DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr2g0110311 |
| rosa_samantha | Rh1AG296200 Rh2AG497900 Rh2CG484000 Rh6AG081300 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 226 |
| AciI | CCGC | 2 cut(s) | 64, 325 |
| AcuI | CTGAAG | 1 cut(s) | 84 |
| AcyI | GRCGYC | 1 cut(s) | 223 |
| AfaI | GTAC | 1 cut(s) | 49 |
| AflIII | ACRYGT | 1 cut(s) | 154 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 144, 176 |
| AluBI | AGCT | 1 cut(s) | 128 |
| AluI | AGCT | 1 cut(s) | 128 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 144, 176 |
| AspS9I | GGNCC | 1 cut(s) | 198 |
| AvaII | GGWCC | 1 cut(s) | 198 |
| BccI | CCATC | 3 cut(s) | 91, 187, 238 |
| BciVI | GTATCC | 1 cut(s) | 21 |
| BfaI | CTAG | 3 cut(s) | 116, 227, 352 |
| BfuI | GTATCC | 1 cut(s) | 21 |
| BisI | GCNGC | 1 cut(s) | 64 |
| BlsI | GCNGC | 1 cut(s) | 65 |
| Bme18I | GGWCC | 1 cut(s) | 198 |
| BmgT120I | GGNCC | 1 cut(s) | 198 |
| BmiI | GGNNCC | 2 cut(s) | 199, 200 |
| BmrI | ACTGGG | 1 cut(s) | 325 |
| BmsI | GCATC | 1 cut(s) | 99 |
| BmuI | ACTGGG | 1 cut(s) | 325 |
| BoxI | GACNNNNGTC | 1 cut(s) | 203 |
| BsaHI | GRCGYC | 1 cut(s) | 223 |
| Bse1I | ACTGG | 3 cut(s) | 15, 38, 320 |
| BseGI | GGATG | 1 cut(s) | 292 |
| BseMII | CTCAG | 1 cut(s) | 70 |
| BseNI | ACTGG | 3 cut(s) | 15, 38, 320 |
| BslFI | GGGAC | 1 cut(s) | 211 |
| BsmFI | GGGAC | 1 cut(s) | 211 |
| Bsp143I | GATC | 1 cut(s) | 283 |
| BspACI | CCGC | 2 cut(s) | 64, 325 |
| BspCNI | CTCAG | 1 cut(s) | 69 |
| BspLI | GGNNCC | 2 cut(s) | 199, 200 |
| BsrI | ACTGG | 3 cut(s) | 15, 38, 320 |
| BssMI | GATC | 1 cut(s) | 283 |
| BssNI | GRCGYC | 1 cut(s) | 223 |
| Bst4CI | ACNGT | 1 cut(s) | 177 |
| BstACI | GRCGYC | 1 cut(s) | 223 |
| BstDEI | CTNAG | 1 cut(s) | 56 |
| BstF5I | GGATG | 1 cut(s) | 292 |
| BstKTI | GATC | 1 cut(s) | 286 |
| BstMBI | GATC | 1 cut(s) | 283 |
| BstNSI | RCATGY | 1 cut(s) | 158 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 203 |
| BsuI | GTATCC | 1 cut(s) | 21 |
| BtsCI | GGATG | 1 cut(s) | 292 |
| BtsIMutI | CAGTG | 1 cut(s) | 31 |
| Cfr13I | GGNCC | 1 cut(s) | 198 |
| Csp6I | GTAC | 1 cut(s) | 48 |
| CviAII | CATG | 4 cut(s) | 77, 155, 203, 257 |
| CviJI | RGCY | 4 cut(s) | 37, 63, 82, 128 |
| CviKI_1 | RGCY | 4 cut(s) | 37, 63, 82, 128 |
| CviQI | GTAC | 1 cut(s) | 48 |
| DdeI | CTNAG | 1 cut(s) | 56 |
| DpnI | GATC | 1 cut(s) | 285 |
| DpnII | GATC | 1 cut(s) | 283 |
| Eco47I | GGWCC | 1 cut(s) | 198 |
| Eco57I | CTGAAG | 1 cut(s) | 84 |
| EcoO109I | RGGNCCY | 1 cut(s) | 198 |
| FaeI | CATG | 4 cut(s) | 80, 158, 206, 260 |
| FaqI | GGGAC | 1 cut(s) | 211 |
| FatI | CATG | 4 cut(s) | 76, 154, 202, 256 |
| Fnu4HI | GCNGC | 1 cut(s) | 64 |
