Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0021354

Physical Location & Seq

Genomic Coordinates Reverse (-)

72015716 .. 72018605

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG497900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCACTAACTACCAGTTCTGAATGGATACACTGGCTTATGTTCTGTACTACCCTCAGAAGCCGCTTGTCACTACATGAGCCATCGAGCATCTTCACTTCAGGAAACTTCTTGCTAGAATTGTTAGCTTGTTTCCAACACCTATTGCAAGGACATGTTGTTCGTATTATTCTACTGTGTTGCATAAAAAAGATGGGGACCCATGTCAAAGAAGATTTTGGACGTCTAGACAGAGCAAATACGATGGGTATGTGGCATGGTTCTTATGATAAATTGGATAATGATTTGCACATCCTGTTATATTACAAGACTACTGGGAGAAGCGGAGGATTTGGGTTTGCGACTATGTCTAGTGATCAGGAAGAGCCTTTCAACAATTGCATCATCAACAGATTCATGGAGGATGCAGTGGAATTGGCATATTTGCGATTCATATGGCTAAGTACCAGGGAGCAACTGTATCTGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0003899 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005665 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019222 GO:0019438 GO:0030054 GO:0030880 GO:0031047 GO:0031050 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034062 GO:0034641 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0048519 GO:0050789 GO:0050896 GO:0051716 GO:0055029 GO:0055044 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097747 GO:0140098 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko05016 ko05169 map00230 map00240 map01100 map03020 map05016 map05169

Pfam Domains

Protein Families

RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_4 RNA_pol_Rpb2_5 RNA_pol_Rpb2_6 RNA_pol_Rpb2_7

Protein Analysis

156

Amino Acids

18.17

Weight (kDa)

