Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0024876

Physical Location & Seq

Genomic Coordinates Forward (+)

26163207 .. 26163878

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGAGAAATTTTTTCCAAAGTTATGGACAGAATGCTGCAAGATCGACAGTTTTCGGTGGTCCAAGTGTGGCATGCAGCACAGTAAAAGCTGTGGAGTGGGATGCGGAATGGTCCAAGAACCCTGATCCATCTGGTCGTGCTGCACTTGGTATACATGCAGCTGCATATGAGGAATCCAAAGAAGTGAAGACTGGAAGTCCTGTGAGCGACTCTCCACAGAAACTTGTAAAAGGGTTTGCGGAGAAAGTGGCTGCAGTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

87

Amino Acids

9.2

Weight (kDa)

7.87

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114111
rosa_multiflora	Rmu_sc0004283.1_g000029 Rmu_sc0025329.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	2 cut(s)	104, 239
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	1 cut(s)	7
AhdI	GACNNNNNGTC	1 cut(s)	195
AluBI	AGCT	2 cut(s)	89, 161
AluI	AGCT	2 cut(s)	89, 161
AlwI	GGATC	1 cut(s)	119
ApeKI	GCWGC	6 cut(s)	35, 75, 140, 158, 161, 251
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	2 cut(s)	59, 111
AvaII	GGWCC	2 cut(s)	59, 111
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	6 cut(s)	22, 87, 127, 148, 170, 238
BccI	CCATC	1 cut(s)	136
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	6 cut(s)	36, 76, 141, 159, 162, 252
BlsI	GCNGC	6 cut(s)	37, 77, 142, 160, 163, 253
Bme18I	GGWCC	2 cut(s)	59, 111
BmeRI	GACNNNNNGTC	1 cut(s)	195
BmgT120I	GGNCC	2 cut(s)	59, 111
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
Bse1I	ACTGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	106
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	6 cut(s)	22, 87, 127, 148, 170, 238
BsgI	GTGCAG	1 cut(s)	126
BsmI	GAATGC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	41, 124
BspACI	CCGC	2 cut(s)	104, 239
BspMAI	CTGCAG	1 cut(s)	256
BspPI	GGATC	1 cut(s)	119
BsrI	ACTGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	41, 124
BssNAI	GTATAC	1 cut(s)	152
Bst1107I	GTATAC	1 cut(s)	152
Bst4CI	ACNGT	2 cut(s)	49, 82
BstC8I	GCNNGC	1 cut(s)	73
BstF5I	GGATG	1 cut(s)	106
BstKTI	GATC	2 cut(s)	44, 127
BstMBI	GATC	2 cut(s)	41, 124
BstNSI	RCATGY	2 cut(s)	75, 158
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	6 cut(s)	22, 87, 127, 148, 170, 238
BstV2I	GAAGAC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	23
BstZ17I	GTATAC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	59, 111
CviAII	CATG	2 cut(s)	72, 155
CviJI	RGCY	3 cut(s)	89, 161, 251
CviKI_1	RGCY	3 cut(s)	89, 161, 251
DpnI	GATC	2 cut(s)	43, 126
DpnII	GATC	2 cut(s)	41, 124
DriI	GACNNNNNGTC	1 cut(s)	195
Eam1105I	GACNNNNNGTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	59, 111
FaeI	CATG	2 cut(s)	75, 158
FaiI	YATR	6 cut(s)	24, 73, 152, 156, 166, 168
FatI	CATG	2 cut(s)	71, 154
FauNDI	CATATG	1 cut(s)	166
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	6 cut(s)	36, 76, 141, 159, 162, 252
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	6 cut(s)	36, 76, 141, 159, 162, 252
GluI	GCNGC	6 cut(s)	36, 76, 141, 159, 162, 252
Hin1II	CATG	2 cut(s)	75, 158
HinfI	GANTC	2 cut(s)	173, 209
Hpy166II	GTNNAC	1 cut(s)	152
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4III	ACNGT	2 cut(s)	49, 82
HpyCH4V	TGCA	6 cut(s)	38, 75, 143, 158, 164, 254
Hsp92II	CATG	2 cut(s)	75, 158
Kzo9I	GATC	2 cut(s)	41, 124
LpnPI	CCDG	4 cut(s)	117, 135, 177, 213
Lsp1109I	GCAGC	6 cut(s)	22, 87, 127, 148, 170, 238
LweI	GCATC	1 cut(s)	91
MalI	GATC	2 cut(s)	43, 126
MboI	GATC	2 cut(s)	41, 124
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	1 cut(s)	7
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	166
NdeII	GATC	2 cut(s)	41, 124
NlaIII	CATG	2 cut(s)	75, 158
NspI	RCATGY	2 cut(s)	75, 158
PaeI	GCATGC	1 cut(s)	75
PctI	GAATGC	1 cut(s)	37
PfeI	GAWTC	1 cut(s)	173
PkrI	GCNGC	6 cut(s)	37, 77, 142, 160, 163, 253
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspPI	GGNCC	2 cut(s)	59, 111
PstI	CTGCAG	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	161
SatI	GCNGC	6 cut(s)	36, 76, 141, 159, 162, 252
Sau3AI	GATC	2 cut(s)	41, 124
Sau96I	GGNCC	2 cut(s)	59, 111
SchI	GAGTC	1 cut(s)	203
SetI	ASST	2 cut(s)	91, 163
SfaNI	GCATC	1 cut(s)	91
SfcI	CTRYAG	1 cut(s)	252
SinI	GGWCC	2 cut(s)	59, 111
SphI	GCATGC	1 cut(s)	75
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	104, 239
TaaI	ACNGT	2 cut(s)	49, 82
TaqI	TCGA	1 cut(s)	44
TasI	AATT	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	173
TseI	GCWGC	6 cut(s)	35, 75, 140, 158, 161, 251
VpaK11BI	GGWCC	2 cut(s)	59, 111
XapI	RAATTY	1 cut(s)	7
XceI	RCATGY	2 cut(s)	75, 158
XmiI	GTMKAC	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.