RLG00000031605

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0018791
Physical Location & Seq
Reverse (-)
6646586 .. 6648105
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031605

Sequence Viewer

Length: 654 bp
ATGGCAAGAACAGCAACAGCAGACCACACATCAGCAACAACACCAGTCAAAGTTACTCAGGCTCAGTTGTTTGTCAGATTTGTGAAAAATCGGGACGAGTATGTGAGTACAAGTGAAGAAAAACAGGAAGAAGTGGTTTCAAAGGAGGTTTCTAAGGAGAAGGTTGAGTCTGAAATGGTTGATTACAAGGATATGGTTGAGCGAAATCAAGACAAAACTGATGGAGTAAGCCTAAGTGCAGCAGTTGATAGTTCTAGTAAGCCGATGGACACAAAAATTGGAATCCAAGATGCAAACTCTTCTCAGGTCTACAAAAGTGAAGCCATTAATGATGTTAGTGATAAGAGCAGCTCCAGTAGTATGAGCAATGGCATGTACAAGCCCCACAAGAATTTCCAACGACACATACTAGAAACAAACAACCTGGAGACATTGTTCGCGGATTATGCTTCTTCAAATAGACAAACTGAGGAAGCTAGTAACTCCAACAACGACGTCCCTAAACAACTAGAGACCTCGACTCAACCAGCCATGGCACAGAGCATAGTGACAATGGCGGAGGATAAATTCGACGACTGGTTCCTACGTCTAGAGATGCTCCCCGAAATCGATCATTTCGACTTTAATGAATTAATAAAGGACGACAACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

218

Amino Acids

24.52

Weight (kDa)

4.63

Isoelectric Point (pI)

