RchiOBHm_Chr2g0117291

gag-polypeptide of LTR copia-type

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0018791
Physical Location & Seq
Forward (+)
29532350 .. 29535190
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2283 bp
ATGACTTCATACATAGAGAGTACTTCCCGGGAAGTAGATAATGTCAGTCTAGGCATATCTATACAAACCAAGGGACTACTAGTCTCTTTTGTTTTACCTTTTCTTTTATTGAAATTAAGGACAAGTCTTTATGGCCCCAGGAAGGAGGAAACTAAGAAGGAAAGAAAAATTTCATCAAGATTCAATCTTTTAGATCAATTAAGTTCTGAAGAAATGGCATCTCCTTGTCAAACTTGCAATACTATCTCAGTCCGATTGGATGAGACCAACTACCCGACTTGGGTCTTTCAGATGCAACATCACCTTAGAGGTCATGGTCTCTTAAAGTTTGTGGATGGCTCTCATCCCTGTCCACCTCAATTTCTTGTTATTGATGATGGCTCTCTCAAGAATAACTCTGTTGCTCGAGAAAAATGGATGGAGCAAGATAGTTCTGCTATTTCTCTGATTATCATTACACTCTCTCCGGACGCTCTTACTTTAGTCGTTGGTTGTCTGACATCAATGGAGGTATGGCTTACTCTTAAACAAAGATATGCTAGTACTTCAGAGTTGCATATTATGAAATTAAAGTCTACATTGCAAAGTATTCAGAAGGGTTCCGACTGTATAGAAAAATATTTGCTGAAATTTAAGAGTGCTAGAGATCAATTAGCTTCTGTTGGTGTTACAATATCAGATCAAGATGTTAAAGGTTTGATTCTTGCCGGTCTTCCTATTGAATATGGTCCCACTAGACAGATTATCAGAGGCAAAAATGATATTGAAATGGAGGAAGTTAGGTGTTTGTTATTATCTGCTGAGTATGAGATTGAATTAAAGCATAATGCTTTGTCATTATCCTCTCTTGCTGCTATGATTGCACAAAATAGTCTTGCCAATTCCTCACCTACCTATATGATGAATAATGCCTCAGCTAGCAATACATCTGATTTCCTGTCATCTCAATTTAGTCAACAAAGTAGCTGTTTTGCTCAACCCACTGGATTTATTGCTCAAAATGGTGAAAGTGTGCAGCTGCCTTATGATGGATATGGGAATGGTGGACTTCAACATAATGGAGCATTCAATCTTAGAGGATTTCAACAAACTGCAAGTGTTCAGCAAAAACACAATTTTCAACCCAATAGAGGACTAATGCAGCAACATGACTTCTCACATCAAAACTTCTCCCCACATGTGAGCTACACTAATAGTGAGAATTACTCCCAGCAAAGCTATTCTGATAACAATGGCAAGAACAGCTTCAGTAGACCACACATCAGCAACAACAAAAGTTACAACACTGGTCAAAGTTACTCGGGCTCAGTTGTTTGTCAGATTTGTGAAAAACCGGGGGGAATGCAAGTACTCTATGGTGGTCCTCAAGTGCAGGGCTACTCTCAGATTCCTGTAACAAGAGAAGATGACAATGGCAGTAAAACCAATATTGAAAATACTCAAAATGTTTCACAGGACGAGTATGTGAGTACAAGTAAAGAAAAACAGGAAGTGGTTTCAAAGGAGGTTTCTAAGGAGAAGATTGAGTCTGAAAGTGAGAATGGTGATGAGGGAAATCAGCCAGAGAAGTTTATGGAGGAGAGCTCTGATGAAAAAGACACTTTTCCATTTGAACTTTGCTTGCCTGATGAGGATAGCTTAATTACAGTGGTTGATTACAAGGATATGGTTGAGCGAAATCAAGTCAAAGCTGATGGAGTAAGCCTAAGTGCAGCAGTTGATAGTTCTAGTAAGCCGATGGACTCAAAAATTGGAATCCAAGATGCAAACTCTTCTCAGGTCTACAAAAGTGAAGCCATTAATGACGTTAGTGATATGAGCAGCTCCAGTAGTATGAGCAATGACATGTACAAGCCCCACAAGGTGAATGGTGTAAGATGGGAAGCGATTCAAGCTGTCCGAGATCATGATGGGATGCTGGGTTTGAATCATTTCAAGTTGTTGAACAGTAAACACAATACTCAAGGAGTTGGGTTGTCACATCTCAAAAACAAGAAAGTTGATTCGTCTGCTACAACATCAATCTGTTCATGTTCTAGGGCAGGATCAGTGGAGAAAGAAAATAGTGACTTGAATAAGGATGCTGCAGAAAACAAGGCATTTATCCCTCCATATTCAATTCCCTCTAAATGGCAACAAGCTATACTCAAAGAAATTGACACTTTGTTGATACAAGGCACGTGGCAGCTTCCTTGTACTTCTCTTGAAAGACCTCTACTGAACTGTAGGCAGGCTTGTCGGCCTATGAAGCTATGGCAATTACCACTCATTTCTCCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2

