Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018791

Physical Location & Seq

Genomic Coordinates Forward (+)

10477788 .. 10481028

Gene Structure 3241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47283

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGCAGCAACATGACTTCTCACATCAAAACGGTAACTTCTCCCCACATGTGAGCCACACTACTAGTGAGAATTACTCCCAGCAAAGCTATTCTGATAACAATGGCAAGAACAGCAACAGTAGACCACACATCAGCAACAACAAAAGTTACAACACTTGTCAAAGTTACTCGGGCTCAGTTGTTTTTCAGATTTGTGAAAAACCAGGTACTTTTATGCAACAAAATGTCAATTGTGTGGGAATGCAAGTACTCTATGGTGGTTCTCAAGTGCAGGGCTACTCTCAGATTCCTGTAACAAGAGAAGATGACAATGGCAGTGAAACCAATATTGCAAATACTCAAAATGTTTCACAGGACGAGTATGTGCGTACAAGTGAAGAAAAACAGGAAGAAGTGGTTTCAAAGGAGGTTTCTAAGGAGAAGGTTGAGTCTGAAAGTGAGACTGGTGATGAGGGAAATCAGCCAGAGAAGGTTATGGAGGAGAGCTCTGATGAAAAAGACACTTTTCCATTTGAACTTTGCTTGCCTGATGAGGATAGCTTAATTACAGTGGTTGATTACAAGGATATGGTTGAGCGAAATCAAGTCAAAGCTGATGGAGTAAGCCTAAGTGCAGCAGTTGATAGTTCTAGTAAGCCGATGGACACAAAAATTGGAATCCAAGATGCAAACTCTTCTCAGGTCTACAAAAGTGAAGCCATTAATGATGTTAGTGATAAGAGCAGCTCCAGTAGTATGAGCAATGACATGTACAAGCCCCATGAGGTGAATGATGTAAGATGGGAAGCGATTCAAGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

267

Amino Acids

29.7

Weight (kDa)

4.46

Isoelectric Point (pI)

