Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004283.1

Orthogroup ID

OG0024876

Physical Location & Seq

Genomic Coordinates Forward (+)

125711 .. 127645

Gene Structure 1935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004283.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atggtcgcgaagagttcatcatccctttgtctccagcagttgatagagacttctgaccaccattgctcgtatccttcagcgttcccatctacaggagcgatatcattggcccaatcagggagatcaaccagggcaagactgctttgtgctgcttggggtgttgaggctcgagtaccgtttcttgacaaagaattcatcaatactgctatggacattgatccagaatggaaaatgatcaggcctgatcttgggagaattgagaagtgggacttgtgcaaagcatttgatgatgatcagaagccatatttaccaaagaatactgcaagattgacagttcccggtggtccaagtgtggcatgcagcacaactaaagctgtggagtgggacgaggaatggtccaagaaccctgatccatctggtcgtgctgcacttggtatacatgtagctgcgtatgaggaatccaaagatgtgaaaaatggagatcttgtgagtgactccacagaaacttgtaaaaggtgttgcagagaaagtggctgcagtagtttgagtggaatgaaaaaggtactgaatgttactaatgcttttcttctgtcgaaattacgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004066 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006082 GO:0006520 GO:0006528 GO:0006529 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009066 GO:0009067 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009987 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019752 GO:0030054 GO:0032787 GO:0034641 GO:0042538 GO:0042802 GO:0042803 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046983 GO:0050896 GO:0055044 GO:0071704 GO:0072330 GO:0097164 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko01100 ko01110 map00250 map01100 map01110

Pfam Domains

Protein Families

Asn_synthase GATase_7

Protein Analysis

201

Amino Acids

22.05

Weight (kDa)

6.81

Isoelectric Point (pI)