Protein Analysis

760

Amino Acids

84.36

Weight (kDa)

5.67

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotran_gag_2 PF14223 98 - 268 8.7e-23 gag-polypeptide of LTR copia-type
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00990 FvH4_2g00990 FvH4_2g00990
rosa_chinensis RchiOBHm_Chr2g0098011 RchiOBHm_Chr2g0117291
rosa_laevigata RLG00000015902 RLG00000031605
rosa_multiflora Rmu_co8179886.1_g000001
rosa_samantha Rh2DG293500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 575, 1252, 1782
AccIII TCCGGA 1 cut(s) 466
AclWI GGATC 1 cut(s) 2053
AcsI RAATTY 2 cut(s) 168, 629
AcuI CTGAAG 3 cut(s) 228, 531, 1231
AcvI CACGTG 1 cut(s) 2181
AdeI CACNNNGTG 1 cut(s) 1864
AfaI GTAC 6 cut(s) 22, 544, 1350, 1471, 1850, 2197
AfiI CCNNNNNNNGG 5 cut(s) 142, 280, 1028, 1130, 2130
AflIII ACRYGT 2 cut(s) 1177, 1845
AhdI GACNNNNNGTC 1 cut(s) 80
AhlI ACTAGT 1 cut(s) 79
AjnI CCWGG 2 cut(s) 137, 2275
Alw21I GWGCWC 1 cut(s) 1586
Alw26I GTCTC 3 cut(s) 88, 257, 323
AlwI GGATC 1 cut(s) 2053
Ama87I CYCGRG 3 cut(s) 27, 405, 1300
Aor13HI TCCGGA 1 cut(s) 466
AoxI GGCC 2 cut(s) 133, 2240
ApeKI GCWGC 8 cut(s) 851, 1015, 1018, 1141, 1712, 1821, 2084, 2185
ApoI RAATTY 2 cut(s) 168, 629
AseI ATTAAT 1 cut(s) 1800
Asp700I GAANNNNTTC 4 cut(s) 169, 1244, 1887, 1931
AspS9I GGNCC 3 cut(s) 134, 728, 1361
AsuC2I CCSGG 3 cut(s) 28, 29, 1335
AsuHPI GGTGA 5 cut(s) 293, 879, 1016, 1556, 1876
AsuNHI GCTAGC 1 cut(s) 917
AvaI CYCGRG 3 cut(s) 27, 405, 1300
AvaII GGWCC 2 cut(s) 728, 1361
BanII GRGCYC 2 cut(s) 1307, 1586
BbrPI CACGTG 1 cut(s) 2181
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 1586
BbvCI CCTCAGC 1 cut(s) 913
BbvI GCAGC 8 cut(s) 838, 1005, 1027, 1153, 1724, 1833, 2071, 2197
BccI CCATC 8 cut(s) 329, 371, 412, 1022, 1688, 1732, 1872, 1904
BcgI CGANNNNNNTGC 2 cut(s) 2219, 2253
BciT130I CCWGG 2 cut(s) 139, 2277
BcnI CCSGG 3 cut(s) 28, 29, 1335
BcoDI GTCTC 3 cut(s) 88, 257, 323
BcuI ACTAGT 1 cut(s) 79
BfaI CTAG 8 cut(s) 50, 80, 540, 642, 735, 918, 1728, 2037
BfmI CTRYAG 2 cut(s) 2085, 2224
BisI GCNGC 8 cut(s) 852, 1016, 1019, 1142, 1713, 1822, 2085, 2186
BlsI GCNGC 8 cut(s) 853, 1017, 1020, 1143, 1714, 1823, 2086, 2187
BmcAI AGTACT 3 cut(s) 22, 544, 1350
Bme1390I CCNGG 5 cut(s) 28, 29, 139, 1335, 2277