43.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018791)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00990 FvH4_2g00990 FvH4_2g00990
rosa_chinensis	RchiOBHm_Chr2g0098011 RchiOBHm_Chr2g0117291
rosa_laevigata	RLG00000015902 RLG00000031605
rosa_multiflora	Rmu_co8179886.1_g000001
rosa_samantha	Rh2DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	121, 684
AfaI	GTAC	4 cut(s)	208, 249, 370, 752
AflIII	ACRYGT	2 cut(s)	46, 747
AgsI	TTSAA	3 cut(s)	402, 515, 794
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	6 cut(s)	87, 486, 540, 593, 726, 797
AluI	AGCT	6 cut(s)	87, 486, 540, 593, 726, 797
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	1 cut(s)	434
Ama87I	CYCGRG	1 cut(s)	169
ApeKI	GCWGC	3 cut(s)	4, 614, 723
AseI	ATTAAT	1 cut(s)	702
Asp700I	GAANNNNTTC	1 cut(s)	789
AsuHPI	GGTGA	2 cut(s)	458, 778
AvaI	CYCGRG	1 cut(s)	169
BanII	GRGCYC	2 cut(s)	176, 488
Bbv12I	GWGCWC	1 cut(s)	488
BbvI	GCAGC	3 cut(s)	16, 626, 735
BccI	CCATC	3 cut(s)	590, 634, 774
BciT130I	CCWGG	1 cut(s)	204
BcoDI	GTCTC	1 cut(s)	434
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	2 cut(s)	63, 630
BisI	GCNGC	3 cut(s)	5, 615, 724
BlsI	GCNGC	3 cut(s)	6, 616, 725
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	204
BmsI	GCATC	1 cut(s)	655
BplI	GAGNNNNNCTC	4 cut(s)	59, 91, 470, 502
BpmI	CTGGAG	1 cut(s)	712
BpuEI	CTTGAG	1 cut(s)	249
Bse1I	ACTGG	2 cut(s)	448, 729
Bse3DI	GCAATG	1 cut(s)	748
BseBI	CCWGG	1 cut(s)	204
BseMI	GCAATG	1 cut(s)	748
BseMII	CTCAG	3 cut(s)	189, 296, 692
BseNI	ACTGG	2 cut(s)	448, 729
BseRI	GAGGAG	1 cut(s)	494
BseXI	GCAGC	3 cut(s)	16, 626, 735
BseYI	CCCAGC	1 cut(s)	78
BsgI	GTGCAG	2 cut(s)	290, 633
BsiHKAI	GWGCWC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	434
BsmI	GAATGC	1 cut(s)	246
BsoBI	CYCGRG	1 cut(s)	169
Bsp1286I	GDGCHC	2 cut(s)	176, 488
Bsp1407I	TGTACA	1 cut(s)	750
BspCNI	CTCAG	3 cut(s)	188, 295, 691
BsrDI	GCAATG	1 cut(s)	748
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	2 cut(s)	448, 729
Bst2UI	CCWGG	1 cut(s)	204
Bst4CI	ACNGT	3 cut(s)	32, 119, 550
Bst6I	CTCTTC	1 cut(s)	679
BstAUI	TGTACA	1 cut(s)	750
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	5 cut(s)	175, 282, 414, 608, 678
BstMAI	GTCTC	1 cut(s)	434
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 794
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	2 cut(s)	50, 751
BstSCI	CCNGG	1 cut(s)	202
BstV1I	GCAGC	3 cut(s)	16, 626, 735
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	322, 555
Cac8I	GCNNGC	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	202
Csp6I	GTAC	4 cut(s)	207, 248, 369, 751
CviAII	CATG	4 cut(s)	11, 47, 748, 761
CviQI	GTAC	4 cut(s)	207, 248, 369, 751
DdeI	CTNAG	5 cut(s)	175, 282, 414, 608, 678
Eam1104I	CTCTTC	1 cut(s)	679
EarI	CTCTTC	1 cut(s)	679
Ecl136II	GAGCTC	1 cut(s)	486
Eco24I	GRGCYC	2 cut(s)	176, 488
Eco53kI	GAGCTC	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	169
EcoICRI	GAGCTC	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	176, 488
FaeI	CATG	4 cut(s)	14, 50, 751, 764
FatI	CATG	4 cut(s)	10, 46, 747, 760
FblI	GTMKAC	2 cut(s)	121, 684
Fnu4HI	GCNGC	3 cut(s)	5, 615, 724
FriOI	GRGCYC	2 cut(s)	176, 488
Fsp4HI	GCNGC	3 cut(s)	5, 615, 724
FspBI	CTAG	2 cut(s)	63, 630
GluI	GCNGC	3 cut(s)	5, 615, 724
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	712
Hin1II	CATG	4 cut(s)	14, 50, 751, 764
HinfI	GANTC	4 cut(s)	286, 428, 657, 790
HphI	GGTGA	2 cut(s)	458, 778
Hpy166II	GTNNAC	2 cut(s)	122, 685
Hpy188I	TCNGA	6 cut(s)	94, 189, 285, 433, 490, 803
Hpy8I	GTNNAC	2 cut(s)	122, 685
HpyAV	CCTTC	2 cut(s)	415, 463
HpyCH4III	ACNGT	3 cut(s)	32, 119, 550
HpyCH4V	TGCA	7 cut(s)	4, 217, 244, 271, 332, 614, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 794
HpyF3I	CTNAG	5 cut(s)	175, 282, 414, 608, 678
Hsp92II	CATG	4 cut(s)	14, 50, 751, 764
LmnI	GCTCC	1 cut(s)	731
Lsp1109I	GCAGC	3 cut(s)	16, 626, 735
LweI	GCATC	1 cut(s)	655
MabI	ACCWGGT	1 cut(s)	202
MaeI	CTAG	2 cut(s)	63, 630
MaeIII	GTNAC	4 cut(s)	32, 146, 164, 292
MboII	GAAGA	4 cut(s)	314, 389, 401, 666
MfeI	CAATTG	1 cut(s)	229
MhlI	GDGCHC	2 cut(s)	176, 488
MluCI	AATT	4 cut(s)	70, 229, 543, 651
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	5 cut(s)	400, 445, 472, 526, 757
MroXI	GAANNNNTTC	1 cut(s)	789
MseI	TTAA	2 cut(s)	542, 702
MspR9I	CCNGG	1 cut(s)	204
MunI	CAATTG	1 cut(s)	229
Mva1269I	GAATGC	1 cut(s)	246
MvaI	CCWGG	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	111, 794
NlaIII	CATG	4 cut(s)	14, 50, 751, 764
NspI	RCATGY	2 cut(s)	50, 751
PciI	ACATGT	2 cut(s)	46, 747
PctI	GAATGC	1 cut(s)	246
PdmI	GAANNNNTTC	1 cut(s)	789
PfeI	GAWTC	3 cut(s)	286, 657, 790
PkrI	GCNGC	3 cut(s)	6, 616, 725
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
PscI	ACATGT	2 cut(s)	46, 747
PshBI	ATTAAT	1 cut(s)	702
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	202
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	1 cut(s)	202
RsaI	GTAC	4 cut(s)	208, 249, 370, 752
RsaNI	GTAC	4 cut(s)	207, 248, 369, 751
SacI	GAGCTC	1 cut(s)	488
SaqAI	TTAA	2 cut(s)	542, 702
SatI	GCNGC	3 cut(s)	5, 615, 724
ScaI	AGTACT	1 cut(s)	249
SchI	GAGTC	1 cut(s)	437
ScrFI	CCNGG	1 cut(s)	204
SduI	GDGCHC	2 cut(s)	176, 488
SexAI	ACCWGGT	1 cut(s)	202
SfaNI	GCATC	1 cut(s)	655
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	4 cut(s)	70, 229, 543, 651
SspI	AATATT	1 cut(s)	328
SspMI	CTAG	2 cut(s)	63, 630
SstI	GAGCTC	1 cut(s)	488
StyD4I	CCNGG	1 cut(s)	202
TaaI	ACNGT	3 cut(s)	32, 119, 550
TasI	AATT	4 cut(s)	70, 229, 543, 651
TatI	WGTACW	2 cut(s)	247, 750
TfiI	GAWTC	3 cut(s)	286, 657, 790
Tru1I	TTAA	2 cut(s)	542, 702
Tru9I	TTAA	2 cut(s)	542, 702
TscAI	CASTG	2 cut(s)	322, 555
TseI	GCWGC	3 cut(s)	4, 614, 723
TspDTI	ATGAA	1 cut(s)	507
TspRI	CASTG	2 cut(s)	322, 555
VspI	ATTAAT	1 cut(s)	702
XceI	RCATGY	2 cut(s)	50, 751
XmiI	GTMKAC	2 cut(s)	121, 684
XmnI	GAANNNNTTC	1 cut(s)	789
XspI	CTAG	2 cut(s)	63, 630
ZrmI	AGTACT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.