6.36

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021354)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0110311
rosa_samantha	Rh1AG296200 Rh2AG497900 Rh2CG484000 Rh6AG081300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	226
AciI	CCGC	2 cut(s)	64, 324
AcuI	CTGAAG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	223
AfaI	GTAC	2 cut(s)	49, 445
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	446
AloI	GAACNNNNNNTCC	2 cut(s)	144, 176
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
AspS9I	GGNCC	1 cut(s)	198
AvaII	GGWCC	1 cut(s)	198
BccI	CCATC	3 cut(s)	91, 187, 238
BciT130I	CCWGG	1 cut(s)	448
BciVI	GTATCC	1 cut(s)	21
BclI	TGATCA	1 cut(s)	355
BfaI	CTAG	3 cut(s)	116, 227, 351
BfuI	GTATCC	1 cut(s)	21
BisI	GCNGC	1 cut(s)	64
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	1 cut(s)	448
Bme18I	GGWCC	1 cut(s)	198
BmgT120I	GGNCC	1 cut(s)	198
BmiI	GGNNCC	2 cut(s)	199, 200
BmrFI	CCNGG	1 cut(s)	448
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	3 cut(s)	99, 390, 394
BmuI	ACTGGG	1 cut(s)	324
BoxI	GACNNNNGTC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	447
BsaXI	ACNNNNNCTCC	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	15, 38, 319
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	1 cut(s)	447
BseGI	GGATG	2 cut(s)	291, 409
BseMII	CTCAG	1 cut(s)	70
BseNI	ACTGG	3 cut(s)	15, 38, 319
BslFI	GGGAC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	211
Bsp143I	GATC	1 cut(s)	355
BspACI	CCGC	2 cut(s)	64, 324
BspCNI	CTCAG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	199, 200
BspQI	GCTCTTC	1 cut(s)	357
BsrI	ACTGG	3 cut(s)	15, 38, 319
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	1 cut(s)	355
BssNI	GRCGYC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	177, 459
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	223
BstDEI	CTNAG	2 cut(s)	56, 440
BstF5I	GGATG	2 cut(s)	291, 409
BstKTI	GATC	1 cut(s)	358
BstMBI	GATC	1 cut(s)	355
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	158
BstPAI	GACNNNNGTC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	446
BsuI	GTATCC	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	291, 409
BtsI	GCAGTG	1 cut(s)	414
BtsIMutI	CAGTG	2 cut(s)	31, 414
Cfr13I	GGNCC	1 cut(s)	198
Csp6I	GTAC	2 cut(s)	48, 444
CviAII	CATG	5 cut(s)	77, 155, 203, 257, 397
CviJI	RGCY	6 cut(s)	37, 63, 82, 128, 367, 439
CviKI_1	RGCY	6 cut(s)	37, 63, 82, 128, 367, 439
CviQI	GTAC	2 cut(s)	48, 444
DdeI	CTNAG	2 cut(s)	56, 440
DpnI	GATC	1 cut(s)	357
DpnII	GATC	1 cut(s)	355
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	198
Eco57I	CTGAAG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	198
EcoRII	CCWGG	1 cut(s)	446
FaeI	CATG	5 cut(s)	80, 158, 206, 260, 400
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	5 cut(s)	76, 154, 202, 256, 396
FauNDI	CATATG	1 cut(s)	434
FbaI	TGATCA	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	2 cut(s)	278, 416
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	3 cut(s)	116, 227, 351
GluI	GCNGC	1 cut(s)	64
Hin1I	GRCGYC	1 cut(s)	223
Hin1II	CATG	5 cut(s)	80, 158, 206, 260, 400
HinfI	GANTC	2 cut(s)	393, 429
Hpy188I	TCNGA	2 cut(s)	22, 59
Hpy188III	TCNNGA	3 cut(s)	102, 227, 359
HpyCH4III	ACNGT	2 cut(s)	177, 459
HpyCH4IV	ACGT	1 cut(s)	223
HpyCH4V	TGCA	6 cut(s)	148, 183, 289, 381, 407, 466
HpyF3I	CTNAG	2 cut(s)	56, 440
HpySE526I	ACGT	1 cut(s)	223
Hsp92I	GRCGYC	1 cut(s)	223
Hsp92II	CATG	5 cut(s)	80, 158, 206, 260, 400
KflI	GGGWCCC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	355
Kzo9I	GATC	1 cut(s)	355
LguI	GCTCTTC	1 cut(s)	357
LmnI	GCTCC	1 cut(s)	451
LpnPI	CCDG	8 cut(s)	19, 28, 87, 300, 308, 344, 433, 460
LweI	GCATC	3 cut(s)	99, 390, 394
MaeI	CTAG	3 cut(s)	116, 227, 351
MaeII	ACGT	1 cut(s)	223
MaeIII	GTNAC	2 cut(s)	3, 69
MalI	GATC	1 cut(s)	357
MboI	GATC	1 cut(s)	355
MboII	GAAGA	3 cut(s)	85, 224, 374
MfeI	CAATTG	1 cut(s)	376
MluCI	AATT	4 cut(s)	119, 272, 376, 413
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	65, 320, 394
MspR9I	CCNGG	1 cut(s)	448
MunI	CAATTG	1 cut(s)	376
MvaI	CCWGG	1 cut(s)	448
NdeI	CATATG	1 cut(s)	434
NdeII	GATC	1 cut(s)	355
NlaIII	CATG	5 cut(s)	80, 158, 206, 260, 400
NlaIV	GGNNCC	2 cut(s)	199, 200
NmuCI	GTSAC	2 cut(s)	3, 69
NspI	RCATGY	1 cut(s)	158
PciI	ACATGT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	357
PfeI	GAWTC	2 cut(s)	393, 429
PflFI	GACNNNGTC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	65
PpuMI	RGGWCCY	1 cut(s)	198
PscI	ACATGT	1 cut(s)	154
PshAI	GACNNNNGTC	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	199, 200
PspPI	GGNCC	1 cut(s)	198
PspPPI	RGGWCCY	1 cut(s)	198
PsyI	GACNNNGTC	1 cut(s)	346
RsaI	GTAC	2 cut(s)	49, 445
RsaNI	GTAC	2 cut(s)	48, 444
SapI	GCTCTTC	1 cut(s)	357
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	1 cut(s)	355
Sau96I	GGNCC	1 cut(s)	198
ScrFI	CCNGG	1 cut(s)	448
SetI	ASST	3 cut(s)	130, 144, 226
SfaNI	GCATC	3 cut(s)	99, 390, 394
SinI	GGWCC	1 cut(s)	198
Sse9I	AATT	4 cut(s)	119, 272, 376, 413
SsiI	CCGC	2 cut(s)	64, 324
SspMI	CTAG	3 cut(s)	116, 227, 351
StyD4I	CCNGG	1 cut(s)	446
TaaI	ACNGT	2 cut(s)	177, 459
TaiI	ACGT	1 cut(s)	226
TaqI	TCGA	1 cut(s)	86
TasI	AATT	4 cut(s)	119, 272, 376, 413
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	393, 429
TscAI	CASTG	2 cut(s)	38, 414
TseFI	GTSAC	2 cut(s)	3, 69
Tsp45I	GTSAC	2 cut(s)	3, 69
TspDTI	ATGAA	2 cut(s)	385, 421
TspRI	CASTG	2 cut(s)	38, 414
Tth111I	GACNNNGTC	1 cut(s)	346
VpaK11BI	GGWCC	1 cut(s)	198
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	158
XspI	CTAG	3 cut(s)	116, 227, 351
ZraI	GACGTC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.