Bme18I GGWCC 2 cut(s) 728, 1361
BmeRI GACNNNNNGTC 1 cut(s) 80
BmeT110I CYCGRG 3 cut(s) 27, 405, 1300
BmgT120I GGNCC 3 cut(s) 134, 728, 1361
BmiI GGNNCC 3 cut(s) 136, 601, 730
BmrFI CCNGG 5 cut(s) 28, 29, 139, 1335, 2277
BmsI GCATC 5 cut(s) 227, 282, 1753, 1905, 2071
BmtI GCTAGC 1 cut(s) 921
BoxI GACNNNNGTC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 704
BplI GAGNNNNNCTC 4 cut(s) 1190, 1222, 1568, 1600
BpmI CTGGAG 1 cut(s) 1810
Bpu10I CCTNAGC 1 cut(s) 913
BpuEI CTTGAG 3 cut(s) 371, 1350, 1947
BpuMI CCSGG 3 cut(s) 28, 29, 1335
BsaAI YACGTR 1 cut(s) 2181
BsaI GGTCTC 2 cut(s) 257, 323
BsaJI CCNNGG 4 cut(s) 27, 69, 137, 1334
BsaWI WCCGGW 1 cut(s) 466
BsaXI ACNNNNNCTCC 2 cut(s) 448, 478
Bsc4I CCNNNNNNNGG 5 cut(s) 142, 280, 1028, 1130, 2130
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 3 cut(s) 988, 1291, 1827
Bse3DI GCAATG 2 cut(s) 578, 1846
BseAI TCCGGA 1 cut(s) 466
BseBI CCWGG 2 cut(s) 139, 2277
BseDI CCNNGG 4 cut(s) 27, 69, 137, 1334
BseGI GGATG 6 cut(s) 265, 340, 343, 423, 1920, 2086
BseLI CCNNNNNNNGG 5 cut(s) 142, 280, 1028, 1130, 2130
BseMI GCAATG 2 cut(s) 578, 1846
BseMII CTCAG 6 cut(s) 261, 792, 927, 1320, 1397, 1790
BseNI ACTGG 3 cut(s) 988, 1291, 1827
BseRI GAGGAG 1 cut(s) 1592
BseXI GCAGC 8 cut(s) 838, 1005, 1027, 1153, 1724, 1833, 2071, 2197
BseYI CCCAGC 2 cut(s) 1209, 1918
BsgI GTGCAG 3 cut(s) 1034, 1391, 1731
BshFI GGCC 2 cut(s) 135, 2242
BsiHKAI GWGCWC 1 cut(s) 1586
BsiHKCI CYCGRG 3 cut(s) 27, 405, 1300
BsiSI CCGG 4 cut(s) 28, 467, 708, 1334
BslFI GGGAC 2 cut(s) 87, 714
BslI CCNNNNNNNGG 5 cut(s) 142, 280, 1028, 1130, 2130
BsmAI GTCTC 3 cut(s) 88, 257, 323
BsmFI GGGAC 2 cut(s) 87, 714
BsmI GAATGC 2 cut(s) 1064, 1347
BsnI GGCC 2 cut(s) 135, 2242
Bso31I GGTCTC 2 cut(s) 257, 323
BsoBI CYCGRG 3 cut(s) 27, 405, 1300
Bsp1286I GDGCHC 2 cut(s) 1307, 1586
Bsp13I TCCGGA 1 cut(s) 466
Bsp1407I TGTACA 1 cut(s) 1848
Bsp143I GATC 5 cut(s) 193, 646, 679, 1903, 2045
BspANI GGCC 2 cut(s) 135, 2242
BspCNI CTCAG 6 cut(s) 260, 793, 926, 1319, 1396, 1789
BspEI TCCGGA 1 cut(s) 466
BspHI TCATGA 1 cut(s) 1906
BspLI GGNNCC 3 cut(s) 136, 601, 730
BspMAI CTGCAG 1 cut(s) 2089
BspOI GCTAGC 1 cut(s) 921
BspPI GGATC 1 cut(s) 2053
BspTNI GGTCTC 2 cut(s) 257, 323
BsrDI GCAATG 2 cut(s) 578, 1846
BsrFI RCCGGY 1 cut(s) 707
BsrGI TGTACA 1 cut(s) 1848
BsrI ACTGG 3 cut(s) 988, 1291, 1827
BssAI RCCGGY 1 cut(s) 707
BssECI CCNNGG 4 cut(s) 27, 69, 137, 1334