| FokI | GGATG | 1 cut(s) | 279 |
| Fsp4HI | GCNGC | 1 cut(s) | 64 |
| FspBI | CTAG | 3 cut(s) | 116, 227, 352 |
| GluI | GCNGC | 1 cut(s) | 64 |
| Hin1I | GRCGYC | 1 cut(s) | 223 |
| Hin1II | CATG | 4 cut(s) | 80, 158, 206, 260 |
| Hpy188I | TCNGA | 2 cut(s) | 22, 59 |
| Hpy188III | TCNNGA | 1 cut(s) | 227 |
| HpyCH4III | ACNGT | 1 cut(s) | 177 |
| HpyCH4IV | ACGT | 1 cut(s) | 223 |
| HpyCH4V | TGCA | 3 cut(s) | 148, 183, 290 |
| HpyF3I | CTNAG | 1 cut(s) | 56 |
| HpySE526I | ACGT | 1 cut(s) | 223 |
| Hsp92I | GRCGYC | 1 cut(s) | 223 |
| Hsp92II | CATG | 4 cut(s) | 80, 158, 206, 260 |
| KflI | GGGWCCC | 1 cut(s) | 198 |
| Kzo9I | GATC | 1 cut(s) | 283 |
| LpnPI | CCDG | 6 cut(s) | 19, 28, 87, 125, 301, 309 |
| LweI | GCATC | 1 cut(s) | 99 |
| MaeI | CTAG | 3 cut(s) | 116, 227, 352 |
| MaeII | ACGT | 1 cut(s) | 223 |
| MaeIII | GTNAC | 2 cut(s) | 3, 69 |
| MalI | GATC | 1 cut(s) | 285 |
| MboI | GATC | 1 cut(s) | 283 |
| MboII | GAAGA | 2 cut(s) | 85, 224 |
| MluCI | AATT | 2 cut(s) | 119, 272 |
| MmeI | TCCRAC | 1 cut(s) | 160 |
| MnlI | CCTC | 2 cut(s) | 65, 321 |
| NdeII | GATC | 1 cut(s) | 283 |
| NlaIII | CATG | 4 cut(s) | 80, 158, 206, 260 |
| NlaIV | GGNNCC | 2 cut(s) | 199, 200 |
| NmuCI | GTSAC | 2 cut(s) | 3, 69 |
| NspI | RCATGY | 1 cut(s) | 158 |
| PciI | ACATGT | 1 cut(s) | 154 |
| PflFI | GACNNNGTC | 1 cut(s) | 347 |
| PkrI | GCNGC | 1 cut(s) | 65 |
| PpuMI | RGGWCCY | 1 cut(s) | 198 |
| PscI | ACATGT | 1 cut(s) | 154 |
| PshAI | GACNNNNGTC | 1 cut(s) | 203 |
| Psp5II | RGGWCCY | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 2 cut(s) | 199, 200 |
| PspPI | GGNCC | 1 cut(s) | 198 |
| PspPPI | RGGWCCY | 1 cut(s) | 198 |
| PsyI | GACNNNGTC | 1 cut(s) | 347 |
| RsaI | GTAC | 1 cut(s) | 49 |
| RsaNI | GTAC | 1 cut(s) | 48 |
| SatI | GCNGC | 1 cut(s) | 64 |
| Sau3AI | GATC | 1 cut(s) | 283 |
| Sau96I | GGNCC | 1 cut(s) | 198 |
| SetI | ASST | 3 cut(s) | 130, 144, 226 |
| SfaNI | GCATC | 1 cut(s) | 99 |
| SinI | GGWCC | 1 cut(s) | 198 |
| Sse9I | AATT | 2 cut(s) | 119, 272 |
| SsiI | CCGC | 2 cut(s) | 64, 325 |
| SspMI | CTAG | 3 cut(s) | 116, 227, 352 |
| TaaI | ACNGT | 1 cut(s) | 177 |
| TaiI | ACGT | 1 cut(s) | 226 |
| TaqI | TCGA | 1 cut(s) | 86 |
| TasI | AATT | 2 cut(s) | 119, 272 |
| TatI | WGTACW | 1 cut(s) | 47 |
| TauI | GCSGC | 1 cut(s) | 66 |
| TscAI | CASTG | 1 cut(s) | 38 |
| TseFI | GTSAC | 2 cut(s) | 3, 69 |
| Tsp45I | GTSAC | 2 cut(s) | 3, 69 |
| TspRI | CASTG | 1 cut(s) | 38 |
| Tth111I | GACNNNGTC | 1 cut(s) | 347 |
| VpaK11BI | GGWCC | 1 cut(s) | 198 |
| XbaI | TCTAGA | 1 cut(s) | 226 |
| XceI | RCATGY | 1 cut(s) | 158 |
| XspI | CTAG | 3 cut(s) | 116, 227, 352 |
| ZraI | GACGTC | 1 cut(s) | 224 |