42.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024876)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0114111
rosa_multiflora	Rmu_sc0004283.1_g000029 Rmu_sc0025329.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	436
AccII	CGCG	1 cut(s)	8
AclWI	GGATC	2 cut(s)	212, 404
AcsI	RAATTY	1 cut(s)	191
AcuI	CTGAAG	1 cut(s)	60
AfaI	GTAC	2 cut(s)	174, 564
AfiI	CCNNNNNNNGG	3 cut(s)	92, 117, 248
AflIII	ACRYGT	1 cut(s)	439
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	374, 446
AluI	AGCT	2 cut(s)	374, 446
Alw26I	GTCTC	2 cut(s)	35, 41
AlwI	GGATC	2 cut(s)	212, 404
Ama87I	CYCGRG	1 cut(s)	168
AoxI	GGCC	2 cut(s)	108, 239
ApeKI	GCWGC	5 cut(s)	149, 360, 425, 446, 534
ApoI	RAATTY	1 cut(s)	191
AspS9I	GGNCC	3 cut(s)	109, 344, 396
AsuC2I	CCSGG	1 cut(s)	339
AvaI	CYCGRG	1 cut(s)	168
AvaII	GGWCC	2 cut(s)	344, 396
BbvI	GCAGC	5 cut(s)	136, 372, 412, 433, 521
BccI	CCATC	2 cut(s)	94, 421
BciT130I	CCWGG	1 cut(s)	130
BciVI	GTATCC	1 cut(s)	81
BclI	TGATCA	2 cut(s)	234, 292
BcnI	CCSGG	1 cut(s)	339
BcoDI	GTCTC	2 cut(s)	35, 41
BfmI	CTRYAG	2 cut(s)	90, 535
BfuI	GTATCC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	481
BisI	GCNGC	5 cut(s)	150, 361, 426, 447, 535
BlsI	GCNGC	5 cut(s)	151, 362, 427, 448, 536
Bme1390I	CCNGG	2 cut(s)	130, 339
Bme18I	GGWCC	2 cut(s)	344, 396
BmeT110I	CYCGRG	1 cut(s)	168
BmgT120I	GGNCC	3 cut(s)	109, 344, 396
BmrFI	CCNGG	2 cut(s)	130, 339
BpmI	CTGGAG	1 cut(s)	17
BpuMI	CCSGG	1 cut(s)	339
BsaBI	GATNNNNATC	1 cut(s)	291
BsaJI	CCNNGG	1 cut(s)	129
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	92, 117, 248
Bse3DI	GCAATG	1 cut(s)	61
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	1 cut(s)	20
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	92, 117, 248
BseMI	GCAATG	1 cut(s)	61
BseXI	GCAGC	5 cut(s)	136, 372, 412, 433, 521
BsgI	GTGCAG	1 cut(s)	411
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	110, 241
BsiHKCI	CYCGRG	1 cut(s)	168
BsiSI	CCGG	1 cut(s)	339
BslFI	GGGAC	2 cut(s)	281, 398
BslI	CCNNNNNNNGG	3 cut(s)	92, 117, 248
BsmAI	GTCTC	2 cut(s)	35, 41
BsmFI	GGGAC	2 cut(s)	281, 398
BsnI	GGCC	2 cut(s)	110, 241
BsoBI	CYCGRG	1 cut(s)	168
Bsp143I	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
Bsp68I	TCGCGA	1 cut(s)	8
BspANI	GGCC	2 cut(s)	110, 241
BspFNI	CGCG	1 cut(s)	8
BspMAI	CTGCAG	1 cut(s)	539
BspPI	GGATC	2 cut(s)	212, 404
BsrDI	GCAATG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
BssNAI	GTATAC	1 cut(s)	437
Bst1107I	GTATAC	1 cut(s)	437
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	2 cut(s)	177, 334
Bst6I	CTCTTC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	358
BstF5I	GGATG	1 cut(s)	20
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	7 cut(s)	125, 220, 237, 247, 295, 412, 484
BstMAI	GTCTC	2 cut(s)	35, 41
BstMBI	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	2 cut(s)	360, 443
BstSCI	CCNGG	2 cut(s)	128, 337
BstSFI	CTRYAG	2 cut(s)	90, 535
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	136, 372, 412, 433, 521
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
BstZ17I	GTATAC	1 cut(s)	437
BsuI	GTATCC	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	110, 241
BtsCI	GGATG	1 cut(s)	20
BtuMI	TCGCGA	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	109, 344, 396
Csp6I	GTAC	2 cut(s)	173, 563
CviAII	CATG	2 cut(s)	357, 440
CviJI	RGCY	7 cut(s)	110, 167, 241, 301, 374, 446, 534
CviKI_1	RGCY	7 cut(s)	110, 167, 241, 301, 374, 446, 534
CviQI	GTAC	2 cut(s)	173, 563
DpnI	GATC	7 cut(s)	124, 219, 236, 246, 294, 411, 483
DpnII	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
Eam1104I	CTCTTC	1 cut(s)	5