BssMI GATC 5 cut(s) 193, 646, 679, 1903, 2045
BssT1I CCWWGG 1 cut(s) 69
Bst2UI CCWGG 2 cut(s) 139, 2277
Bst4CI ACNGT 4 cut(s) 608, 1648, 1949, 2225
Bst6I CTCTTC 1 cut(s) 1777
BstAUI TGTACA 1 cut(s) 1848
BstBAI YACGTR 1 cut(s) 2181
BstC8I GCNNGC 3 cut(s) 919, 1622, 2232
BstF5I GGATG 6 cut(s) 265, 340, 343, 423, 1920, 2086
BstKTI GATC 5 cut(s) 196, 649, 682, 1906, 2048
BstMAI GTCTC 3 cut(s) 88, 257, 323
BstMBI GATC 5 cut(s) 193, 646, 679, 1903, 2045
BstMWI GCNNNNNNNGC 4 cut(s) 860, 1242, 1892, 2248
BstNI CCWGG 2 cut(s) 139, 2277
BstNSI RCATGY 2 cut(s) 1181, 1849
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 5 cut(s) 26, 27, 137, 1333, 2275
BstSFI CTRYAG 2 cut(s) 2085, 2224
BstV1I GCAGC 8 cut(s) 838, 1005, 1027, 1153, 1724, 1833, 2071, 2197
BstV2I GAAGAC 1 cut(s) 704
BsuRI GGCC 2 cut(s) 135, 2242
BtsCI GGATG 6 cut(s) 265, 340, 343, 423, 1920, 2086
BtsIMutI CAGTG 4 cut(s) 981, 1284, 1653, 2055
Cac8I GCNNGC 3 cut(s) 919, 1622, 2232
CciI TCATGA 1 cut(s) 1906
Cfr10I RCCGGY 1 cut(s) 707
Cfr13I GGNCC 3 cut(s) 134, 728, 1361
Cfr9I CCCGGG 1 cut(s) 27
CseI GACGC 1 cut(s) 479
Csp6I GTAC 6 cut(s) 21, 543, 1349, 1470, 1849, 2196
CspCI CAANNNNNGTGG 2 cut(s) 2162, 2197
CviAII CATG 6 cut(s) 314, 1148, 1178, 1846, 1907, 2031
CviQI GTAC 6 cut(s) 21, 543, 1349, 1470, 1849, 2196
DpnI GATC 5 cut(s) 195, 648, 681, 1905, 2047
DpnII GATC 5 cut(s) 193, 646, 679, 1903, 2045
DraIII CACNNNGTG 1 cut(s) 1864
DriI GACNNNNNGTC 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 1777
Eam1105I GACNNNNNGTC 1 cut(s) 80
EarI CTCTTC 1 cut(s) 1777
Ecl136II GAGCTC 1 cut(s) 1584
Eco130I CCWWGG 1 cut(s) 69
Eco24I GRGCYC 2 cut(s) 1307, 1586
Eco31I GGTCTC 2 cut(s) 257, 323
Eco47I GGWCC 2 cut(s) 728, 1361
Eco53kI GAGCTC 1 cut(s) 1584
Eco57I CTGAAG 3 cut(s) 228, 531, 1231
Eco72I CACGTG 1 cut(s) 2181
Eco88I CYCGRG 3 cut(s) 27, 405, 1300
EcoICRI GAGCTC 1 cut(s) 1584
EcoRII CCWGG 2 cut(s) 137, 2275
EcoT14I CCWWGG 1 cut(s) 69
EcoT38I GRGCYC 2 cut(s) 1307, 1586
ErhI CCWWGG 1 cut(s) 69
FaeI CATG 6 cut(s) 317, 1151, 1181, 1849, 1910, 2034
FalI AAGNNNNNCTT 2 cut(s) 1229, 1261
FaqI GGGAC 2 cut(s) 87, 714
FatI CATG 6 cut(s) 313, 1147, 1177, 1845, 1906, 2030
FblI GTMKAC 3 cut(s) 575, 1252, 1782
Fnu4HI GCNGC 8 cut(s) 852, 1016, 1019, 1142, 1713, 1822, 2085, 2186
FokI GGATG 6 cut(s) 272, 330, 347, 430, 1927, 2093
FriOI GRGCYC 2 cut(s) 1307, 1586
Fsp4HI GCNGC 8 cut(s) 852, 1016, 1019, 1142, 1713, 1822, 2085, 2186