42.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018791)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g00990 FvH4_2g00990 FvH4_2g00990
rosa_chinensis RchiOBHm_Chr2g0098011 RchiOBHm_Chr2g0117291
rosa_laevigata RLG00000015902 RLG00000031605
rosa_multiflora Rmu_co8179886.1_g000001
rosa_samantha Rh2DG293500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 440
AciI CCGC 2 cut(s) 440, 557
AcsI RAATTY 2 cut(s) 391, 566
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 2 cut(s) 109, 377
AflIII ACRYGT 1 cut(s) 648
AgsI TTSAA 2 cut(s) 141, 456
AjnI CCWGG 1 cut(s) 423
AloI GAACNNNNNNTCC 2 cut(s) 419, 451
AluBI AGCT 2 cut(s) 351, 476
AluI AGCT 2 cut(s) 351, 476
Alw26I GTCTC 2 cut(s) 422, 506
ApeKI GCWGC 2 cut(s) 239, 348
ApoI RAATTY 2 cut(s) 391, 566
AseI ATTAAT 2 cut(s) 327, 632
BbvI GCAGC 2 cut(s) 251, 360
BccI CCATC 2 cut(s) 215, 259
BciT130I CCWGG 1 cut(s) 425
BcoDI GTCTC 2 cut(s) 422, 506
BfaI CTAG 5 cut(s) 255, 410, 477, 509, 590
BisI GCNGC 2 cut(s) 240, 349
BlsI GCNGC 2 cut(s) 241, 350
Bme1390I CCNGG 1 cut(s) 425
BmiI GGNNCC 1 cut(s) 581
BmrFI CCNGG 1 cut(s) 425
BmsI GCATC 2 cut(s) 280, 585
BpmI CTGGAG 2 cut(s) 337, 446
Bsa29I ATCGAT 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 495
BsaI GGTCTC 1 cut(s) 506
BsaJI CCNNGG 1 cut(s) 531
BsaXI ACNNNNNCTCC 2 cut(s) 419, 449
Bse1I ACTGG 3 cut(s) 44, 354, 581
Bse3DI GCAATG 1 cut(s) 373
BseBI CCWGG 1 cut(s) 425
BseCI ATCGAT 1 cut(s) 609
BseDI CCNNGG 1 cut(s) 531
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 4 cut(s) 71, 77, 317, 459
BseNI ACTGG 3 cut(s) 44, 354, 581
BseXI GCAGC 2 cut(s) 251, 360
BsgI GTGCAG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 440
BshVI ATCGAT 1 cut(s) 609
BslFI GGGAC 2 cut(s) 107, 482
BsmAI GTCTC 2 cut(s) 422, 506
BsmFI GGGAC 2 cut(s) 107, 482
Bso31I GGTCTC 1 cut(s) 506
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 1 cut(s) 610
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 2 cut(s) 440, 557
BspCNI CTCAG 4 cut(s) 70, 76, 316, 460
BspDI ATCGAT 1 cut(s) 609
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 1 cut(s) 581
BspTNI GGTCTC 1 cut(s) 506
BsrDI GCAATG 1 cut(s) 373
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 3 cut(s) 44, 354, 581
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 1 cut(s) 610
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 1 cut(s) 531
Bst2UI CCWGG 1 cut(s) 425
Bst6I CTCTTC 1 cut(s) 304
BstACI GRCGYC 1 cut(s) 495
BstAUI TGTACA 1 cut(s) 375
BstDEI CTNAG 6 cut(s) 57, 63, 153, 233, 303, 468
BstDSI CCRYGG 1 cut(s) 531
BstFNI CGCG 1 cut(s) 440
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 2 cut(s) 422, 506
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 2 cut(s) 11, 446
BstNI CCWGG 1 cut(s) 425
BstNSI RCATGY 2 cut(s) 376, 652
BstSCI CCNGG 1 cut(s) 423
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 2 cut(s) 251, 360
Bsu15I ATCGAT 1 cut(s) 609
BsuTUI ATCGAT 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 531
ClaI ATCGAT 1 cut(s) 609
Csp6I GTAC 2 cut(s) 108, 376
CviAII CATG 3 cut(s) 373, 532, 649
CviJI RGCY 8 cut(s) 62, 231, 262, 323, 351, 382, 476, 530
CviKI_1 RGCY 8 cut(s) 62, 231, 262, 323, 351, 382, 476, 530
CviQI GTAC 2 cut(s) 108, 376
DdeI CTNAG 6 cut(s) 57, 63, 153, 233, 303, 468
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 304
EarI CTCTTC 1 cut(s) 304
EciI GGCGGA 1 cut(s) 572
Eco130I CCWWGG 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 506
EcoRII CCWGG 1 cut(s) 423
EcoT14I CCWWGG 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 3 cut(s) 376, 535, 652
FaiI YATR 9 cut(s) 102, 194, 362, 374, 407, 447, 533, 545, 650
FaqI GGGAC 2 cut(s) 107, 482
FatI CATG 3 cut(s) 372, 531, 648
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 240, 349
Fsp4HI GCNGC 2 cut(s) 240, 349
FspBI CTAG 5 cut(s) 255, 410, 477, 509, 590
GluI GCNGC 2 cut(s) 240, 349
GsuI CTGGAG 2 cut(s) 337, 446
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 3 cut(s) 376, 535, 652
HinfI GANTC 3 cut(s) 167, 282, 520
Hpy166II GTNNAC 1 cut(s) 310
Hpy188I TCNGA 2 cut(s) 77, 172
Hpy188III TCNNGA 3 cut(s) 92, 209, 590
Hpy8I GTNNAC 1 cut(s) 310
Hpy99I CGWCG 2 cut(s) 497, 575
HpyAV CCTTC 1 cut(s) 154
HpyCH4IV ACGT 2 cut(s) 495, 586
HpyCH4V TGCA 2 cut(s) 239, 293
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 446
HpyF3I CTNAG 6 cut(s) 57, 63, 153, 233, 303, 468
HpySE526I ACGT 2 cut(s) 495, 586
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 3 cut(s) 376, 535, 652
Kzo9I GATC 1 cut(s) 610
LmnI GCTCC 2 cut(s) 356, 603
LpnPI CCDG 9 cut(s) 44, 57, 110, 290, 367, 410, 437, 540, 562
Lsp1109I GCAGC 2 cut(s) 251, 360
LweI GCATC 2 cut(s) 280, 585
MaeI CTAG 5 cut(s) 255, 410, 477, 509, 590
MaeII ACGT 2 cut(s) 495, 586
MaeIII GTNAC 3 cut(s) 52, 479, 547
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 4 cut(s) 128, 140, 291, 444
MluCI AATT 4 cut(s) 276, 391, 566, 629
MlyI GAGTC 2 cut(s) 176, 514
MmeI TCCRAC 2 cut(s) 421, 510
MnlI CCTC 4 cut(s) 139, 463, 526, 553
MseI TTAA 3 cut(s) 327, 624, 632
MspR9I CCNGG 1 cut(s) 425
MvaI CCWGG 1 cut(s) 425
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 2 cut(s) 11, 446
NcoI CCATGG 1 cut(s) 531
NdeII GATC 1 cut(s) 610
NlaIII CATG 3 cut(s) 376, 535, 652
NlaIV GGNNCC 1 cut(s) 581
NmuCI GTSAC 1 cut(s) 547
NspI RCATGY 2 cut(s) 376, 652
PciI ACATGT 1 cut(s) 648
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PfeI GAWTC 1 cut(s) 282
PkrI GCNGC 2 cut(s) 241, 350
PleI GAGTC 2 cut(s) 175, 514
PpsI GAGTC 2 cut(s) 175, 514
PscI ACATGT 1 cut(s) 648
PshBI ATTAAT 2 cut(s) 327, 632
Psp6I CCWGG 1 cut(s) 423
PspGI CCWGG 1 cut(s) 423
PspN4I GGNNCC 1 cut(s) 581
RsaI GTAC 2 cut(s) 109, 377
RsaNI GTAC 2 cut(s) 108, 376
SaqAI TTAA 3 cut(s) 327, 624, 632
SatI GCNGC 2 cut(s) 240, 349
Sau3AI GATC 1 cut(s) 610
SchI GAGTC 2 cut(s) 176, 514
ScrFI CCNGG 1 cut(s) 425
SetI ASST 9 cut(s) 150, 165, 309, 353, 426, 478, 498, 518, 589
SfaNI GCATC 2 cut(s) 280, 585
Sse9I AATT 4 cut(s) 276, 391, 566, 629
SsiI CCGC 2 cut(s) 440, 557
SspMI CTAG 5 cut(s) 255, 410, 477, 509, 590
StyD4I CCNGG 1 cut(s) 423
StyI CCWWGG 1 cut(s) 531
TaiI ACGT 2 cut(s) 498, 589
TaqI TCGA 4 cut(s) 518, 570, 609, 618
TasI AATT 4 cut(s) 276, 391, 566, 629
TatI WGTACW 2 cut(s) 107, 375
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 3 cut(s) 327, 624, 632
Tru9I TTAA 3 cut(s) 327, 624, 632
TseFI GTSAC 1 cut(s) 547
TseI GCWGC 2 cut(s) 239, 348
Tsp45I GTSAC 1 cut(s) 547
TspDTI ATGAA 1 cut(s) 642
VspI ATTAAT 2 cut(s) 327, 632
XapI RAATTY 2 cut(s) 391, 566
XbaI TCTAGA 1 cut(s) 589
XceI RCATGY 2 cut(s) 376, 652
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 5 cut(s) 255, 410, 477, 509, 590
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.