Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0022561

Physical Location & Seq

Genomic Coordinates Forward (+)

22627425 .. 22628580

Gene Structure 1156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGAGTTCTTTGGGAGGCATGCTAATCAGTCCTTCAAGTTTTCTGTTTCTCTTCTCCCTTGTAGTTCTGATCTTCAACATCTTTCGCAAAATATGGTGGATTCCTACTCGCGTACAGAAATTTATGGCTTCACAGGGAATCAAAGGTCCTCCTTATAGACTCATCCATGGAAACACCAAAGAAATCGCCAACATGTACAAGGAAGCCATGAACAAGCCGTTATATTTGTCACACGACATATTACCTGTAAATATGATTCCACACATGATAGCTGGTGCTGAGACAATGCTAAGAAGATGGAAAAACCATGAAGGCCAAGAGATTGAGATGTATCAAGAATTTAGATTGTTGACTTCAGAAGTGATTTCCAGGACAGCTTTTGGTAGCAGCTATTTGGAAGGAAAGCACATATTTGAAATGTTGATGAAGTTATGCTCCTTGCTTGTCAACTATGAACTCAAACTCAAGCTTCCAGGCATTAGGTTAACAGCTTTACATTCTAACACACTGTACAATAGCCTTGTTATGCGCGCAGCAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0006629 GO:0008150 GO:0008152 GO:0008202 GO:0008395 GO:0009719 GO:0009725 GO:0009741 GO:0010033 GO:0010268 GO:0010817 GO:0014070 GO:0016128 GO:0016131 GO:0016491 GO:0033993 GO:0042221 GO:0042445 GO:0042592 GO:0044238 GO:0048878 GO:0050896 GO:0055088 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:1901360 GO:1901615 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00905 map00905

Pfam Domains

Protein Families

p450

Protein Analysis

180

Amino Acids

20.73

Weight (kDa)

9.71

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022561)

Species	Orthologous Gene IDs
pyrus_communis	pycom13g05090
rosa_chinensis	RchiOBHm_Chr2g0110951 RchiOBHm_Chr4g0420591
rosa_multiflora	Rmu_sc0002137.1_g000018