FspBI CTAG 8 cut(s) 50, 80, 540, 642, 735, 918, 1728, 2037
GluI GCNGC 8 cut(s) 852, 1016, 1019, 1142, 1713, 1822, 2085, 2186
GsaI CCCAGC 2 cut(s) 1213, 1922
GsuI CTGGAG 1 cut(s) 1810
HaeIII GGCC 2 cut(s) 135, 2242
HapII CCGG 4 cut(s) 28, 467, 708, 1334
HgaI GACGC 1 cut(s) 479
Hin1II CATG 6 cut(s) 317, 1151, 1181, 1849, 1910, 2034
HincII GTYRAC 1 cut(s) 956
HindII GTYRAC 1 cut(s) 956
HinfI GANTC 9 cut(s) 180, 700, 1387, 1526, 1742, 1755, 1888, 1927, 2003
HpaII CCGG 4 cut(s) 28, 467, 708, 1334
HphI GGTGA 5 cut(s) 293, 879, 1016, 1556, 1876
Hpy166II GTNNAC 7 cut(s) 353, 576, 956, 1046, 1253, 1783, 1952
Hpy188III TCNNGA 7 cut(s) 177, 388, 407, 467, 683, 1907, 2204
Hpy8I GTNNAC 7 cut(s) 353, 576, 956, 1046, 1253, 1783, 1952
HpyAV CCTTC 3 cut(s) 136, 151, 589
HpyCH4III ACNGT 4 cut(s) 608, 1648, 1949, 2225
HpyCH4IV ACGT 2 cut(s) 1806, 2180
HpyF10VI GCNNNNNNNGC 4 cut(s) 860, 1242, 1892, 2248
HpySE526I ACGT 2 cut(s) 1806, 2180
Hsp92II CATG 6 cut(s) 317, 1151, 1181, 1849, 1910, 2034
Kpn2I TCCGGA 1 cut(s) 466
Kzo9I GATC 5 cut(s) 193, 646, 679, 1903, 2045
LmnI GCTCC 3 cut(s) 421, 1061, 1829
Lsp1109I GCAGC 8 cut(s) 838, 1005, 1027, 1153, 1724, 1833, 2071, 2197
LweI GCATC 5 cut(s) 227, 282, 1753, 1905, 2071
MaeI CTAG 8 cut(s) 50, 80, 540, 642, 735, 918, 1728, 2037
MaeII ACGT 2 cut(s) 1806, 2180
MaeIII GTNAC 6 cut(s) 667, 1277, 1295, 1393, 1977, 2066
MalI GATC 5 cut(s) 195, 648, 681, 1905, 2047
MboI GATC 5 cut(s) 193, 646, 679, 1903, 2045
MboII GAAGA 5 cut(s) 221, 704, 1415, 1531, 1764
MhlI GDGCHC 2 cut(s) 1307, 1586
MlyI GAGTC 2 cut(s) 1535, 1736
MmeI TCCRAC 1 cut(s) 627
MroI TCCGGA 1 cut(s) 466
MroXI GAANNNNTTC 4 cut(s) 169, 1244, 1887, 1931
MspA1I CMGCKG 1 cut(s) 1018
MspI CCGG 4 cut(s) 28, 467, 708, 1334
MspR9I CCNGG 5 cut(s) 28, 29, 139, 1335, 2277
Mva1269I GAATGC 2 cut(s) 1064, 1347
MvaI CCWGG 2 cut(s) 139, 2277
MwoI GCNNNNNNNGC 4 cut(s) 860, 1242, 1892, 2248
NciI CCSGG 3 cut(s) 28, 29, 1335
NdeII GATC 5 cut(s) 193, 646, 679, 1903, 2045
NheI GCTAGC 1 cut(s) 917
NlaIII CATG 6 cut(s) 317, 1151, 1181, 1849, 1910, 2034
NlaIV GGNNCC 3 cut(s) 136, 601, 730
NmuCI GTSAC 2 cut(s) 1977, 2066
NspI RCATGY 2 cut(s) 1181, 1849
PaeR7I CTCGAG 1 cut(s) 405
PagI TCATGA 1 cut(s) 1906
PciI ACATGT 2 cut(s) 1177, 1845
PctI GAATGC 2 cut(s) 1064, 1347
PdmI GAANNNNTTC 4 cut(s) 169, 1244, 1887, 1931
PfeI GAWTC 7 cut(s) 180, 700, 1387, 1755, 1888, 1927, 2003
