMBI	GATC	3 cut(s)	25, 139, 457
BstNSI	RCATGY	1 cut(s)	260
BstPAI	GACNNNNGTC	1 cut(s)	305
BstSFI	CTRYAG	2 cut(s)	180, 220
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
Bsu36I	CCTNAGG	1 cut(s)	51
BtsCI	GGATG	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	3 cut(s)	257, 305, 359
CviJI	RGCY	3 cut(s)	43, 230, 476
CviKI_1	RGCY	3 cut(s)	43, 230, 476
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	17, 51
DpnI	GATC	3 cut(s)	27, 141, 459
DpnII	GATC	3 cut(s)	25, 139, 457
Eco47I	GGWCC	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	51
EcoO109I	RGGNCCY	1 cut(s)	300
FaeI	CATG	3 cut(s)	260, 308, 362
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	3 cut(s)	256, 304, 358
FbaI	TGATCA	2 cut(s)	139, 457
Fnu4HI	GCNGC	2 cut(s)	474, 477
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	2 cut(s)	474, 477
FspBI	CTAG	2 cut(s)	329, 453
GluI	GCNGC	2 cut(s)	474, 477
Hin1II	CATG	3 cut(s)	260, 308, 362
HinfI	GANTC	1 cut(s)	169
HphI	GGTGA	1 cut(s)	83
Hpy188I	TCNGA	2 cut(s)	67, 323
Hpy188III	TCNNGA	5 cut(s)	50, 137, 149, 329, 461
HpyCH4V	TGCA	4 cut(s)	84, 250, 285, 391
HpyF3I	CTNAG	2 cut(s)	17, 51
Hsp92II	CATG	3 cut(s)	260, 308, 362
KflI	GGGWCCC	1 cut(s)	300
Ksp22I	TGATCA	2 cut(s)	139, 457
Kzo9I	GATC	3 cut(s)	25, 139, 457
LpnPI	CCDG	6 cut(s)	63, 134, 150, 402, 410, 446
Lsp1109I	GCAGC	1 cut(s)	463
MaeI	CTAG	2 cut(s)	329, 453
MaeIII	GTNAC	2 cut(s)	96, 201
MalI	GATC	3 cut(s)	27, 141, 459
MboI	GATC	3 cut(s)	25, 139, 457
MboII	GAAGA	3 cut(s)	164, 202, 326
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	3 cut(s)	87, 123, 374
MmeI	TCCRAC	1 cut(s)	262
MnlI	CCTC	4 cut(s)	46, 49, 187, 422
MspA1I	CMGCKG	1 cut(s)	476
NdeII	GATC	3 cut(s)	25, 139, 457
NlaIII	CATG	3 cut(s)	260, 308, 362
NlaIV	GGNNCC	2 cut(s)	301, 302
NmuCI	GTSAC	2 cut(s)	96, 201
NspI	RCATGY	1 cut(s)	260
PciI	ACATGT	1 cut(s)	256
PfeI	GAWTC	1 cut(s)	169
PflFI	GACNNNGTC	1 cut(s)	448
PkrI	GCNGC	2 cut(s)	475, 478
PpuMI	RGGWCCY	1 cut(s)	300
PscI	ACATGT	1 cut(s)	256
PshAI	GACNNNNGTC	1 cut(s)	305
Psp5II	RGGWCCY	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	301, 302
PspPI	GGNCC	1 cut(s)	300
PspPPI	RGGWCCY	1 cut(s)	300
PsuI	RGATCY	1 cut(s)	25
PsyI	GACNNNGTC	1 cut(s)	448
PvuII	CAGCTG	1 cut(s)	476
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
SatI	GCNGC	2 cut(s)	474, 477
Sau3AI	GATC	3 cut(s)	25, 139, 457
Sau96I	GGNCC	1 cut(s)	300
SetI	ASST	4 cut(s)	227, 232, 246, 478
SfcI	CTRYAG	2 cut(s)	180, 220
SinI	GGWCC	1 cut(s)	300
Sse9I	AATT	3 cut(s)	87, 123, 374
SsiI	CCGC	1 cut(s)	426
SspMI	CTAG	2 cut(s)	329, 453
TaqI	TCGA	1 cut(s)	481
TasI	AATT	3 cut(s)	87, 123, 374
TatI	WGTACW	1 cut(s)	31
TfiI	GAWTC	1 cut(s)	169
TseFI	GTSAC	2 cut(s)	96, 201
TseI	GCWGC	2 cut(s)	473, 476
Tsp45I	GTSAC	2 cut(s)	96, 201
TspDTI	ATGAA	2 cut(s)	182, 254
Tth111I	GACNNNGTC	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	300
XapI	RAATTY	1 cut(s)	87
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	1 cut(s)	260
XspI	CTAG	2 cut(s)	329, 453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.