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	111, 531
AcsI	RAATTY	2 cut(s)	119, 338
AcuI	CTGAAG	1 cut(s)	339
AfaI	GTAC	3 cut(s)	114, 197, 512
AflIII	ACRYGT	1 cut(s)	192
AgsI	TTSAA	3 cut(s)	36, 76, 416
AjnI	CCWGG	2 cut(s)	368, 472
AluBI	AGCT	6 cut(s)	272, 377, 390, 469, 491, 539
AluI	AGCT	6 cut(s)	272, 377, 390, 469, 491, 539
Alw26I	GTCTC	1 cut(s)	275
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	387, 533, 536
ApoI	RAATTY	2 cut(s)	119, 338
AspLEI	GCGC	2 cut(s)	531, 533
AspS9I	GGNCC	1 cut(s)	146
AvaII	GGWCC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	399
BccI	CCATC	1 cut(s)	291
BceAI	ACGGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	370, 474
BcoDI	GTCTC	1 cut(s)	275
BisI	GCNGC	3 cut(s)	388, 534, 537
BlsI	GCNGC	3 cut(s)	389, 535, 538
Bme1390I	CCNGG	2 cut(s)	370, 474
Bme18I	GGWCC	1 cut(s)	146
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	2 cut(s)	370, 474
BpuEI	CTTGAG	1 cut(s)	449
BsaJI	CCNNGG	1 cut(s)	166
BseBI	CCWGG	2 cut(s)	370, 474
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	162
BseMII	CTCAG	1 cut(s)	270
BsePI	GCGCGC	1 cut(s)	529
BseXI	GCAGC	1 cut(s)	399
Bsh1236I	CGCG	2 cut(s)	111, 531
BshFI	GGCC	1 cut(s)	315
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	315
Bsp1407I	TGTACA	2 cut(s)	195, 510
Bsp143I	GATC	1 cut(s)	69
Bsp19I	CCATGG	1 cut(s)	166
BspANI	GGCC	1 cut(s)	315
BspCNI	CTCAG	1 cut(s)	271
BspFNI	CGCG	2 cut(s)	111, 531
BsrGI	TGTACA	2 cut(s)	195, 510
BssECI	CCNNGG	1 cut(s)	166
BssHII	GCGCGC	1 cut(s)	529
BssMI	GATC	1 cut(s)	69
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	370, 474
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	56
BstAUI	TGTACA	2 cut(s)	195, 510
BstC8I	GCNNGC	2 cut(s)	20, 531
BstDEI	CTNAG	2 cut(s)	279, 290
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	111, 531
BstHHI	GCGC	2 cut(s)	531, 533
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	1 cut(s)	69
BstNI	CCWGG	2 cut(s)	370, 474
BstNSI	RCATGY	2 cut(s)	22, 196
BstSCI	CCNGG	2 cut(s)	368, 472
BstUI	CGCG	2 cut(s)	111, 531
BstV1I	GCAGC	1 cut(s)	399
BsuRI	GGCC	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	166
BtsCI	GGATG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	2 cut(s)	20, 531
CfoI	GCGC	2 cut(s)	531, 533
Cfr13I	GGNCC	1 cut(s)	146
Csp6I	GTAC	3 cut(s)	113, 196, 511
CviAII	CATG	6 cut(s)	19, 167, 193, 208, 265, 308
CviQI	GTAC	3 cut(s)	113, 196, 511
DdeI	CTNAG	2 cut(s)	279, 290
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	56
EarI	CTCTTC	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	339
EcoO109I	RGGNCCY	1 cut(s)	146
EcoRII	CCWGG	2 cut(s)	368, 472
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	6 cut(s)	22, 170, 196, 211, 268, 311
FatI	CATG	6 cut(s)	18, 166, 192, 207, 264, 307
Fnu4HI	GCNGC	3 cut(s)	388, 534, 537
FokI	GGATG	1 cut(s)	149
Fsp4HI	GCNGC	3 cut(s)	388, 534, 537
GlaI	GCGC	2 cut(s)	530, 532
GluI	GCNGC	3 cut(s)	388, 534, 537
HaeIII	GGCC	1 cut(s)	315
HhaI	GCGC	2 cut(s)	531, 533
Hin1II	CATG	6 cut(s)	22, 170, 196, 211, 268, 311
Hin6I	GCGC	2 cut(s)	529, 531
HinP1I	GCGC	2 cut(s)	529, 531
HincII	GTYRAC	3 cut(s)	351, 448, 486
HindII	GTYRAC	3 cut(s)	351, 448, 486
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	4 cut(s)	100, 138, 159, 256
HpaI	GTTAAC	1 cut(s)	486
Hpy166II	GTNNAC	3 cut(s)	351, 448, 486
Hpy188I	TCNGA	2 cut(s)	69, 358
Hpy188III	TCNNGA	1 cut(s)	335
Hpy8I	GTNNAC	3 cut(s)	351, 448, 486
HpyAV	CCTTC	3 cut(s)	42, 305, 392
HpyCH4III	ACNGT	1 cut(s)	510
HpyF3I	CTNAG	2 cut(s)	279, 290
Hsp92II	CATG	6 cut(s)	22, 170, 196, 211, 268, 311
HspAI	GCGC	2 cut(s)	529, 531
KspAI	GTTAAC	1 cut(s)	486
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	440
LpnPI	CCDG	7 cut(s)	119, 258, 258, 355, 382, 459, 486
Lsp1109I	GCAGC	1 cut(s)	399
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	43, 64, 306
MluCI	AATT	2 cut(s)	119, 338
MlyI	GAGTC	1 cut(s)	153
MnlI	CCTC	2 cut(s)	8, 159
MseI	TTAA	1 cut(s)	485
MspR9I	CCNGG	2 cut(s)	370, 474
MvaI	CCWGG	2 cut(s)	370, 474
MvnI	CGCG	2 cut(s)	111, 531
NcoI	CCATGG	1 cut(s)	166
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	6 cut(s)	22, 170, 196, 211, 268, 311
NmuCI	GTSAC	1 cut(s)	228
NspI	RCATGY	2 cut(s)	22, 196
PaeI	GCATGC	1 cut(s)	22
PauI	GCGCGC	1 cut(s)	529
PciI	ACATGT	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	100, 138, 256
PfoI	TCCNGGA	1 cut(s)	368
PkrI	GCNGC	3 cut(s)	389, 535, 538
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
PpuMI	RGGWCCY	1 cut(s)	146
PscI	ACATGT	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	2 cut(s)	368, 472
PspGI	CCWGG	2 cut(s)	368, 472
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
PteI	GCGCGC	1 cut(s)	529
RsaI	GTAC	3 cut(s)	114, 197, 512
RsaNI	GTAC	3 cut(s)	113, 196, 511
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	3 cut(s)	388, 534, 537
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	370, 474
SetI	ASST	9 cut(s)	148, 247, 274, 379, 392, 471, 485, 493, 541
SinI	GGWCC	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
SphI	GCATGC	1 cut(s)	22
Sse9I	AATT	2 cut(s)	119, 338
StyD4I	CCNGG	2 cut(s)	368, 472
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	510
TasI	AATT	2 cut(s)	119, 338
TatI	WGTACW	2 cut(s)	195, 510
TfiI	GAWTC	3 cut(s)	100, 138, 256
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	1 cut(s)	513
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	3 cut(s)	387, 533, 536
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	4 cut(s)	224, 324, 440, 468
TspRI	CASTG	1 cut(s)	513
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	119, 338
XceI	RCATGY	2 cut(s)	22, 196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.