PkrI GCNGC 8 cut(s) 853, 1017, 1020, 1143, 1714, 1823, 2086, 2187
PleI GAGTC 2 cut(s) 1534, 1736
PmaCI CACGTG 1 cut(s) 2181
PmlI CACGTG 1 cut(s) 2181
PpsI GAGTC 2 cut(s) 1534, 1736
Ppu21I YACGTR 1 cut(s) 2181
PscI ACATGT 2 cut(s) 1177, 1845
PshAI GACNNNNGTC 1 cut(s) 281
PshBI ATTAAT 1 cut(s) 1800
Psp124BI GAGCTC 1 cut(s) 1586
Psp6I CCWGG 2 cut(s) 137, 2275
PspCI CACGTG 1 cut(s) 2181
PspFI CCCAGC 2 cut(s) 1209, 1918
PspGI CCWGG 2 cut(s) 137, 2275
PspN4I GGNNCC 3 cut(s) 136, 601, 730
PspPI GGNCC 3 cut(s) 134, 728, 1361
PstI CTGCAG 1 cut(s) 2089
PvuII CAGCTG 1 cut(s) 1018
RsaI GTAC 6 cut(s) 22, 544, 1350, 1471, 1850, 2197
RsaNI GTAC 6 cut(s) 21, 543, 1349, 1470, 1849, 2196
SacI GAGCTC 1 cut(s) 1586
SatI GCNGC 8 cut(s) 852, 1016, 1019, 1142, 1713, 1822, 2085, 2186
Sau3AI GATC 5 cut(s) 193, 646, 679, 1903, 2045
Sau96I GGNCC 3 cut(s) 134, 728, 1361
ScaI AGTACT 3 cut(s) 22, 544, 1350
SchI GAGTC 2 cut(s) 1535, 1736
ScrFI CCNGG 5 cut(s) 28, 29, 139, 1335, 2277
SduI GDGCHC 2 cut(s) 1307, 1586
SfaNI GCATC 5 cut(s) 227, 282, 1753, 1905, 2071
SfcI CTRYAG 2 cut(s) 2085, 2224
Sfr274I CTCGAG 1 cut(s) 405
SinI GGWCC 2 cut(s) 728, 1361
SlaI CTCGAG 1 cut(s) 405
SmaI CCCGGG 1 cut(s) 29
SmlI CTYRAG 4 cut(s) 386, 405, 1365, 1962
SmoI CTYRAG 4 cut(s) 386, 405, 1365, 1962
SpeI ACTAGT 1 cut(s) 79
SspI AATATT 2 cut(s) 620, 1429
SspMI CTAG 8 cut(s) 50, 80, 540, 642, 735, 918, 1728, 2037
SstI GAGCTC 1 cut(s) 1586
StyD4I CCNGG 5 cut(s) 26, 27, 137, 1333, 2275
StyI CCWWGG 1 cut(s) 69
TaaI ACNGT 4 cut(s) 608, 1648, 1949, 2225
TaiI ACGT 2 cut(s) 1809, 2183
TaqI TCGA 1 cut(s) 406
TatI WGTACW 6 cut(s) 20, 542, 1348, 1469, 1848, 2195
TfiI GAWTC 7 cut(s) 180, 700, 1387, 1755, 1888, 1927, 2003
TscAI CASTG 4 cut(s) 988, 1291, 1653, 2055
TseFI GTSAC 2 cut(s) 1977, 2066
TseI GCWGC 8 cut(s) 851, 1015, 1018, 1141, 1712, 1821, 2084, 2185
Tsp45I GTSAC 2 cut(s) 1977, 2066
TspDTI ATGAA 6 cut(s) 162, 578, 917, 1605, 2019, 2261
TspMI CCCGGG 1 cut(s) 27
TspRI CASTG 4 cut(s) 988, 1291, 1653, 2055
VpaK11BI GGWCC 2 cut(s) 728, 1361
VspI ATTAAT 1 cut(s) 1800
XapI RAATTY 2 cut(s) 168, 629
XceI RCATGY 2 cut(s) 1181, 1849
XcmI CCANNNNNNNNNTGG 1 cut(s) 1865
XhoI CTCGAG 1 cut(s) 405
XmaI CCCGGG 1 cut(s) 27
XmiI GTMKAC 3 cut(s) 575, 1252, 1782
XmnI GAANNNNTTC 4 cut(s) 169, 1244, 1887, 1931
XspI CTAG 8 cut(s) 50, 80, 540, 642, 735, 918, 1728, 2037
ZrmI AGTACT 3 cut(s) 22, 544, 1350
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.