EarI	CTCTTC	1 cut(s)	5
Eco147I	AGGCCT	1 cut(s)	241
Eco32I	GATATC	1 cut(s)	102
Eco47I	GGWCC	2 cut(s)	344, 396
Eco57I	CTGAAG	1 cut(s)	60
Eco88I	CYCGRG	1 cut(s)	168
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	128
EcoRV	GATATC	1 cut(s)	102
FaeI	CATG	2 cut(s)	360, 443
FaiI	YATR	6 cut(s)	209, 304, 358, 437, 441, 453
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	281, 398
FatI	CATG	2 cut(s)	356, 439
FbaI	TGATCA	2 cut(s)	234, 292
FblI	GTMKAC	1 cut(s)	436
Fnu4HI	GCNGC	5 cut(s)	150, 361, 426, 447, 535
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	5 cut(s)	150, 361, 426, 447, 535
GluI	GCNGC	5 cut(s)	150, 361, 426, 447, 535
GsuI	CTGGAG	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	110, 241
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	2 cut(s)	360, 443
HinfI	GANTC	2 cut(s)	458, 494
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	2 cut(s)	55, 297
Hpy188III	TCNNGA	3 cut(s)	7, 182, 221
Hpy8I	GTNNAC	1 cut(s)	437
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	2 cut(s)	177, 334
HpyCH4IV	ACGT	1 cut(s)	601
HpyCH4V	TGCA	6 cut(s)	276, 323, 360, 428, 522, 537
HpySE526I	ACGT	1 cut(s)	601
Hsp92II	CATG	2 cut(s)	360, 443
Ksp22I	TGATCA	2 cut(s)	234, 292
Kzo9I	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
LmnI	GCTCC	1 cut(s)	95
Lsp1109I	GCAGC	5 cut(s)	136, 372, 412, 433, 521
MaeII	ACGT	1 cut(s)	601
MaeIII	GTNAC	2 cut(s)	491, 571
MalI	GATC	7 cut(s)	124, 219, 236, 246, 294, 411, 483
MboI	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
MboII	GAAGA	2 cut(s)	22, 578
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	3 cut(s)	191, 255, 596
MlyI	GAGTC	1 cut(s)	488
MnlI	CCTC	3 cut(s)	157, 382, 448
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	130, 339
MvaI	CCWGG	1 cut(s)	130
MvnI	CGCG	1 cut(s)	8
NciI	CCSGG	1 cut(s)	339
NdeII	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
NlaIII	CATG	2 cut(s)	360, 443
NmuCI	GTSAC	1 cut(s)	491
NruI	TCGCGA	1 cut(s)	8
NspI	RCATGY	2 cut(s)	360, 443
PaeI	GCATGC	1 cut(s)	360
PaeR7I	CTCGAG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	241
PciI	ACATGT	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	458
PkrI	GCNGC	5 cut(s)	151, 362, 427, 448, 536
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
PscI	ACATGT	1 cut(s)	439
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspPI	GGNCC	3 cut(s)	109, 344, 396
PspXI	VCTCGAGB	1 cut(s)	168
PstI	CTGCAG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	481
RruI	TCGCGA	1 cut(s)	8
RsaI	GTAC	2 cut(s)	174, 564
RsaNI	GTAC	2 cut(s)	173, 563
SatI	GCNGC	5 cut(s)	150, 361, 426, 447, 535
Sau3AI	GATC	7 cut(s)	122, 217, 234, 244, 292, 409, 481
Sau96I	GGNCC	3 cut(s)	109, 344, 396
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	2 cut(s)	130, 339
SetI	ASST	5 cut(s)	376, 448, 518, 564, 604
SfcI	CTRYAG	2 cut(s)	90, 535
Sfr274I	CTCGAG	1 cut(s)	168
SinI	GGWCC	2 cut(s)	344, 396
SlaI	CTCGAG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SphI	GCATGC	1 cut(s)	360
Sse9I	AATT	3 cut(s)	191, 255, 596
SseBI	AGGCCT	1 cut(s)	241
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	2 cut(s)	128, 337
TaaI	ACNGT	2 cut(s)	177, 334
TaiI	ACGT	1 cut(s)	604
TaqI	TCGA	2 cut(s)	169, 593
TasI	AATT	3 cut(s)	191, 255, 596
TfiI	GAWTC	1 cut(s)	458
TseFI	GTSAC	1 cut(s)	491
TseI	GCWGC	5 cut(s)	149, 360, 425, 446, 534
Tsp45I	GTSAC	1 cut(s)	491
TspDTI	ATGAA	3 cut(s)	6, 184, 569
VpaK11BI	GGWCC	2 cut(s)	344, 396
XapI	RAATTY	1 cut(s)	191
XceI	RCATGY	2 cut(s)	360, 443
XhoI	CTCGAG	1 cut(s)	168
XmiI	GTMKAC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.