Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0018791

Physical Location & Seq

Genomic Coordinates Forward (+)

34555912 .. 34566313

Gene Structure 10402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG293500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGCCCACAATCGTTTGGCCGACGGTAGGATCGCGTACCCCACAACCCGCCACCGGCGACGACGCCGACGAGTATGTGAGTACAAGTAAAGAAAAACAGGAAGTGGTTTCAAAGGAGGTTTCTAAGGAGAAGATTGAGTCTGAAAGTGAGAATGGTGATGAGGGAAATCAGCCAGAGAAGTTTATGGAGGAGAGCTCTGATGAAAAAGACACTTTTCCATTTGAACTTTGCTTGCCTGATGAGGATAGCTTAATTACAGTGGTTGATTACAAGGATATGGTTGAGCGAAATCAAGTCAAAGCTGATGGAGTCACACAGTACCATCCCACTATCATATTACTCATTAGCACATACAACTACATCAACTTTGCTGAGGTTTTTGATAGAATGAAATTGGTACAAAGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005911 GO:0008150 GO:0008152 GO:0008168 GO:0008757 GO:0009506 GO:0012505 GO:0016740 GO:0016741 GO:0030054 GO:0031410 GO:0031982 GO:0031984 GO:0032259 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0055044 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltransf_29

Protein Analysis

137

Amino Acids

15.62

Weight (kDa)

4.39

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018791)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g00990 FvH4_2g00990 FvH4_2g00990
rosa_chinensis	RchiOBHm_Chr2g0098011 RchiOBHm_Chr2g0117291
rosa_laevigata	RLG00000015902 RLG00000031605
rosa_multiflora	Rmu_co8179886.1_g000001
rosa_samantha	Rh2DG293500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	37
AciI	CCGC	1 cut(s)	51
AclWI	GGATC	1 cut(s)	40
AcoI	YGGCCR	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	4 cut(s)	40, 85, 323, 402
AfiI	CCNNNNNNNGG	2 cut(s)	29, 56
AgsI	TTSAA	2 cut(s)	114, 227
AluBI	AGCT	4 cut(s)	198, 252, 305, 410
AluI	AGCT	4 cut(s)	198, 252, 305, 410
Alw21I	GWGCWC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	40
AoxI	GGCC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	200
Bbv12I	GWGCWC	1 cut(s)	200
BbvCI	CCTCAGC	1 cut(s)	375
BccI	CCATC	2 cut(s)	302, 333
BplI	GAGNNNNNCTC	2 cut(s)	182, 214
Bpu10I	CCTNAGC	1 cut(s)	375
BsaHI	GRCGYC	1 cut(s)	66
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 56
Bse118I	RCCGGY	1 cut(s)	56
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	29, 56
BseMII	CTCAG	1 cut(s)	366
BseRI	GAGGAG	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	37
BshFI	GGCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	29, 56
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	32
BspACI	CCGC	1 cut(s)	51
BspANI	GGCC	1 cut(s)	22
BspCNI	CTCAG	1 cut(s)	367
BspFNI	CGCG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	40
BsrFI	RCCGGY	1 cut(s)	56
BssAI	RCCGGY	1 cut(s)	56
BssMI	GATC	1 cut(s)	32
BssNI	GRCGYC	1 cut(s)	66
Bst4CI	ACNGT	3 cut(s)	28, 262, 321
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	236
BstDEI	CTNAG	2 cut(s)	126, 375
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	37
BstKTI	GATC	1 cut(s)	35
BstMBI	GATC	1 cut(s)	32
BstUI	CGCG	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	22
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	236
Cfr10I	RCCGGY	1 cut(s)	56
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	4 cut(s)	39, 84, 322, 401
CviJI	RGCY	7 cut(s)	7, 22, 175, 198, 252, 305, 410
CviKI_1	RGCY	7 cut(s)	7, 22, 175, 198, 252, 305, 410
CviQI	GTAC	4 cut(s)	39, 84, 322, 401
DdeI	CTNAG	2 cut(s)	126, 375
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	198
Eco24I	GRGCYC	1 cut(s)	200
Eco53kI	GAGCTC	1 cut(s)	198
EcoICRI	GAGCTC	1 cut(s)	198
EcoT38I	GRGCYC	1 cut(s)	200
FaiI	YATR	5 cut(s)	78, 188, 281, 338, 355
FauI	CCCGC	1 cut(s)	58
FokI	GGATG	1 cut(s)	312
FriOI	GRGCYC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	1 cut(s)	57
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	66
HinfI	GANTC	2 cut(s)	140, 312
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	170
Hpy188I	TCNGA	2 cut(s)	145, 202
Hpy99I	CGWCG	4 cut(s)	28, 65, 68, 74
HpyCH4III	ACNGT	3 cut(s)	28, 262, 321
HpyF3I	CTNAG	2 cut(s)	126, 375
Hsp92I	GRCGYC	1 cut(s)	66
Kzo9I	GATC	1 cut(s)	32
LpnPI	CCDG	4 cut(s)	70, 86, 189, 252
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	200
MluCI	AATT	2 cut(s)	255, 395
MlyI	GAGTC	2 cut(s)	149, 321
MnlI	CCTC	5 cut(s)	112, 157, 184, 238, 370
MseI	TTAA	2 cut(s)	254, 412
MspI	CCGG	1 cut(s)	57
MvnI	CGCG	1 cut(s)	37
NdeII	GATC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	69
PleI	GAGTC	2 cut(s)	148, 320
PpsI	GAGTC	2 cut(s)	148, 320
Psp124BI	GAGCTC	1 cut(s)	200
RsaI	GTAC	4 cut(s)	40, 85, 323, 402
RsaNI	GTAC	4 cut(s)	39, 84, 322, 401
SacI	GAGCTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	254, 412
Sau3AI	GATC	1 cut(s)	32
SchI	GAGTC	2 cut(s)	149, 321
SduI	GDGCHC	1 cut(s)	200
SetI	ASST	6 cut(s)	123, 200, 254, 307, 381, 412
SgrAI	CRCCGGYG	1 cut(s)	56
Sse9I	AATT	2 cut(s)	255, 395
SsiI	CCGC	1 cut(s)	51
SstI	GAGCTC	1 cut(s)	200
TaaI	ACNGT	3 cut(s)	28, 262, 321
TasI	AATT	2 cut(s)	255, 395
TatI	WGTACW	1 cut(s)	83
Tru1I	TTAA	2 cut(s)	254, 412
Tru9I	TTAA	2 cut(s)	254, 412
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	313
Tsp45I	GTSAC	1 cut(s)	313
TspDTI	ATGAA	3 cut(s)	17, 219, 407
TspRI	CASTG	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.