Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025329.1

Orthogroup ID

OG0024876

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 469

Gene Structure 469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025329.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

aatgctgcaagattgacagttttcggtggtccaagtgtggcatgcagcacagcaaaagctgtggagtgggatgcggaatggttcaagaaccctgatccatctggtcgtgctgcacttggtatacatgtagctgcatatgaggaatccaaagatgtgaagactggaagtcctgtgagcgactctccacagaaacttgtaaaaggggttgcagagaaagtggctgctgtagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

77

Amino Acids

7.97

Weight (kDa)

6.78

Isoelectric Point (pI)

34.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114111
rosa_multiflora	Rmu_sc0004283.1_g000029 Rmu_sc0025329.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	121
AciI	CCGC	1 cut(s)	74
AclWI	GGATC	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	1 cut(s)	85
AhdI	GACNNNNNGTC	1 cut(s)	165
AluBI	AGCT	2 cut(s)	59, 131
AluI	AGCT	2 cut(s)	59, 131
AlwI	GGATC	1 cut(s)	89
ApeKI	GCWGC	5 cut(s)	5, 45, 110, 131, 221
AspS9I	GGNCC	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	29
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	4 cut(s)	57, 97, 118, 208
BccI	CCATC	1 cut(s)	106
BfmI	CTRYAG	1 cut(s)	225
BisI	GCNGC	5 cut(s)	6, 46, 111, 132, 222
BlsI	GCNGC	5 cut(s)	7, 47, 112, 133, 223
Bme18I	GGWCC	1 cut(s)	29
BmeRI	GACNNNNNGTC	1 cut(s)	165
BmgT120I	GGNCC	1 cut(s)	29
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	164
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
Bse1I	ACTGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	76
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	4 cut(s)	57, 97, 118, 208
BsgI	GTGCAG	1 cut(s)	96
Bsp143I	GATC	1 cut(s)	94
BspACI	CCGC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	166
BssMI	GATC	1 cut(s)	94
BssNAI	GTATAC	1 cut(s)	122
Bst1107I	GTATAC	1 cut(s)	122
Bst4CI	ACNGT	1 cut(s)	19
BstC8I	GCNNGC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	94
BstNSI	RCATGY	2 cut(s)	45, 128
BstSFI	CTRYAG	1 cut(s)	225
BstV1I	GCAGC	4 cut(s)	57, 97, 118, 208
BstV2I	GAAGAC	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	122
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	1 cut(s)	43
Cfr13I	GGNCC	1 cut(s)	29
CspCI	CAANNNNNGTGG	2 cut(s)	42, 77
CviAII	CATG	2 cut(s)	42, 125
CviJI	RGCY	3 cut(s)	59, 131, 221
CviKI_1	RGCY	3 cut(s)	59, 131, 221
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
DriI	GACNNNNNGTC	1 cut(s)	165
Eam1105I	GACNNNNNGTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	29
FaeI	CATG	2 cut(s)	45, 128
FaiI	YATR	5 cut(s)	43, 122, 126, 136, 138
FatI	CATG	2 cut(s)	41, 124
FauNDI	CATATG	1 cut(s)	136
FblI	GTMKAC	1 cut(s)	121
Fnu4HI	GCNGC	5 cut(s)	6, 46, 111, 132, 222
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	5 cut(s)	6, 46, 111, 132, 222
GluI	GCNGC	5 cut(s)	6, 46, 111, 132, 222
Hin1II	CATG	2 cut(s)	45, 128
HinfI	GANTC	2 cut(s)	143, 179
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	85
Hpy8I	GTNNAC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	19
HpyCH4V	TGCA	5 cut(s)	8, 45, 113, 134, 209
Hsp92II	CATG	2 cut(s)	45, 128
Kzo9I	GATC	1 cut(s)	94
LpnPI	CCDG	4 cut(s)	87, 105, 147, 183
Lsp1109I	GCAGC	4 cut(s)	57, 97, 118, 208
LweI	GCATC	1 cut(s)	61
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	1 cut(s)	169
MlyI	GAGTC	1 cut(s)	173
MnlI	CCTC	1 cut(s)	133
NdeI	CATATG	1 cut(s)	136
NdeII	GATC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	45, 128
NspI	RCATGY	2 cut(s)	45, 128
PaeI	GCATGC	1 cut(s)	45
PciI	ACATGT	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	143
PkrI	GCNGC	5 cut(s)	7, 47, 112, 133, 223
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
PscI	ACATGT	1 cut(s)	124
PspPI	GGNCC	1 cut(s)	29
SatI	GCNGC	5 cut(s)	6, 46, 111, 132, 222
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	1 cut(s)	173
SetI	ASST	2 cut(s)	61, 133
SfaNI	GCATC	1 cut(s)	61
SfcI	CTRYAG	1 cut(s)	225
SinI	GGWCC	1 cut(s)	29
SphI	GCATGC	1 cut(s)	45
SsiI	CCGC	1 cut(s)	74
TaaI	ACNGT	1 cut(s)	19
TfiI	GAWTC	1 cut(s)	143
TseI	GCWGC	5 cut(s)	5, 45, 110, 131, 221
VpaK11BI	GGWCC	1 cut(s)	29
XceI	RCATGY	2 cut(s)	45, 128
XmiI	GTMKAC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.